Wall clock time and date at job start Tue Mar 31 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.42304 * 2 1 4 4 O 1.44646 * 110.50545 * 122.35011 * 2 1 3 5 5 C 1.44428 * 105.36972 * 159.18579 * 4 2 1 6 6 C 1.54480 * 104.80203 * 319.57183 * 5 4 2 7 7 C 1.54474 * 110.37434 * 237.68256 * 2 1 3 8 8 H 1.08998 * 110.51237 * 335.97773 * 7 2 1 9 9 N 1.46500 * 110.51023 * 98.54823 * 7 2 1 10 10 S 1.65596 * 120.00079 * 213.09542 * 9 7 2 11 11 O 1.42098 * 106.40345 * 311.46071 * 10 9 7 12 12 O 1.42094 * 106.40745 * 178.53902 * 10 9 7 13 13 N 1.65606 * 107.21969 * 64.99962 * 10 9 7 14 14 C 1.46499 * 120.00003 * 89.99706 * 13 10 9 15 15 C 1.46502 * 119.99935 * 270.00204 * 13 10 9 16 16 C 1.50695 * 109.47115 * 264.99495 * 15 13 10 17 17 H 1.07995 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99827 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99944 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00207 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47091 * 89.99714 * 20 18 16 22 22 H 1.48503 * 109.46995 * 209.99476 * 20 18 16 23 23 H 1.48499 * 109.46654 * 329.99499 * 20 18 16 24 24 H 1.08999 * 109.47299 * 182.31614 * 1 2 3 25 25 H 1.09002 * 109.47144 * 302.31893 * 1 2 3 26 26 H 1.09006 * 109.46990 * 62.31706 * 1 2 3 27 27 H 1.08994 * 110.37443 * 200.74278 * 5 4 2 28 28 H 1.09000 * 110.46472 * 78.44488 * 5 4 2 29 29 H 1.09005 * 110.51032 * 265.32971 * 6 5 4 30 30 H 1.08997 * 110.62911 * 142.68063 * 6 5 4 31 31 H 0.97004 * 120.00128 * 33.09722 * 9 7 2 32 32 H 1.09002 * 109.47391 * 270.00374 * 14 13 10 33 33 H 1.09001 * 109.46813 * 150.00430 * 14 13 10 34 34 H 1.09004 * 109.47041 * 30.00557 * 14 13 10 35 35 H 1.08999 * 109.47026 * 24.99991 * 15 13 10 36 36 H 1.09005 * 109.46953 * 144.99617 * 15 13 10 37 37 H 0.97000 * 120.00228 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0367 -0.7249 1.1445 5 6 3.3900 -1.0909 0.7974 6 6 3.3173 -1.5084 -0.6881 7 6 2.0678 -0.7742 -1.2238 8 1 1.3266 -1.4903 -1.5785 9 7 2.4377 0.1533 -2.2958 10 16 2.2539 -0.2957 -3.8791 11 8 2.8365 -1.5861 -4.0005 12 8 2.6617 0.8178 -4.6620 13 7 0.6314 -0.4879 -4.1491 14 6 -0.1750 0.6474 -4.6042 15 6 0.0024 -1.7932 -3.9327 16 6 -0.0574 -2.5445 -5.2376 17 1 0.3343 -2.0949 -6.1380 18 6 -0.6113 -3.8064 -5.2818 19 7 -0.6640 -4.4618 -6.4208 20 14 -1.2883 -4.5844 -3.7243 21 1 -2.7229 -4.2302 -3.5772 22 1 -1.1489 -6.0605 -3.8074 23 1 -0.5311 -4.0810 -2.5502 24 1 -0.3634 -1.0268 0.0415 25 1 -0.3633 0.5494 0.8685 26 1 -0.3633 0.4775 -0.9101 27 1 3.7262 -1.9270 1.4105 28 1 4.0585 -0.2386 0.9197 29 1 3.1929 -2.5878 -0.7758 30 1 4.2098 -1.1832 -1.2225 31 1 2.7903 1.0304 -2.0782 32 1 -0.5677 1.1837 -3.7403 33 1 -1.0028 0.2841 -5.2133 34 1 0.4454 1.3190 -5.1976 35 1 0.5878 -2.3635 -3.2115 36 1 -1.0079 -1.6506 -3.5489 37 1 -1.0540 -5.3494 -6.4520 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121571474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:58 Heat of formation + Delta-G solvation = -117.270245 kcal Electronic energy + Delta-G solvation = -21411.675088 eV Core-core repulsion = 18123.156473 eV Total energy + Delta-G solvation = -3288.518615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74832 -36.73906 -35.71500 -35.26706 -34.82863 -32.42187 -31.61878 -30.19947 -28.44525 -25.47285 -25.22245 -22.27566 -21.96591 -21.16153 -19.11933 -17.42064 -17.10296 -16.91917 -16.60606 -15.75279 -15.64141 -15.33705 -14.47700 -14.12841 -13.70933 -13.69495 -13.19485 -13.02632 -12.51277 -12.47030 -12.43995 -12.24388 -11.99758 -11.78550 -11.53145 -11.38037 -11.33077 -11.31595 -11.14600 -10.87652 -10.66733 -10.54534 -10.23784 -9.96069 -9.59329 -9.42038 -8.63230 -8.19161 -6.11789 -4.11600 1.06153 3.22647 3.28052 3.29690 3.35017 3.73500 4.04939 4.34349 4.47352 4.54902 4.81006 4.86742 4.98020 5.08620 5.15647 5.25954 5.34878 5.47054 5.53614 5.62735 5.68805 5.82080 5.89206 5.99266 6.05662 6.09498 6.19354 6.40132 6.61693 6.69013 6.96615 7.02527 7.34938 7.53158 8.44840 8.93158 9.46740 11.01726 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.007792 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.418506 B = 3592.503393 C = 4342.141586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.075 0.925 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.172 4.172 7 C 0.124 3.876 8 H 0.105 0.895 9 N -1.125 6.125 10 S 2.781 3.219 11 O -0.957 6.957 12 O -0.992 6.992 13 N -0.991 5.991 14 C 0.095 3.905 15 C 0.226 3.774 16 C -0.533 4.533 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.893 5.893 20 Si 0.872 3.128 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.264 1.264 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.410 0.590 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 10.215 14.197 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.011 3.989 3 H 0.093 0.907 4 O -0.290 6.290 5 C -0.031 4.031 6 C -0.212 4.212 7 C 0.016 3.984 8 H 0.123 0.877 9 N -0.883 5.883 10 S 2.788 3.212 11 O -0.940 6.940 12 O -0.977 6.977 13 N -0.833 5.833 14 C -0.051 4.051 15 C 0.103 3.897 16 C -0.572 4.572 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.699 3.301 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.189 1.189 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.242 0.758 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.149 9.669 13.626 17.215 hybrid contribution -0.412 -0.120 0.820 0.926 sum 3.737 9.548 14.446 17.715 Atomic orbital electron populations 1.21838 0.92449 1.03599 1.02787 1.23283 0.95906 0.95338 0.84404 0.90749 1.89182 1.27377 1.74616 1.37802 1.23395 0.84534 0.99885 0.95258 1.23445 0.99235 1.02461 0.96009 1.22177 0.96670 0.91135 0.88449 0.87681 1.56390 1.80733 1.26168 1.25023 1.02042 0.73397 0.73289 0.72450 1.93645 1.75214 1.40265 1.84895 1.93549 1.82025 1.54791 1.67287 1.57389 1.27501 1.17555 1.80859 1.21381 0.97104 0.87739 0.98923 1.19488 0.93510 0.78707 0.98007 1.21356 1.40343 1.00886 0.94602 0.90383 1.24878 0.95374 0.96691 0.96009 1.69892 1.44886 1.13210 1.25167 0.86921 0.79706 0.79327 0.84170 1.19978 1.20800 1.18903 0.91293 0.91697 0.90524 0.88907 0.92292 0.89358 0.89390 0.75762 0.94137 0.90091 0.91293 0.95075 0.95242 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.52 37.16 0.35 -1.26 16 2 C 0.07 0.80 3.65 -25.96 -0.09 0.71 16 3 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 4 O -0.37 -4.66 11.35 -35.23 -0.40 -5.06 16 5 C 0.05 0.48 7.64 37.93 0.29 0.77 16 6 C -0.17 -2.13 6.88 -25.16 -0.17 -2.30 16 7 C 0.12 1.66 3.22 -66.36 -0.21 1.45 16 8 H 0.11 1.60 6.04 -51.93 -0.31 1.28 16 9 N -1.13 -15.08 5.53 -3.56 -0.02 -15.10 16 10 S 2.78 51.95 6.03 -107.50 -0.65 51.30 16 11 O -0.96 -21.81 16.87 -57.18 -0.96 -22.77 16 12 O -0.99 -19.84 16.74 -57.18 -0.96 -20.80 16 13 N -0.99 -19.16 3.23 -123.05 -0.40 -19.55 16 14 C 0.09 1.52 10.68 59.85 0.64 2.16 16 15 C 0.23 5.10 3.89 -5.19 -0.02 5.08 16 16 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 20 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 31 H 0.41 4.26 8.64 -34.47 -0.30 3.97 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 35 H 0.03 0.71 5.26 -51.93 -0.27 0.44 16 36 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -34.43 314.53 -7.63 -42.06 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.43 Total: 2.26 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.34 Total: -6.64 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.36 Total: -61.09 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -2.32 Total: -48.63 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.65 Total: 51.30 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.43 -7.63 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.215 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds