Wall clock time and date at job start Tue Mar 31 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.32784 * 2 1 4 4 O 1.44428 * 110.37325 * 237.75296 * 2 1 3 5 5 C 1.44429 * 105.27260 * 200.65704 * 4 2 1 6 6 C 1.54481 * 104.80153 * 40.50726 * 5 4 2 7 7 C 1.54473 * 110.37291 * 122.36802 * 2 1 3 8 8 H 1.09003 * 110.51365 * 261.45963 * 7 2 1 9 9 N 1.46507 * 110.51242 * 24.16766 * 7 2 1 10 10 S 1.65601 * 119.99910 * 215.00177 * 9 7 2 11 11 O 1.42102 * 106.40037 * 178.53651 * 10 9 7 12 12 O 1.42095 * 106.40057 * 311.45778 * 10 9 7 13 13 N 1.65600 * 107.21793 * 64.99966 * 10 9 7 14 14 C 1.46498 * 119.99781 * 269.99483 * 13 10 9 15 15 C 1.46500 * 119.99975 * 90.00002 * 13 10 9 16 16 C 1.50702 * 109.46840 * 94.99883 * 15 13 10 17 17 H 1.08002 * 120.00472 * 359.97438 * 16 15 13 18 18 C 1.37877 * 119.99672 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00303 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99966 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 89.99756 * 20 18 16 22 22 H 1.48504 * 109.47087 * 209.99871 * 20 18 16 23 23 H 1.48500 * 109.47058 * 329.99853 * 20 18 16 24 24 H 1.09001 * 109.47002 * 180.79395 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.79832 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.79661 * 1 2 3 27 27 H 1.09002 * 110.37119 * 159.34301 * 5 4 2 28 28 H 1.09004 * 110.36731 * 281.67791 * 5 4 2 29 29 H 1.09000 * 110.50929 * 94.67063 * 6 5 4 30 30 H 1.08998 * 110.50996 * 217.23520 * 6 5 4 31 31 H 0.96997 * 119.99869 * 34.99796 * 9 7 2 32 32 H 1.09001 * 109.46793 * 90.00159 * 14 13 10 33 33 H 1.08996 * 109.47044 * 210.00339 * 14 13 10 34 34 H 1.09005 * 109.47560 * 330.00639 * 14 13 10 35 35 H 1.09000 * 109.47073 * 214.99389 * 15 13 10 36 36 H 1.08997 * 109.46950 * 334.99788 * 15 13 10 37 37 H 0.96993 * 120.00221 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7224 -1.1451 5 6 3.3875 -1.0862 -0.8006 6 6 3.3178 -1.5063 0.6844 7 6 2.0678 -0.7753 1.2231 8 1 2.3429 -0.0860 2.0215 9 7 1.0730 -1.7407 1.6970 10 16 0.9301 -2.0550 3.3166 11 8 -0.1286 -2.9932 3.4513 12 8 2.2460 -2.2939 3.7965 13 7 0.4134 -0.6595 4.0430 14 6 1.3903 0.3128 4.5397 15 6 -1.0205 -0.3972 4.1892 16 6 -1.4777 -0.8505 5.5517 17 1 -0.7710 -1.2904 6.2399 18 6 -2.7983 -0.7037 5.9198 19 7 -3.6588 -0.1676 5.0821 20 14 -3.3653 -1.2663 7.6085 21 1 -3.2299 -0.1466 8.5745 22 1 -4.7869 -1.6898 7.5377 23 1 -2.5299 -2.4096 8.0557 24 1 -0.3633 -1.0276 0.0142 25 1 -0.3633 0.5262 0.8827 26 1 -0.3633 0.5014 -0.8970 27 1 3.7243 -1.9207 -1.4157 28 1 4.0526 -0.2312 -0.9223 29 1 3.1956 -2.5860 0.7705 30 1 4.2120 -1.1806 1.2157 31 1 0.4979 -2.1957 1.0620 32 1 1.6261 1.0265 3.7503 33 1 0.9726 0.8426 5.3958 34 1 2.2991 -0.2074 4.8424 35 1 -1.2074 0.6711 4.0801 36 1 -1.5696 -0.9425 3.4216 37 1 -4.5877 -0.0640 5.3412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121571641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:00 Heat of formation + Delta-G solvation = -117.958528 kcal Electronic energy + Delta-G solvation = -21254.449862 eV Core-core repulsion = 17965.901401 eV Total energy + Delta-G solvation = -3288.548461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80365 -36.61699 -35.54016 -35.17450 -34.74049 -32.45074 -31.54937 -29.99048 -27.81611 -25.73574 -25.07930 -22.33453 -22.12688 -20.83142 -19.21756 -17.52941 -16.77829 -16.58168 -16.27764 -15.77375 -15.60298 -15.25616 -14.84349 -14.31401 -13.47390 -13.40616 -13.32399 -12.85756 -12.43041 -12.30121 -12.26731 -12.16461 -11.64670 -11.47315 -11.46033 -11.27775 -11.20303 -11.08411 -11.05961 -10.87948 -10.71604 -10.53185 -10.09045 -9.99499 -9.77516 -9.30200 -8.45979 -8.10216 -6.07919 -4.11875 1.20393 3.30699 3.37363 3.42479 3.47294 3.75555 4.10373 4.43593 4.52251 4.59981 4.83572 4.89091 4.99267 5.15895 5.22452 5.27645 5.36563 5.49148 5.58803 5.62726 5.76026 5.89394 5.91613 5.96861 6.10419 6.26872 6.28075 6.52246 6.74923 7.07561 7.23791 7.39748 7.58477 7.89583 8.18743 8.90486 9.53562 11.00680 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.005511 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.925781 B = 5079.466973 C = 5454.324034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.078 0.922 4 O -0.372 6.372 5 C 0.045 3.955 6 C -0.171 4.171 7 C 0.129 3.871 8 H 0.099 0.901 9 N -1.122 6.122 10 S 2.780 3.220 11 O -0.963 6.963 12 O -0.997 6.997 13 N -0.996 5.996 14 C 0.093 3.907 15 C 0.258 3.742 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.415 0.585 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.432 2.474 -10.429 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.096 0.904 4 O -0.291 6.291 5 C -0.032 4.032 6 C -0.210 4.210 7 C 0.020 3.980 8 H 0.117 0.883 9 N -0.881 5.881 10 S 2.787 3.213 11 O -0.947 6.947 12 O -0.980 6.980 13 N -0.839 5.839 14 C -0.054 4.054 15 C 0.136 3.864 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.250 0.750 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.410 1.736 -10.072 16.077 hybrid contribution -0.602 -0.022 0.679 0.908 sum 11.808 1.714 -9.393 15.185 Atomic orbital electron populations 1.21768 0.92215 1.03382 1.02917 1.23292 0.96402 0.95130 0.84468 0.90397 1.89161 1.27045 1.74699 1.38172 1.23392 0.84802 0.99812 0.95187 1.23477 0.98664 1.02740 0.96133 1.21971 0.87815 0.90362 0.97815 0.88316 1.56417 1.48214 1.55543 1.27934 1.02025 0.72994 0.73703 0.72566 1.93649 1.56164 1.59982 1.84866 1.93526 1.40311 1.84622 1.79589 1.57607 1.15789 1.38417 1.72061 1.21390 0.91909 0.92431 0.99634 1.19049 0.72226 0.97591 0.97530 1.21494 0.94409 1.40748 1.00266 0.92204 1.24925 0.96426 0.95000 0.97626 1.69910 1.03744 1.44328 1.35497 0.86515 0.78025 0.79091 0.83938 1.20619 1.21043 1.19714 0.91502 0.90172 0.91900 0.89134 0.92234 0.89608 0.89618 0.75008 0.94445 0.90265 0.91548 0.94708 0.94387 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.01 37.16 0.33 -1.40 16 2 C 0.07 0.75 3.88 -25.95 -0.10 0.65 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 O -0.37 -4.52 11.34 -35.23 -0.40 -4.92 16 5 C 0.05 0.43 7.63 37.93 0.29 0.72 16 6 C -0.17 -1.83 6.88 -25.17 -0.17 -2.00 16 7 C 0.13 1.57 3.54 -66.37 -0.24 1.34 16 8 H 0.10 1.12 6.74 -51.93 -0.35 0.77 16 9 N -1.12 -16.35 4.68 -3.56 -0.02 -16.37 16 10 S 2.78 53.49 6.02 -107.50 -0.65 52.85 16 11 O -0.96 -22.78 17.11 -57.17 -0.98 -23.76 16 12 O -1.00 -20.04 16.50 -57.17 -0.94 -20.99 16 13 N -1.00 -19.80 3.23 -123.05 -0.40 -20.20 16 14 C 0.09 1.51 10.13 59.85 0.61 2.11 16 15 C 0.26 6.28 5.08 -5.19 -0.03 6.25 16 16 C -0.53 -14.71 9.38 -34.44 -0.32 -15.03 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 5.64 7.11 -34.47 -0.25 5.39 16 32 H 0.04 0.48 7.47 -51.93 -0.39 0.09 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.91 16 34 H 0.07 1.02 7.02 -51.93 -0.36 0.66 16 35 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -33.55 315.38 -8.04 -41.59 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.40 Total: 1.15 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 0.27 Total: -5.71 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.32 Total: -61.69 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -2.32 Total: -49.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.65 Total: 52.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.55 -8.04 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.364 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds