Wall clock time and date at job start Tue Mar 31 2020 00:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.32784 * 2 1 4 4 O 1.44428 * 110.37325 * 237.75296 * 2 1 3 5 5 C 1.44429 * 105.27260 * 200.65704 * 4 2 1 6 6 C 1.54481 * 104.80153 * 40.50726 * 5 4 2 7 7 C 1.54473 * 110.37291 * 122.36802 * 2 1 3 8 8 H 1.09003 * 110.51365 * 261.45963 * 7 2 1 9 9 N 1.46507 * 110.51242 * 24.16766 * 7 2 1 10 10 S 1.65601 * 119.99910 * 215.00177 * 9 7 2 11 11 O 1.42102 * 106.40037 * 178.53651 * 10 9 7 12 12 O 1.42095 * 106.40057 * 311.45778 * 10 9 7 13 13 N 1.65600 * 107.21793 * 64.99966 * 10 9 7 14 14 C 1.46498 * 119.99781 * 269.99483 * 13 10 9 15 15 C 1.46500 * 119.99975 * 90.00002 * 13 10 9 16 16 C 1.50702 * 109.46840 * 94.99883 * 15 13 10 17 17 H 1.08002 * 120.00472 * 359.97438 * 16 15 13 18 18 C 1.37877 * 119.99672 * 179.97438 * 16 15 13 19 19 N 1.31515 * 120.00303 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99966 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 89.99756 * 20 18 16 22 22 H 1.48504 * 109.47087 * 209.99871 * 20 18 16 23 23 H 1.48500 * 109.47058 * 329.99853 * 20 18 16 24 24 H 1.09001 * 109.47002 * 180.79395 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.79832 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.79661 * 1 2 3 27 27 H 1.09002 * 110.37119 * 159.34301 * 5 4 2 28 28 H 1.09004 * 110.36731 * 281.67791 * 5 4 2 29 29 H 1.09000 * 110.50929 * 94.67063 * 6 5 4 30 30 H 1.08998 * 110.50996 * 217.23520 * 6 5 4 31 31 H 0.96997 * 119.99869 * 34.99796 * 9 7 2 32 32 H 1.09001 * 109.46793 * 90.00159 * 14 13 10 33 33 H 1.08996 * 109.47044 * 210.00339 * 14 13 10 34 34 H 1.09005 * 109.47560 * 330.00639 * 14 13 10 35 35 H 1.09000 * 109.47073 * 214.99389 * 15 13 10 36 36 H 1.08997 * 109.46950 * 334.99788 * 15 13 10 37 37 H 0.96993 * 120.00221 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 8 2.0329 -0.7224 -1.1451 5 6 3.3875 -1.0862 -0.8006 6 6 3.3178 -1.5063 0.6844 7 6 2.0678 -0.7753 1.2231 8 1 2.3429 -0.0860 2.0215 9 7 1.0730 -1.7407 1.6970 10 16 0.9301 -2.0550 3.3166 11 8 -0.1286 -2.9932 3.4513 12 8 2.2460 -2.2939 3.7965 13 7 0.4134 -0.6595 4.0430 14 6 1.3903 0.3128 4.5397 15 6 -1.0205 -0.3972 4.1892 16 6 -1.4777 -0.8505 5.5517 17 1 -0.7710 -1.2904 6.2399 18 6 -2.7983 -0.7037 5.9198 19 7 -3.6588 -0.1676 5.0821 20 14 -3.3653 -1.2663 7.6085 21 1 -3.2299 -0.1466 8.5745 22 1 -4.7869 -1.6898 7.5377 23 1 -2.5299 -2.4096 8.0557 24 1 -0.3633 -1.0276 0.0142 25 1 -0.3633 0.5262 0.8827 26 1 -0.3633 0.5014 -0.8970 27 1 3.7243 -1.9207 -1.4157 28 1 4.0526 -0.2312 -0.9223 29 1 3.1956 -2.5860 0.7705 30 1 4.2120 -1.1806 1.2157 31 1 0.4979 -2.1957 1.0620 32 1 1.6261 1.0265 3.7503 33 1 0.9726 0.8426 5.3958 34 1 2.2991 -0.2074 4.8424 35 1 -1.2074 0.6711 4.0801 36 1 -1.5696 -0.9425 3.4216 37 1 -4.5877 -0.0640 5.3412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121571641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:00 Heat of formation + Delta-G solvation = -144.342796 kcal Electronic energy + Delta-G solvation = -21255.593970 eV Core-core repulsion = 17965.901401 eV Total energy + Delta-G solvation = -3289.692569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69355 -38.26420 -37.21532 -36.84300 -35.81825 -34.49507 -32.40388 -31.02087 -29.66244 -26.83015 -26.55605 -24.20278 -22.95986 -21.81435 -20.58513 -19.09662 -18.44197 -18.27889 -17.59761 -16.89310 -16.79502 -16.42789 -16.19956 -15.78820 -15.06282 -14.93345 -14.39346 -14.05099 -13.99736 -13.81326 -13.37007 -13.28983 -13.19227 -13.13387 -13.03921 -12.91227 -12.69124 -12.48224 -12.38029 -12.16119 -12.00665 -11.92386 -11.82223 -11.72497 -10.94455 -10.58630 -10.36046 -9.77766 -8.20052 -6.31475 -0.32284 1.38899 1.41478 1.51705 2.03138 2.40694 2.63819 2.93429 3.11219 3.46491 3.63854 3.67667 3.99058 4.06671 4.18795 4.26075 4.32680 4.47110 4.67537 4.72457 4.76993 4.84034 4.92483 5.02202 5.08881 5.11124 5.19477 5.22779 5.32368 5.47303 5.70688 5.85799 5.92747 6.07816 6.13695 6.76878 7.37450 8.87300 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.005511 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.925781 B = 5079.466973 C = 5454.324034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.391 6.391 5 C 0.045 3.955 6 C -0.171 4.171 7 C 0.116 3.884 8 H 0.111 0.889 9 N -1.109 6.109 10 S 2.797 3.203 11 O -1.013 7.013 12 O -1.005 7.005 13 N -1.001 6.001 14 C 0.085 3.915 15 C 0.274 3.726 16 C -0.550 4.550 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.276 1.276 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.420 0.580 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.017 0.983 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.838 3.353 -10.744 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.121 0.879 4 O -0.311 6.311 5 C -0.031 4.031 6 C -0.211 4.211 7 C 0.008 3.992 8 H 0.129 0.871 9 N -0.872 5.872 10 S 2.805 3.195 11 O -0.997 6.997 12 O -0.989 6.989 13 N -0.843 5.843 14 C -0.061 4.061 15 C 0.150 3.850 16 C -0.590 4.590 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.201 1.201 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.847 2.627 -10.382 17.505 hybrid contribution -0.956 -0.285 0.698 1.218 sum 12.891 2.341 -9.684 16.292 Atomic orbital electron populations 1.21773 0.93248 1.02647 1.02950 1.23316 0.95652 0.96064 0.83767 0.87930 1.89145 1.28499 1.74997 1.38426 1.23563 0.84014 1.01224 0.94312 1.23502 0.98433 1.01878 0.97282 1.22354 0.87784 0.90326 0.98731 0.87131 1.55992 1.48963 1.56202 1.26000 1.01254 0.71979 0.72921 0.73317 1.93576 1.57978 1.62087 1.86106 1.93507 1.40213 1.84681 1.80451 1.57459 1.14547 1.39214 1.73089 1.21651 0.91077 0.92514 1.00812 1.18591 0.74463 0.96631 0.95287 1.21856 0.94706 1.40776 1.01640 0.93151 1.25706 0.96632 0.95123 1.01149 1.69995 1.04076 1.45124 1.37086 0.85617 0.77535 0.78860 0.80071 1.18990 1.20447 1.20087 0.92629 0.91017 0.91035 0.88029 0.89887 0.90808 0.87910 0.74365 0.90503 0.91098 0.90612 0.95037 0.96545 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.01 71.98 0.65 -2.76 16 2 C 0.07 1.44 3.88 31.10 0.12 1.56 16 3 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 4 O -0.39 -8.59 11.34 -148.98 -1.69 -10.28 16 5 C 0.05 0.73 7.63 72.49 0.55 1.28 16 6 C -0.17 -3.24 6.88 31.61 0.22 -3.02 16 7 C 0.12 2.57 3.54 46.00 0.16 2.73 16 8 H 0.11 2.18 6.74 -2.39 -0.02 2.17 16 9 N -1.11 -31.57 4.68 -165.17 -0.77 -32.34 16 10 S 2.80 107.38 6.02 -56.49 -0.34 107.04 16 11 O -1.01 -49.17 17.11 -128.00 -2.19 -51.36 16 12 O -1.01 -39.47 16.50 -128.00 -2.11 -41.58 16 13 N -1.00 -39.47 3.23 -543.23 -1.75 -41.22 16 14 C 0.08 2.60 10.13 127.77 1.29 3.90 16 15 C 0.27 13.52 5.08 85.63 0.43 13.96 16 16 C -0.55 -30.94 9.38 25.60 0.24 -30.70 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.76 5.46 84.65 0.46 1.22 16 19 N -0.92 -53.69 13.29 21.45 0.28 -53.41 16 20 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H 0.05 1.37 6.29 -2.39 -0.02 1.36 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.42 11.40 7.11 -96.75 -0.69 10.71 16 32 H 0.08 1.75 7.47 -2.39 -0.02 1.73 16 33 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.08 2.19 7.02 -2.38 -0.02 2.17 16 35 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 36 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -71.74 315.38 -2.03 -73.77 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.38 Total: 14.66 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.13 Total: -11.83 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -2.24 Total: -126.97 kcal Atomic # 8 Polarization: -97.23 SS G_CDS: -5.99 Total: -103.22 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 107.38 SS G_CDS: -0.34 Total: 107.04 kcal Total: -71.74 -2.03 -73.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121571641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.575 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds