Wall clock time and date at job start Tue Mar 31 2020 01:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46816 * 2 1 4 4 C 1.46504 * 119.99832 * 277.43415 * 3 2 1 5 5 C 1.50697 * 109.46945 * 269.99679 * 4 3 2 6 6 H 1.08001 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00053 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00200 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47435 * 120.00317 * 9 7 5 12 12 H 1.48503 * 109.47317 * 240.00563 * 9 7 5 13 13 C 1.34778 * 120.00404 * 97.43442 * 3 2 1 14 14 O 1.21506 * 120.00150 * 185.63483 * 13 3 2 15 15 C 1.48142 * 119.99548 * 5.63550 * 13 3 2 16 16 C 1.39804 * 120.88913 * 315.37691 * 15 13 3 17 17 C 1.38525 * 119.19669 * 180.02562 * 16 15 13 18 18 N 1.31452 * 121.04152 * 0.02562 * 17 16 15 19 19 C 1.32702 * 121.95558 * 359.72657 * 18 17 16 20 20 C 1.48071 * 119.66009 * 180.26872 * 19 18 17 21 21 O 1.21429 * 119.99938 * 180.27062 * 20 19 18 22 22 O 1.34678 * 119.99803 * 0.26748 * 20 19 18 23 23 C 1.39289 * 120.68294 * 0.53929 * 19 18 17 24 24 H 1.09001 * 109.47029 * 68.81856 * 1 2 3 25 25 H 1.09009 * 109.46686 * 188.80971 * 1 2 3 26 26 H 1.08994 * 109.47654 * 308.81126 * 1 2 3 27 27 H 1.08999 * 109.47497 * 239.99614 * 2 1 3 28 28 H 1.09002 * 109.46952 * 119.99484 * 2 1 3 29 29 H 1.09001 * 109.47119 * 30.00153 * 4 3 2 30 30 H 1.09001 * 109.46983 * 150.00242 * 4 3 2 31 31 H 0.97002 * 119.99980 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.40426 * 0.02562 * 16 15 13 33 33 H 1.08003 * 119.48430 * 179.97438 * 17 16 15 34 34 H 0.96694 * 117.00021 * 179.97438 * 22 20 19 35 35 H 1.07994 * 120.55003 * 179.75303 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1076 2.1266 -1.2581 5 6 3.4666 1.9126 -1.8733 6 1 4.1911 1.2840 -1.3769 7 6 3.7847 2.5185 -3.0702 8 7 2.9022 3.2836 -3.6748 9 14 5.4689 2.2528 -3.8331 10 1 6.2714 1.3573 -2.9616 11 1 5.3131 1.6311 -5.1727 12 1 6.1616 3.5591 -3.9711 13 6 2.3853 1.9663 1.1574 14 8 2.6925 3.1418 1.1732 15 6 2.4141 1.1762 2.4101 16 6 1.3663 0.3103 2.7368 17 6 1.4292 -0.4114 3.9176 18 7 2.4553 -0.2929 4.7306 19 6 3.4754 0.5121 4.4614 20 6 4.6082 0.6020 5.4106 21 8 5.5425 1.3403 5.1728 22 8 4.6024 -0.1352 6.5377 23 6 3.4888 1.2777 3.2978 24 1 -0.3633 0.3713 -0.9582 25 1 -0.3633 -1.0156 0.1574 26 1 -0.3634 0.6440 0.8007 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3382 1.7737 -1.9449 30 1 1.9606 3.1887 -1.0624 31 1 3.1261 3.7102 -4.5167 32 1 0.5180 0.2052 2.0766 33 1 0.6221 -1.0814 4.1747 34 1 5.3639 -0.0432 7.1264 35 1 4.3182 1.9351 3.0828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124618394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:42 Heat of formation + Delta-G solvation = -75.464023 kcal Electronic energy + Delta-G solvation = -21235.808283 eV Core-core repulsion = 17813.658570 eV Total energy + Delta-G solvation = -3422.149713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06429 -39.90785 -38.62342 -36.29797 -35.67291 -33.32618 -32.41115 -31.76868 -30.32596 -27.52034 -25.63174 -24.62541 -23.20990 -22.66989 -21.92031 -19.44845 -18.21803 -17.51798 -16.84421 -16.56913 -16.51328 -15.96307 -15.69215 -15.38720 -14.69859 -14.36157 -14.14295 -13.92750 -13.72885 -13.33320 -13.05702 -12.50595 -12.17970 -11.95918 -11.78468 -11.73725 -11.30994 -11.06781 -11.00344 -10.92673 -10.69239 -10.23355 -10.08376 -9.95604 -9.71125 -9.45540 -9.18892 -8.51368 -7.87839 -6.12764 -4.18187 0.25545 0.81307 2.17551 2.60648 3.16252 3.25790 3.34152 3.37712 3.53526 3.73427 4.05223 4.37748 4.50522 4.67232 4.75818 4.84134 5.12193 5.17929 5.22276 5.42512 5.49950 5.51445 5.61596 5.83557 5.90103 6.09954 6.20097 6.24724 6.35400 6.89826 7.29152 7.36746 7.38497 7.75902 7.82833 8.11591 8.15509 8.68124 8.88485 9.47540 10.95424 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.004898 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.329237 B = 5714.676987 C = 6668.217497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.093 3.907 3 N -0.583 5.583 4 C 0.245 3.755 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.546 3.454 14 O -0.523 6.523 15 C -0.074 4.074 16 C -0.125 4.125 17 C 0.091 3.909 18 N -0.429 5.429 19 C 0.080 3.920 20 C 0.545 3.455 21 O -0.501 6.501 22 O -0.494 6.494 23 C -0.057 4.057 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.412 0.588 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -10.561 14.598 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.031 4.031 3 N -0.313 5.313 4 C 0.126 3.874 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.331 3.669 14 O -0.400 6.400 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.069 4.069 18 N -0.141 5.141 19 C -0.056 4.056 20 C 0.387 3.613 21 O -0.388 6.388 22 O -0.304 6.304 23 C -0.078 4.078 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.270 0.730 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.411 -10.107 14.844 18.492 hybrid contribution 1.360 0.360 -0.944 1.694 sum -3.051 -9.746 13.900 17.249 Atomic orbital electron populations 1.22354 0.96354 1.01654 1.03019 1.21730 0.93878 0.84177 1.03300 1.48223 1.61375 1.13453 1.08293 1.19393 0.97356 0.92871 0.77736 1.21445 0.99366 1.30296 1.05948 0.92309 1.24922 0.97430 0.94750 0.96821 1.69934 1.34525 1.31200 1.17448 0.86430 0.83877 0.78166 0.78903 1.19755 1.20876 1.20767 1.17967 0.79264 0.86890 0.82783 1.90799 1.48326 1.15362 1.85469 1.20713 0.94762 0.96623 0.96488 1.23315 0.99440 0.93654 0.98052 1.22830 0.95905 0.98241 0.89933 1.67484 0.99964 1.15268 1.31359 1.19779 0.93749 0.98375 0.93683 1.20392 0.84604 0.76462 0.79859 1.90948 1.35136 1.37491 1.75218 1.84666 1.50029 1.63389 1.32280 1.22162 0.98643 0.95979 0.90992 0.91274 0.91544 0.92412 0.89587 0.91051 0.94450 0.93434 0.92636 0.82077 0.81148 0.72955 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.13 37.16 0.34 -1.68 16 2 C 0.09 1.36 5.60 -4.04 -0.02 1.34 16 3 N -0.58 -11.67 2.46 -176.06 -0.43 -12.10 16 4 C 0.24 6.11 5.22 -5.19 -0.03 6.09 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.55 11.14 7.33 -12.19 -0.09 11.05 16 14 O -0.52 -12.98 16.55 5.36 0.09 -12.89 16 15 C -0.07 -1.18 5.12 -104.68 -0.54 -1.71 16 16 C -0.12 -1.46 7.53 -38.89 -0.29 -1.75 16 17 C 0.09 0.94 11.17 -17.61 -0.20 0.74 16 18 N -0.43 -5.50 10.09 -9.86 -0.10 -5.60 16 19 C 0.08 1.13 6.75 -83.07 -0.56 0.57 16 20 C 0.55 7.27 8.32 34.76 0.29 7.56 16 21 O -0.50 -7.87 17.11 -19.21 -0.33 -8.20 16 22 O -0.49 -4.95 13.24 -40.43 -0.54 -5.49 16 23 C -0.06 -0.89 9.33 -38.62 -0.36 -1.25 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 27 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 28 H 0.07 0.90 5.07 -51.93 -0.26 0.63 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.16 1.58 3.74 -52.49 -0.20 1.38 16 33 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 34 H 0.41 1.97 9.11 45.56 0.42 2.38 16 35 H 0.16 2.65 7.64 -52.49 -0.40 2.25 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -34.92 309.89 -5.61 -40.53 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.81 Total: 0.03 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -1.88 Total: 7.67 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.20 Total: -42.83 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.78 Total: -26.58 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.92 -5.61 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124618394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.931 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds