Wall clock time and date at job start Tue Mar 31 2020 01:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46816 * 2 1 4 4 C 1.46504 * 119.99832 * 277.43415 * 3 2 1 5 5 C 1.50697 * 109.46945 * 269.99679 * 4 3 2 6 6 H 1.08001 * 120.00003 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00053 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99682 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00200 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47364 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47435 * 120.00317 * 9 7 5 12 12 H 1.48503 * 109.47317 * 240.00563 * 9 7 5 13 13 C 1.34778 * 120.00404 * 97.43442 * 3 2 1 14 14 O 1.21506 * 120.00150 * 185.63483 * 13 3 2 15 15 C 1.48142 * 119.99548 * 5.63550 * 13 3 2 16 16 C 1.39804 * 120.88913 * 315.37691 * 15 13 3 17 17 C 1.38525 * 119.19669 * 180.02562 * 16 15 13 18 18 N 1.31452 * 121.04152 * 0.02562 * 17 16 15 19 19 C 1.32702 * 121.95558 * 359.72657 * 18 17 16 20 20 C 1.48071 * 119.66009 * 180.26872 * 19 18 17 21 21 O 1.21429 * 119.99938 * 180.27062 * 20 19 18 22 22 O 1.34678 * 119.99803 * 0.26748 * 20 19 18 23 23 C 1.39289 * 120.68294 * 0.53929 * 19 18 17 24 24 H 1.09001 * 109.47029 * 68.81856 * 1 2 3 25 25 H 1.09009 * 109.46686 * 188.80971 * 1 2 3 26 26 H 1.08994 * 109.47654 * 308.81126 * 1 2 3 27 27 H 1.08999 * 109.47497 * 239.99614 * 2 1 3 28 28 H 1.09002 * 109.46952 * 119.99484 * 2 1 3 29 29 H 1.09001 * 109.47119 * 30.00153 * 4 3 2 30 30 H 1.09001 * 109.46983 * 150.00242 * 4 3 2 31 31 H 0.97002 * 119.99980 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.40426 * 0.02562 * 16 15 13 33 33 H 1.08003 * 119.48430 * 179.97438 * 17 16 15 34 34 H 0.96694 * 117.00021 * 179.97438 * 22 20 19 35 35 H 1.07994 * 120.55003 * 179.75303 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1076 2.1266 -1.2581 5 6 3.4666 1.9126 -1.8733 6 1 4.1911 1.2840 -1.3769 7 6 3.7847 2.5185 -3.0702 8 7 2.9022 3.2836 -3.6748 9 14 5.4689 2.2528 -3.8331 10 1 6.2714 1.3573 -2.9616 11 1 5.3131 1.6311 -5.1727 12 1 6.1616 3.5591 -3.9711 13 6 2.3853 1.9663 1.1574 14 8 2.6925 3.1418 1.1732 15 6 2.4141 1.1762 2.4101 16 6 1.3663 0.3103 2.7368 17 6 1.4292 -0.4114 3.9176 18 7 2.4553 -0.2929 4.7306 19 6 3.4754 0.5121 4.4614 20 6 4.6082 0.6020 5.4106 21 8 5.5425 1.3403 5.1728 22 8 4.6024 -0.1352 6.5377 23 6 3.4888 1.2777 3.2978 24 1 -0.3633 0.3713 -0.9582 25 1 -0.3633 -1.0156 0.1574 26 1 -0.3634 0.6440 0.8007 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3382 1.7737 -1.9449 30 1 1.9606 3.1887 -1.0624 31 1 3.1261 3.7102 -4.5167 32 1 0.5180 0.2052 2.0766 33 1 0.6221 -1.0814 4.1747 34 1 5.3639 -0.0432 7.1264 35 1 4.3182 1.9351 3.0828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124618394.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:41 Heat of formation + Delta-G solvation = -101.529213 kcal Electronic energy + Delta-G solvation = -21236.938554 eV Core-core repulsion = 17813.658570 eV Total energy + Delta-G solvation = -3423.279984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18557 -41.10086 -39.95789 -37.29201 -37.21557 -35.13877 -33.85861 -32.85881 -31.65228 -29.38588 -26.70292 -26.14359 -24.66409 -23.96671 -23.07211 -20.76823 -19.28739 -18.85521 -18.58396 -18.04671 -17.63349 -17.09043 -17.01989 -16.85597 -16.26754 -15.81619 -15.47017 -15.09953 -14.82689 -14.57996 -14.32306 -14.24012 -13.64861 -13.33546 -13.10919 -13.06826 -12.70547 -12.69151 -12.53975 -12.21752 -12.12172 -12.06656 -11.74728 -11.37940 -11.09398 -10.67772 -10.64882 -10.43048 -9.60198 -8.27032 -6.41419 -0.79885 -0.31026 1.15702 1.34301 1.37119 1.47269 1.54589 1.80420 2.12076 2.36755 2.58975 3.03139 3.09051 3.33064 3.62989 3.64593 3.82588 4.04577 4.17910 4.35098 4.49551 4.52287 4.55903 4.82002 4.91875 4.94367 5.03888 5.17907 5.27931 5.37603 5.42528 5.49861 5.74987 6.00099 6.45484 6.53002 6.67308 6.88890 7.10703 7.31126 8.80561 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.004898 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.329237 B = 5714.676987 C = 6668.217497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 N -0.586 5.586 4 C 0.260 3.740 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.282 1.282 13 C 0.540 3.460 14 O -0.585 6.585 15 C -0.091 4.091 16 C -0.103 4.103 17 C 0.114 3.886 18 N -0.429 5.429 19 C 0.076 3.924 20 C 0.551 3.449 21 O -0.535 6.535 22 O -0.482 6.482 23 C -0.075 4.075 24 H 0.049 0.951 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.035 0.965 30 H 0.002 0.998 31 H 0.268 0.732 32 H 0.187 0.813 33 H 0.228 0.772 34 H 0.435 0.565 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -13.731 16.023 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.037 4.037 3 N -0.315 5.315 4 C 0.140 3.860 5 C -0.587 4.587 6 H 0.069 0.931 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.327 3.673 14 O -0.466 6.466 15 C -0.102 4.102 16 C -0.123 4.123 17 C -0.047 4.047 18 N -0.141 5.141 19 C -0.059 4.059 20 C 0.394 3.606 21 O -0.425 6.425 22 O -0.295 6.295 23 C -0.096 4.096 24 H 0.068 0.932 25 H 0.131 0.869 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.077 0.923 32 H 0.204 0.796 33 H 0.244 0.756 34 H 0.298 0.702 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.544 -13.343 16.307 21.787 hybrid contribution 1.633 1.279 -1.307 2.452 sum -3.912 -12.063 15.000 19.642 Atomic orbital electron populations 1.22327 0.93306 1.04636 1.02422 1.22120 0.96331 0.80991 1.04264 1.48214 1.61327 1.15288 1.06670 1.18838 0.96300 0.91096 0.79800 1.21711 1.00290 1.30327 1.06339 0.93052 1.25784 1.01222 0.94339 0.97332 1.70037 1.36444 1.31911 1.17949 0.85411 0.79113 0.78010 0.78542 1.19439 1.19120 1.20800 1.18669 0.77783 0.86582 0.84228 1.90750 1.50888 1.18245 1.86686 1.20270 0.96979 0.98357 0.94629 1.23590 0.98214 0.91644 0.98833 1.23721 0.95814 0.97103 0.88034 1.67622 1.00074 1.14633 1.31788 1.19751 0.94625 0.98350 0.93151 1.20294 0.83881 0.76078 0.80353 1.90940 1.36349 1.39056 1.76111 1.84605 1.51382 1.62078 1.31400 1.21969 0.98427 0.96864 0.92325 0.93216 0.86923 0.91482 0.90497 0.88245 0.94696 0.97967 0.92263 0.79624 0.75623 0.70221 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.13 71.98 0.66 -2.71 16 2 C 0.08 2.35 5.60 86.38 0.48 2.83 16 3 N -0.59 -24.06 2.46 -829.23 -2.04 -26.10 16 4 C 0.26 13.68 5.22 85.63 0.45 14.13 16 5 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.73 5.46 84.66 0.46 1.20 16 8 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.54 22.93 7.33 86.87 0.64 23.57 16 14 O -0.58 -31.22 16.55 -3.74 -0.06 -31.28 16 15 C -0.09 -2.85 5.12 -19.90 -0.10 -2.96 16 16 C -0.10 -2.03 7.53 22.72 0.17 -1.86 16 17 C 0.11 1.75 11.17 84.82 0.95 2.70 16 18 N -0.43 -9.44 10.09 -185.10 -1.87 -11.31 16 19 C 0.08 2.06 6.75 41.88 0.28 2.34 16 20 C 0.55 14.26 8.32 70.43 0.59 14.85 16 21 O -0.53 -17.11 17.11 20.06 0.34 -16.77 16 22 O -0.48 -8.56 13.24 -55.87 -0.74 -9.30 16 23 C -0.07 -2.39 9.33 22.89 0.21 -2.18 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.22 6.38 -2.39 -0.02 1.21 16 27 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 28 H 0.10 2.20 5.07 -2.39 -0.01 2.18 16 29 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 30 H 0.00 0.13 7.35 -2.39 -0.02 0.12 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.19 2.73 3.74 -2.91 -0.01 2.72 16 33 H 0.23 1.06 8.06 -2.91 -0.02 1.03 16 34 H 0.44 3.13 9.11 -74.06 -0.67 2.45 16 35 H 0.13 4.84 7.64 -2.91 -0.02 4.82 16 Total: -1.00 -81.98 309.89 3.45 -78.54 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 0.47 Total: 3.29 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.03 Total: 20.87 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -3.62 Total: -92.16 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.46 Total: -57.35 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -81.98 3.45 -78.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124618394.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.993 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds