Wall clock time and date at job start Tue Mar 31 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47262 * 2 1 4 4 C 1.50695 * 109.46938 * 119.99624 * 2 1 3 5 5 H 1.08003 * 120.00270 * 94.75577 * 4 2 1 6 6 C 1.37877 * 120.00037 * 274.76323 * 4 2 1 7 7 N 1.31518 * 119.99860 * 174.86961 * 6 4 2 8 8 Si 1.86800 * 120.00000 * 354.86415 * 6 4 2 9 9 H 1.48504 * 109.47077 * 275.07371 * 8 6 4 10 10 H 1.48500 * 109.47010 * 35.07313 * 8 6 4 11 11 H 1.48494 * 109.47016 * 155.07615 * 8 6 4 12 12 N 1.46497 * 109.47114 * 239.99427 * 2 1 3 13 13 C 1.46504 * 120.00341 * 300.00376 * 12 2 1 14 14 C 1.34777 * 119.99854 * 120.00250 * 12 2 1 15 15 O 1.21514 * 120.00105 * 4.38069 * 14 12 2 16 16 C 1.48143 * 120.00150 * 184.38331 * 14 12 2 17 17 C 1.39802 * 120.88938 * 23.90504 * 16 14 12 18 18 C 1.38524 * 119.19681 * 180.02562 * 17 16 14 19 19 N 1.31448 * 121.04218 * 0.02562 * 18 17 16 20 20 C 1.32704 * 121.95571 * 359.97438 * 19 18 17 21 21 C 1.48067 * 119.65552 * 179.97438 * 20 19 18 22 22 O 1.21428 * 120.00048 * 179.97438 * 21 20 19 23 23 O 1.34681 * 120.00416 * 0.02562 * 21 20 19 24 24 C 1.39281 * 120.68074 * 359.71769 * 20 19 18 25 25 H 1.08995 * 109.47327 * 295.05543 * 1 2 3 26 26 H 1.09007 * 109.46649 * 55.05270 * 1 2 3 27 27 H 1.09001 * 109.47251 * 175.04982 * 1 2 3 28 28 H 0.97002 * 119.99810 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47046 * 84.04466 * 13 12 2 30 30 H 1.08994 * 109.47126 * 204.04485 * 13 12 2 31 31 H 1.09002 * 109.46573 * 324.04565 * 13 12 2 32 32 H 1.08001 * 120.40065 * 359.97438 * 17 16 14 33 33 H 1.08011 * 119.47944 * 179.97438 * 18 17 16 34 34 H 0.96696 * 117.00117 * 179.97438 * 23 21 20 35 35 H 1.08003 * 120.55322 * 180.30484 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.2854 -1.7592 1.1831 6 6 2.1686 -0.0212 2.4169 7 7 2.5098 -0.6616 3.5138 8 14 1.8688 1.8219 2.4663 9 1 3.1098 2.5360 2.0720 10 1 0.7760 2.1711 1.5234 11 1 1.4825 2.2238 3.8426 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0358 -2.0833 15 8 3.1526 1.1018 -1.8526 16 6 3.2068 -0.7028 -3.3397 17 6 2.4581 -1.7559 -3.8733 18 6 2.8773 -2.3548 -5.0500 19 7 3.9642 -1.9484 -5.6676 20 6 4.7072 -0.9533 -5.2000 21 6 5.9222 -0.5373 -5.9370 22 8 6.6064 0.3728 -5.5151 23 8 6.2680 -1.1676 -7.0759 24 6 4.3530 -0.2926 -4.0262 25 1 -0.3634 0.4352 0.9309 26 1 -0.3633 0.5887 -0.8424 27 1 -0.3634 -1.0238 -0.0887 28 1 2.6060 -0.1768 4.3484 29 1 0.6862 -2.1470 -1.9057 30 1 2.4106 -2.5542 -2.0750 31 1 1.6330 -2.6223 -0.4753 32 1 1.5641 -2.0990 -3.3738 33 1 2.3025 -3.1692 -5.4661 34 1 7.0692 -0.8605 -7.5218 35 1 4.9566 0.5202 -3.6501 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124659376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:30 Heat of formation + Delta-G solvation = -61.132743 kcal Electronic energy + Delta-G solvation = -21270.071630 eV Core-core repulsion = 17848.543369 eV Total energy + Delta-G solvation = -3421.528262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12443 -39.97923 -38.76706 -36.33244 -35.79281 -33.62472 -32.37117 -31.80314 -30.19478 -27.01287 -25.45607 -25.33774 -24.61481 -22.33657 -21.22710 -19.26048 -18.29559 -17.79124 -17.15444 -16.69097 -16.27690 -16.01214 -15.71096 -15.43397 -14.86963 -14.43765 -14.12858 -13.77216 -13.62593 -13.24608 -12.88315 -12.60721 -12.36501 -12.29527 -11.83535 -11.75357 -11.30223 -11.21525 -11.09837 -10.79575 -10.52332 -10.12542 -10.04920 -9.85906 -9.54440 -9.40487 -9.28521 -8.68113 -7.93895 -6.24159 -4.27019 0.20114 0.70914 2.11963 2.57806 3.11184 3.24567 3.32334 3.38302 3.45281 3.71673 4.01596 4.31055 4.44373 4.62153 4.71420 4.76707 5.11093 5.12749 5.40449 5.46165 5.53140 5.63299 5.81757 6.10743 6.16820 6.18362 6.21520 6.28990 6.44755 6.78297 6.91589 7.24505 7.34569 7.48724 7.72308 7.89419 8.32230 8.58412 8.76012 9.36878 10.87630 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.004492 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.415129 B = 6232.103579 C = 6744.247450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.226 3.774 3 H 0.064 0.936 4 C -0.531 4.531 5 H 0.080 0.920 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.871 3.129 9 H -0.271 1.271 10 H -0.261 1.261 11 H -0.286 1.286 12 N -0.574 5.574 13 C 0.063 3.937 14 C 0.544 3.456 15 O -0.536 6.536 16 C -0.081 4.081 17 C -0.123 4.123 18 C 0.090 3.910 19 N -0.426 5.426 20 C 0.077 3.923 21 C 0.545 3.455 22 O -0.502 6.502 23 O -0.493 6.493 24 C -0.051 4.051 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.413 0.587 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -4.729 -17.687 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.569 4.569 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.185 1.185 11 H -0.212 1.212 12 N -0.303 5.303 13 C -0.080 4.080 14 C 0.330 3.670 15 O -0.414 6.414 16 C -0.092 4.092 17 C -0.143 4.143 18 C -0.071 4.071 19 N -0.138 5.138 20 C -0.059 4.059 21 C 0.387 3.613 22 O -0.389 6.389 23 O -0.303 6.303 24 C -0.072 4.072 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.271 0.729 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.150 -4.370 -17.763 18.293 hybrid contribution 0.151 1.371 0.694 1.545 sum 0.001 -2.998 -17.069 17.330 Atomic orbital electron populations 1.22303 0.97995 1.00459 1.00088 1.19349 0.90847 0.94872 0.82337 0.91858 1.21061 1.45610 0.98405 0.91855 0.90238 1.24890 0.93778 0.98309 0.95320 1.69879 1.46657 1.36358 0.99704 0.86984 0.79953 0.85993 0.77362 1.19592 1.18520 1.21191 1.48078 1.48021 1.11604 1.22640 1.22306 0.98844 0.83238 1.03628 1.18046 0.79920 0.86222 0.82790 1.90768 1.55377 1.18278 1.76987 1.20617 0.95548 0.96371 0.96701 1.23579 1.01221 0.93658 0.95880 1.22885 0.92866 0.99408 0.91923 1.67480 1.04587 1.10098 1.31641 1.19787 0.95194 0.96554 0.94362 1.20383 0.83470 0.78801 0.78630 1.90945 1.51884 1.28650 1.67377 1.84667 1.48004 1.60820 1.36857 1.22203 0.95066 0.97963 0.91976 0.92008 0.95446 0.93115 0.92264 0.92640 0.91087 0.89415 0.81341 0.81035 0.72925 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.89 37.16 0.33 -2.63 16 2 C 0.23 5.16 2.19 -69.08 -0.15 5.01 16 3 H 0.06 1.60 4.66 -51.93 -0.24 1.36 16 4 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.08 2.21 6.81 -52.48 -0.36 1.86 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 8 Si 0.87 21.28 26.20 -169.99 -4.45 16.83 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.26 -6.04 6.16 56.52 0.35 -5.69 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.57 -11.04 2.75 -176.27 -0.49 -11.53 16 13 C 0.06 0.89 7.69 59.85 0.46 1.35 16 14 C 0.54 10.60 7.54 -12.19 -0.09 10.51 16 15 O -0.54 -12.54 16.01 5.35 0.09 -12.46 16 16 C -0.08 -1.23 5.54 -104.68 -0.58 -1.81 16 17 C -0.12 -1.36 7.65 -38.89 -0.30 -1.66 16 18 C 0.09 0.89 11.17 -17.61 -0.20 0.69 16 19 N -0.43 -5.31 10.09 -9.86 -0.10 -5.41 16 20 C 0.08 1.05 6.74 -83.07 -0.56 0.49 16 21 C 0.55 7.05 8.32 34.76 0.29 7.34 16 22 O -0.50 -7.64 17.11 -19.21 -0.33 -7.96 16 23 O -0.49 -4.79 13.24 -40.44 -0.54 -5.33 16 24 C -0.05 -0.77 9.20 -38.63 -0.36 -1.12 16 25 H 0.06 1.27 6.76 -51.93 -0.35 0.92 16 26 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.05 0.90 7.50 -51.93 -0.39 0.51 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 0.61 7.22 -51.93 -0.38 0.24 16 30 H 0.07 0.84 4.99 -51.93 -0.26 0.58 16 31 H 0.09 1.39 6.58 -51.93 -0.34 1.05 16 32 H 0.17 1.49 4.48 -52.49 -0.23 1.25 16 33 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.41 1.84 9.11 45.56 0.42 2.26 16 35 H 0.16 2.58 7.49 -52.48 -0.39 2.18 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -34.60 298.98 -4.65 -39.25 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -2.56 Total: 1.34 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.55 Total: 6.02 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.19 Total: -42.20 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.78 Total: -25.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.45 Total: 16.83 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.60 -4.65 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124659376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.880 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds