Wall clock time and date at job start Tue Mar 31 2020 01:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47491 * 2 1 4 4 C 1.50701 * 109.47206 * 240.00435 * 2 1 3 5 5 H 1.08008 * 119.99974 * 240.00416 * 4 2 1 6 6 C 1.37878 * 119.99995 * 59.99894 * 4 2 1 7 7 N 1.31518 * 119.99988 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47507 * 59.99808 * 8 6 4 10 10 H 1.48501 * 109.47365 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46817 * 299.99887 * 8 6 4 12 12 N 1.46500 * 109.47377 * 120.00358 * 2 1 3 13 13 C 1.46500 * 119.99709 * 59.99517 * 12 2 1 14 14 C 1.34773 * 120.00392 * 240.00078 * 12 2 1 15 15 O 1.21522 * 119.99660 * 7.14094 * 14 12 2 16 16 C 1.48142 * 120.00104 * 187.13998 * 14 12 2 17 17 C 1.39800 * 120.88863 * 19.52164 * 16 14 12 18 18 C 1.38529 * 119.19234 * 180.02562 * 17 16 14 19 19 N 1.31447 * 121.04270 * 0.02562 * 18 17 16 20 20 C 1.32699 * 121.96182 * 359.97438 * 19 18 17 21 21 C 1.48061 * 119.66456 * 179.97438 * 20 19 18 22 22 O 1.21434 * 120.00319 * 180.02562 * 21 20 19 23 23 O 1.34676 * 119.99721 * 0.02562 * 21 20 19 24 24 C 1.39296 * 120.67532 * 359.72373 * 20 19 18 25 25 H 1.09000 * 109.47234 * 59.99680 * 1 2 3 26 26 H 1.09007 * 109.47027 * 299.99775 * 1 2 3 27 27 H 1.09002 * 109.47491 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99570 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47037 * 84.85992 * 13 12 2 30 30 H 1.08999 * 109.47045 * 204.85583 * 13 12 2 31 31 H 1.09003 * 109.47677 * 324.85719 * 13 12 2 32 32 H 1.07989 * 120.40533 * 0.02883 * 17 16 14 33 33 H 1.08006 * 119.47728 * 179.97438 * 18 17 16 34 34 H 0.96695 * 117.00159 * 180.02562 * 23 21 20 35 35 H 1.08003 * 120.54785 * 180.31016 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1200 -4.0080 9 1 1.8259 -2.5200 -4.0080 10 1 1.8270 -0.4195 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 2.9803 1.1587 1.9611 16 6 3.4167 -0.7721 3.2075 17 6 3.5650 -2.1614 3.1610 18 6 4.1526 -2.8144 4.2322 19 7 4.5696 -2.1485 5.2860 20 6 4.4506 -0.8299 5.3760 21 6 4.9375 -0.1312 6.5872 22 8 4.8313 1.0751 6.6764 23 8 5.4983 -0.8338 7.5902 24 6 3.8770 -0.0958 4.3405 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1620 -3.4843 29 1 2.3639 -2.7373 0.8951 30 1 1.7129 -2.3086 2.4953 31 1 0.6529 -2.2774 1.0657 32 1 3.2258 -2.7188 2.3006 33 1 4.2691 -3.8877 4.2013 34 1 5.8008 -0.3339 8.3607 35 1 3.7857 0.9779 4.4139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124659614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:34 Heat of formation + Delta-G solvation = -60.062118 kcal Electronic energy + Delta-G solvation = -21194.431142 eV Core-core repulsion = 17772.949306 eV Total energy + Delta-G solvation = -3421.481836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.07429 -39.92882 -38.65866 -36.31574 -35.67448 -33.65094 -32.37650 -31.73054 -29.39476 -26.97466 -25.40988 -25.27012 -24.52645 -22.29616 -21.20559 -19.34827 -18.26133 -17.61132 -16.90718 -16.51969 -16.26195 -15.97632 -15.47265 -15.16444 -14.81266 -14.66749 -14.10154 -13.77398 -13.60615 -13.14314 -12.85517 -12.63207 -12.21150 -11.76317 -11.66705 -11.37075 -11.13819 -11.07905 -10.87442 -10.82058 -10.38820 -10.25833 -10.05143 -9.95816 -9.46108 -9.31226 -9.20122 -8.52782 -7.81789 -6.16763 -4.26225 0.25005 0.75403 2.15079 2.61095 3.19470 3.21971 3.28038 3.29076 3.59017 3.77389 4.06283 4.30697 4.53509 4.68843 4.77806 4.83381 5.14351 5.16612 5.43327 5.50822 5.59799 5.78516 5.88056 6.06036 6.18396 6.26845 6.65272 6.70639 6.92456 7.22720 7.35392 7.38340 7.59264 7.74826 7.88620 8.04524 8.29324 8.62633 8.81047 9.40634 10.88537 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.004036 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.609029 B = 6936.621942 C = 7245.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.579 5.579 13 C 0.068 3.932 14 C 0.543 3.457 15 O -0.535 6.535 16 C -0.082 4.082 17 C -0.127 4.127 18 C 0.089 3.911 19 N -0.427 5.427 20 C 0.074 3.926 21 C 0.546 3.454 22 O -0.503 6.503 23 O -0.494 6.494 24 C -0.052 4.052 25 H 0.096 0.904 26 H 0.013 0.987 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.172 0.828 34 H 0.412 0.588 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -8.769 13.983 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.309 5.309 13 C -0.075 4.075 14 C 0.329 3.671 15 O -0.413 6.413 16 C -0.093 4.093 17 C -0.147 4.147 18 C -0.072 4.072 19 N -0.139 5.139 20 C -0.061 4.061 21 C 0.388 3.612 22 O -0.390 6.390 23 O -0.304 6.304 24 C -0.073 4.073 25 H 0.114 0.886 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.270 0.730 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.225 -8.292 14.122 16.913 hybrid contribution 0.133 0.154 -1.101 1.120 sum 4.358 -8.138 13.021 15.961 Atomic orbital electron populations 1.22101 0.97884 0.99532 1.01139 1.19063 0.91227 0.94551 0.79279 0.91623 1.21233 1.32382 1.13254 0.90122 0.92202 1.24891 0.94809 0.94936 0.99014 1.69864 1.35964 1.22395 1.24098 0.86519 0.79253 0.79551 0.81854 1.20150 1.21100 1.20193 1.48189 1.47869 1.11764 1.23100 1.22240 1.02224 0.83389 0.99696 1.18002 0.80244 0.86886 0.81951 1.90771 1.61863 1.14086 1.74557 1.20703 0.98945 0.94078 0.95610 1.23793 0.94963 0.94627 1.01270 1.22893 0.94938 1.00806 0.88517 1.67468 1.13297 1.07563 1.25589 1.19782 1.02782 0.90286 0.93275 1.20399 0.74089 0.84490 0.82260 1.90941 1.53355 1.14871 1.79807 1.84670 1.71774 1.44573 1.29338 1.22206 0.91922 1.02731 0.90426 0.88584 0.96758 0.94948 0.92454 0.92040 0.91508 0.90506 0.80888 0.81093 0.72979 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.93 37.16 0.33 -3.05 16 2 C 0.26 6.29 2.63 -69.08 -0.18 6.11 16 3 H 0.07 1.87 6.92 -51.93 -0.36 1.51 16 4 C -0.53 -13.63 8.37 -34.44 -0.29 -13.92 16 5 H 0.06 1.48 7.50 -52.48 -0.39 1.09 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.58 -11.56 2.75 -176.27 -0.49 -12.05 16 13 C 0.07 0.99 7.95 59.85 0.48 1.47 16 14 C 0.54 10.93 7.56 -12.20 -0.09 10.84 16 15 O -0.53 -12.89 15.95 5.35 0.09 -12.81 16 16 C -0.08 -1.28 5.60 -104.68 -0.59 -1.87 16 17 C -0.13 -1.51 7.72 -38.89 -0.30 -1.81 16 18 C 0.09 0.93 11.17 -17.61 -0.20 0.74 16 19 N -0.43 -5.48 10.09 -9.86 -0.10 -5.58 16 20 C 0.07 1.03 6.75 -83.07 -0.56 0.47 16 21 C 0.55 7.10 8.32 34.76 0.29 7.39 16 22 O -0.50 -7.64 17.11 -19.22 -0.33 -7.97 16 23 O -0.49 -4.85 13.24 -40.43 -0.54 -5.38 16 24 C -0.05 -0.79 9.20 -38.62 -0.36 -1.15 16 25 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.03 0.67 6.70 -51.93 -0.35 0.32 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 0.82 6.98 -51.93 -0.36 0.46 16 30 H 0.07 0.77 5.10 -51.93 -0.26 0.51 16 31 H 0.08 1.14 6.45 -51.93 -0.33 0.80 16 32 H 0.17 1.77 4.15 -52.49 -0.22 1.55 16 33 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.41 1.87 9.11 45.56 0.42 2.28 16 35 H 0.16 2.58 7.44 -52.48 -0.39 2.19 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -32.94 301.75 -5.32 -38.26 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -2.55 Total: 2.53 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.56 Total: 6.87 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.04 Total: -41.26 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.78 Total: -26.16 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.94 -5.32 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124659614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.802 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds