Wall clock time and date at job start Tue Mar 31 2020 01:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47491 * 2 1 4 4 C 1.50701 * 109.47206 * 240.00435 * 2 1 3 5 5 H 1.08008 * 119.99974 * 240.00416 * 4 2 1 6 6 C 1.37878 * 119.99995 * 59.99894 * 4 2 1 7 7 N 1.31518 * 119.99988 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47507 * 59.99808 * 8 6 4 10 10 H 1.48501 * 109.47365 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46817 * 299.99887 * 8 6 4 12 12 N 1.46500 * 109.47377 * 120.00358 * 2 1 3 13 13 C 1.46500 * 119.99709 * 59.99517 * 12 2 1 14 14 C 1.34773 * 120.00392 * 240.00078 * 12 2 1 15 15 O 1.21522 * 119.99660 * 7.14094 * 14 12 2 16 16 C 1.48142 * 120.00104 * 187.13998 * 14 12 2 17 17 C 1.39800 * 120.88863 * 19.52164 * 16 14 12 18 18 C 1.38529 * 119.19234 * 180.02562 * 17 16 14 19 19 N 1.31447 * 121.04270 * 0.02562 * 18 17 16 20 20 C 1.32699 * 121.96182 * 359.97438 * 19 18 17 21 21 C 1.48061 * 119.66456 * 179.97438 * 20 19 18 22 22 O 1.21434 * 120.00319 * 180.02562 * 21 20 19 23 23 O 1.34676 * 119.99721 * 0.02562 * 21 20 19 24 24 C 1.39296 * 120.67532 * 359.72373 * 20 19 18 25 25 H 1.09000 * 109.47234 * 59.99680 * 1 2 3 26 26 H 1.09007 * 109.47027 * 299.99775 * 1 2 3 27 27 H 1.09002 * 109.47491 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99570 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47037 * 84.85992 * 13 12 2 30 30 H 1.08999 * 109.47045 * 204.85583 * 13 12 2 31 31 H 1.09003 * 109.47677 * 324.85719 * 13 12 2 32 32 H 1.07989 * 120.40533 * 0.02883 * 17 16 14 33 33 H 1.08006 * 119.47728 * 179.97438 * 18 17 16 34 34 H 0.96695 * 117.00159 * 180.02562 * 23 21 20 35 35 H 1.08003 * 120.54785 * 180.31016 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1200 -4.0080 9 1 1.8259 -2.5200 -4.0080 10 1 1.8270 -0.4195 -5.2205 11 1 3.8064 -1.1206 -4.0082 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 2.9803 1.1587 1.9611 16 6 3.4167 -0.7721 3.2075 17 6 3.5650 -2.1614 3.1610 18 6 4.1526 -2.8144 4.2322 19 7 4.5696 -2.1485 5.2860 20 6 4.4506 -0.8299 5.3760 21 6 4.9375 -0.1312 6.5872 22 8 4.8313 1.0751 6.6764 23 8 5.4983 -0.8338 7.5902 24 6 3.8770 -0.0958 4.3405 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1620 -3.4843 29 1 2.3639 -2.7373 0.8951 30 1 1.7129 -2.3086 2.4953 31 1 0.6529 -2.2774 1.0657 32 1 3.2258 -2.7188 2.3006 33 1 4.2691 -3.8877 4.2013 34 1 5.8008 -0.3339 8.3607 35 1 3.7857 0.9779 4.4139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124659614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:32 Heat of formation + Delta-G solvation = -84.389925 kcal Electronic energy + Delta-G solvation = -21195.486075 eV Core-core repulsion = 17772.949306 eV Total energy + Delta-G solvation = -3422.536769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.17901 -41.10121 -39.97000 -37.38329 -37.22291 -35.25030 -33.83695 -32.81023 -31.12802 -28.27459 -27.31913 -26.41775 -25.80526 -23.42786 -22.63910 -20.80376 -19.30124 -18.88397 -18.35120 -18.10051 -17.38919 -17.07265 -16.97044 -16.53041 -16.20641 -16.10983 -15.39489 -14.87714 -14.70913 -14.64979 -14.40847 -14.08919 -13.51633 -13.38661 -12.99375 -12.79360 -12.71779 -12.68166 -12.37748 -12.17716 -12.12868 -12.09521 -11.36591 -11.21415 -11.12054 -10.64614 -10.51476 -10.38913 -9.45993 -8.14874 -6.32215 -0.79479 -0.36058 1.15405 1.44822 1.47023 1.54206 1.66568 1.84207 2.13768 2.44644 2.64566 3.11901 3.14282 3.36847 3.65255 3.69035 3.81775 4.18766 4.34037 4.54124 4.55088 4.63234 4.73674 4.83008 4.86748 4.99181 5.02039 5.30193 5.38527 5.43154 5.54543 5.63347 5.98850 6.11701 6.46816 6.62728 6.74446 6.89749 7.13019 7.40367 8.89758 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032117 B = 0.004036 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.609029 B = 6936.621942 C = 7245.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.058 3.942 14 C 0.535 3.465 15 O -0.593 6.593 16 C -0.098 4.098 17 C -0.107 4.107 18 C 0.110 3.890 19 N -0.429 5.429 20 C 0.070 3.930 21 C 0.551 3.449 22 O -0.534 6.534 23 O -0.483 6.483 24 C -0.066 4.066 25 H 0.069 0.931 26 H 0.017 0.983 27 H 0.054 0.946 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.198 0.802 33 H 0.225 0.775 34 H 0.435 0.565 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.797 -12.885 14.744 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.160 3.840 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.182 1.182 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.083 4.083 14 C 0.323 3.677 15 O -0.475 6.475 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.051 4.051 19 N -0.141 5.141 20 C -0.065 4.065 21 C 0.394 3.606 22 O -0.424 6.424 23 O -0.296 6.296 24 C -0.087 4.087 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.215 0.785 33 H 0.241 0.759 34 H 0.298 0.702 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.001 -12.462 14.940 20.088 hybrid contribution -0.074 1.382 -1.251 1.866 sum 4.928 -11.080 13.689 18.287 Atomic orbital electron populations 1.21900 0.96919 1.00525 0.99991 1.18651 0.91919 0.92268 0.81201 0.97353 1.21539 1.32221 1.13386 0.90598 0.91147 1.25762 0.94983 0.95581 1.02156 1.70027 1.37242 1.23916 1.24575 0.85473 0.78372 0.79101 0.77854 1.18226 1.21432 1.20232 1.48132 1.47577 1.13817 1.21703 1.22642 1.02841 0.80274 1.02523 1.18692 0.79711 0.86523 0.82735 1.90730 1.63817 1.16854 1.76136 1.20280 1.00771 0.95634 0.94196 1.24045 0.93747 0.92521 1.02387 1.23735 0.92076 1.02732 0.86564 1.67597 1.13350 1.06644 1.26525 1.19784 1.02726 0.90808 0.93159 1.20289 0.73704 0.83961 0.82601 1.90934 1.54763 1.16217 1.80483 1.84609 1.70905 1.44442 1.29626 1.22030 0.93299 1.01942 0.91429 0.91260 0.96366 0.92697 0.92643 0.89748 0.87877 0.90424 0.78527 0.75883 0.70248 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.93 71.98 0.64 -5.64 16 2 C 0.26 13.10 2.63 44.24 0.12 13.22 16 3 H 0.01 0.52 6.92 -2.39 -0.02 0.50 16 4 C -0.54 -27.66 8.37 25.60 0.21 -27.45 16 5 H 0.07 3.38 7.50 -2.91 -0.02 3.35 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.79 11.32 21.45 0.24 -51.54 16 8 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 9 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.58 -23.22 2.75 -829.88 -2.28 -25.51 16 13 C 0.06 1.52 7.95 127.77 1.02 2.54 16 14 C 0.54 22.15 7.56 86.87 0.66 22.81 16 15 O -0.59 -30.76 15.95 -3.79 -0.06 -30.82 16 16 C -0.10 -2.99 5.60 -19.90 -0.11 -3.10 16 17 C -0.11 -2.13 7.72 22.72 0.18 -1.96 16 18 C 0.11 1.73 11.17 84.82 0.95 2.68 16 19 N -0.43 -9.47 10.09 -185.10 -1.87 -11.33 16 20 C 0.07 1.85 6.75 41.88 0.28 2.13 16 21 C 0.55 13.88 8.32 70.43 0.59 14.47 16 22 O -0.53 -16.49 17.11 20.05 0.34 -16.15 16 23 O -0.48 -8.41 13.24 -55.86 -0.74 -9.15 16 24 C -0.07 -2.03 9.20 22.89 0.21 -1.82 16 25 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 26 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.05 2.25 6.70 -2.39 -0.02 2.23 16 28 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.08 1.86 6.98 -2.39 -0.02 1.85 16 30 H 0.10 1.95 5.10 -2.39 -0.01 1.93 16 31 H 0.08 2.05 6.45 -2.39 -0.02 2.04 16 32 H 0.20 2.97 4.15 -2.92 -0.01 2.95 16 33 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.44 2.94 9.11 -74.06 -0.67 2.27 16 35 H 0.14 4.80 7.44 -2.91 -0.02 4.78 16 Total: -1.00 -76.70 301.75 3.33 -73.37 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.49 Total: 8.88 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 5.19 Total: 19.11 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -3.91 Total: -88.38 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.46 Total: -56.12 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -76.70 3.33 -73.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124659614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.022 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds