Wall clock time and date at job start Tue Mar 31 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21303 * 119.99707 * 2 1 4 4 C 1.46853 * 120.00308 * 179.97438 * 2 1 3 5 5 C 1.40022 * 120.11050 * 179.97438 * 4 2 1 6 6 C 1.37621 * 119.92833 * 179.72395 * 5 4 2 7 7 C 1.39017 * 120.14258 * 0.26341 * 6 5 4 8 8 O 1.35708 * 119.89164 * 180.02562 * 7 6 5 9 9 C 1.42896 * 117.00433 * 354.74133 * 8 7 6 10 10 C 1.52996 * 109.47193 * 184.94003 * 9 8 7 11 11 C 1.50697 * 115.55094 * 39.63502 * 10 9 8 12 12 H 1.08004 * 119.99817 * 264.73346 * 11 10 9 13 13 C 1.37877 * 120.00226 * 84.74057 * 11 10 9 14 14 N 1.31515 * 120.00232 * 184.84334 * 13 11 10 15 15 Si 1.86802 * 119.99940 * 4.83653 * 13 11 10 16 16 H 1.48498 * 109.46891 * 94.76423 * 15 13 11 17 17 H 1.48501 * 109.46862 * 214.75861 * 15 13 11 18 18 H 1.48495 * 109.47345 * 334.75961 * 15 13 11 19 19 C 1.52999 * 117.50043 * 253.92279 * 10 9 8 20 20 C 1.52996 * 60.00323 * 252.51319 * 19 10 9 21 21 C 1.39256 * 120.21291 * 0.03737 * 7 6 5 22 22 F 1.35097 * 119.95960 * 179.97438 * 21 7 6 23 23 C 1.37783 * 120.07342 * 359.96209 * 21 7 6 24 24 H 1.08999 * 109.47226 * 269.99972 * 1 2 3 25 25 H 1.09007 * 109.47316 * 30.00074 * 1 2 3 26 26 H 1.08997 * 109.47474 * 149.99818 * 1 2 3 27 27 H 1.08005 * 120.03651 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.93345 * 180.28237 * 6 5 4 29 29 H 1.08999 * 109.46567 * 304.93853 * 9 8 7 30 30 H 1.08993 * 109.47443 * 64.93429 * 9 8 7 31 31 H 0.96996 * 120.00655 * 179.97438 * 14 13 11 32 32 H 1.09004 * 117.49444 * 0.02562 * 19 10 9 33 33 H 1.08993 * 117.49999 * 145.02031 * 19 10 9 34 34 H 1.09001 * 117.50186 * 252.51231 * 20 19 10 35 35 H 1.08999 * 117.52363 * 107.47831 * 20 19 10 36 36 H 1.07998 * 120.07016 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6415 -1.2744 0.0000 6 6 4.3259 -2.4683 0.0063 7 6 3.6300 -3.6718 0.0077 8 8 4.3101 -4.8462 0.0144 9 6 5.7328 -4.7728 -0.0969 10 6 6.3102 -6.1862 -0.1953 11 6 5.5204 -7.1538 -1.0383 12 1 4.8039 -7.8149 -0.5735 13 6 5.7124 -7.1953 -2.4030 14 7 4.9572 -7.9706 -3.1501 15 14 7.0453 -6.1502 -3.1908 16 1 8.2819 -6.9581 -3.3440 17 1 6.5876 -5.6881 -4.5258 18 1 7.3261 -4.9739 -2.3292 19 6 7.0277 -6.7435 1.0358 20 6 7.8337 -6.3284 -0.1966 21 6 2.2375 -3.6761 0.0019 22 9 1.5665 -4.8487 0.0027 23 6 1.5434 -2.4859 -0.0044 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 4.1839 -0.3404 -0.0004 28 1 5.4059 -2.4704 0.0105 29 1 5.9986 -4.2086 -0.9908 30 1 6.1408 -4.2740 0.7821 31 1 5.0920 -7.9995 -4.1102 32 1 7.0879 -6.1033 1.9160 33 1 6.9283 -7.8102 1.2363 34 1 8.2645 -7.1220 -0.8071 35 1 8.4245 -5.4149 -0.1279 36 1 0.4634 -2.4893 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131899279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:54 Heat of formation + Delta-G solvation = -64.133050 kcal Electronic energy + Delta-G solvation = -21151.707760 eV Core-core repulsion = 17710.129434 eV Total energy + Delta-G solvation = -3441.578327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.49990 -40.19166 -39.16403 -37.37745 -36.18342 -32.13638 -31.77676 -30.48845 -29.07642 -27.23200 -25.48603 -23.43498 -22.61446 -21.79629 -20.09770 -19.15051 -18.18253 -17.07282 -16.77282 -16.10026 -15.90402 -15.65695 -15.15491 -14.95889 -14.68670 -14.55491 -14.45471 -14.18054 -13.47492 -12.87009 -12.68962 -12.59517 -12.47122 -12.25053 -12.14677 -12.02451 -11.40563 -11.22151 -11.07315 -10.62964 -10.49975 -10.27641 -9.88578 -9.64132 -9.22445 -9.01889 -8.66527 -8.56782 -8.01968 -6.13550 -4.15806 0.60077 1.14887 2.29994 3.20983 3.29425 3.32150 3.37640 3.62492 3.93189 4.31452 4.35325 4.58387 4.76534 4.87151 4.92792 5.05212 5.11039 5.19563 5.29480 5.45556 5.47987 5.63350 5.69949 5.77008 5.83482 5.93290 6.02679 6.10079 6.14955 6.26276 6.32118 6.53834 6.63116 6.81346 6.97044 7.40663 7.58289 7.73539 8.46565 8.92297 9.47752 10.98620 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.004784 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.074597 B = 5851.811618 C = 6010.043765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.404 3.596 3 O -0.469 6.469 4 C -0.209 4.209 5 C -0.024 4.024 6 C -0.211 4.211 7 C 0.152 3.848 8 O -0.259 6.259 9 C 0.090 3.910 10 C -0.004 4.004 11 C -0.476 4.476 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.874 3.126 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.260 1.260 19 C -0.176 4.176 20 C -0.190 4.190 21 C 0.052 3.948 22 F -0.124 7.124 23 C -0.070 4.070 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.138 0.862 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 13.087 6.728 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.284 3.716 3 O -0.346 6.346 4 C -0.210 4.210 5 C -0.042 4.042 6 C -0.230 4.230 7 C 0.102 3.898 8 O -0.169 6.169 9 C 0.015 3.985 10 C -0.005 4.005 11 C -0.514 4.514 12 H 0.099 0.901 13 C -0.124 4.124 14 N -0.529 5.529 15 Si 0.702 3.298 16 H -0.203 1.203 17 H -0.219 1.219 18 H -0.185 1.185 19 C -0.213 4.213 20 C -0.227 4.227 21 C 0.032 3.968 22 F -0.102 7.102 23 C -0.089 4.089 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.358 13.283 6.541 15.434 hybrid contribution 0.794 0.268 -0.637 1.053 sum -3.564 13.551 5.904 15.205 Atomic orbital electron populations 1.22244 0.93933 1.04932 1.04754 1.22228 0.91503 0.87313 0.70545 1.90534 1.72188 1.34236 1.37646 1.20043 0.94256 0.93971 1.12749 1.21182 0.92913 0.98076 0.92071 1.21209 1.01144 0.91052 1.09593 1.19710 0.91010 0.87364 0.91743 1.86377 1.21898 1.24598 1.83987 1.22834 0.76635 0.99867 0.99130 1.19263 0.90375 0.92123 0.98707 1.20132 1.22016 1.18484 0.90740 0.90118 1.24966 0.95674 0.94827 0.96971 1.69891 1.38415 1.39008 1.05609 0.86957 0.82535 0.81673 0.78670 1.20342 1.21869 1.18475 1.22935 1.05992 1.01231 0.91189 1.23004 0.95110 1.01969 1.02639 1.16825 0.87019 0.82340 1.10597 1.91558 1.79480 1.44958 1.94242 1.21210 1.00618 0.89656 0.97442 0.88445 0.89480 0.89422 0.84407 0.83988 0.92109 0.93436 0.92532 0.90756 0.89075 0.88886 0.90756 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 9.75 36.00 0.35 -1.16 16 2 C 0.40 4.66 7.22 -30.83 -0.22 4.44 16 3 O -0.47 -6.80 17.08 5.54 0.09 -6.71 16 4 C -0.21 -2.63 5.87 -105.07 -0.62 -3.25 16 5 C -0.02 -0.32 9.59 -39.14 -0.38 -0.69 16 6 C -0.21 -3.12 9.00 -39.52 -0.36 -3.47 16 7 C 0.15 2.70 6.70 -38.91 -0.26 2.44 16 8 O -0.26 -5.51 9.36 -18.83 -0.18 -5.69 16 9 C 0.09 1.78 4.62 37.16 0.17 1.96 16 10 C 0.00 -0.08 1.21 -155.66 -0.19 -0.27 16 11 C -0.48 -13.08 8.82 -34.44 -0.30 -13.38 16 12 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 15 Si 0.87 20.91 25.20 -169.99 -4.28 16.62 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.26 -5.70 5.23 56.52 0.30 -5.40 16 19 C -0.18 -3.39 9.88 -26.73 -0.26 -3.65 16 20 C -0.19 -3.75 7.33 -26.73 -0.20 -3.95 16 21 C 0.05 0.86 7.30 -39.37 -0.29 0.57 16 22 F -0.12 -2.31 17.10 2.25 0.04 -2.27 16 23 C -0.07 -0.88 9.33 -39.07 -0.36 -1.25 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.53 6.45 -51.93 -0.33 0.19 16 27 H 0.14 1.65 7.64 -52.48 -0.40 1.25 16 28 H 0.14 1.89 6.30 -52.49 -0.33 1.56 16 29 H 0.06 1.19 6.11 -51.93 -0.32 0.87 16 30 H 0.05 0.79 7.51 -51.93 -0.39 0.40 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.09 1.93 7.13 -51.93 -0.37 1.55 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.15 1.35 6.34 -52.49 -0.33 1.02 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -31.75 308.73 -6.16 -37.91 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.25 Total: 1.20 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.01 Total: -19.56 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.08 Total: -12.40 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.28 Total: 16.62 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.75 -6.16 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131899279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.219 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds