Wall clock time and date at job start Tue Mar 31 2020 01:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21303 * 119.99707 * 2 1 4 4 C 1.46853 * 120.00308 * 179.97438 * 2 1 3 5 5 C 1.40022 * 120.11050 * 179.97438 * 4 2 1 6 6 C 1.37621 * 119.92833 * 179.72395 * 5 4 2 7 7 C 1.39017 * 120.14258 * 0.26341 * 6 5 4 8 8 O 1.35708 * 119.89164 * 180.02562 * 7 6 5 9 9 C 1.42896 * 117.00433 * 354.74133 * 8 7 6 10 10 C 1.52996 * 109.47193 * 184.94003 * 9 8 7 11 11 C 1.50697 * 115.55094 * 39.63502 * 10 9 8 12 12 H 1.08004 * 119.99817 * 264.73346 * 11 10 9 13 13 C 1.37877 * 120.00226 * 84.74057 * 11 10 9 14 14 N 1.31515 * 120.00232 * 184.84334 * 13 11 10 15 15 Si 1.86802 * 119.99940 * 4.83653 * 13 11 10 16 16 H 1.48498 * 109.46891 * 94.76423 * 15 13 11 17 17 H 1.48501 * 109.46862 * 214.75861 * 15 13 11 18 18 H 1.48495 * 109.47345 * 334.75961 * 15 13 11 19 19 C 1.52999 * 117.50043 * 253.92279 * 10 9 8 20 20 C 1.52996 * 60.00323 * 252.51319 * 19 10 9 21 21 C 1.39256 * 120.21291 * 0.03737 * 7 6 5 22 22 F 1.35097 * 119.95960 * 179.97438 * 21 7 6 23 23 C 1.37783 * 120.07342 * 359.96209 * 21 7 6 24 24 H 1.08999 * 109.47226 * 269.99972 * 1 2 3 25 25 H 1.09007 * 109.47316 * 30.00074 * 1 2 3 26 26 H 1.08997 * 109.47474 * 149.99818 * 1 2 3 27 27 H 1.08005 * 120.03651 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.93345 * 180.28237 * 6 5 4 29 29 H 1.08999 * 109.46567 * 304.93853 * 9 8 7 30 30 H 1.08993 * 109.47443 * 64.93429 * 9 8 7 31 31 H 0.96996 * 120.00655 * 179.97438 * 14 13 11 32 32 H 1.09004 * 117.49444 * 0.02562 * 19 10 9 33 33 H 1.08993 * 117.49999 * 145.02031 * 19 10 9 34 34 H 1.09001 * 117.50186 * 252.51231 * 20 19 10 35 35 H 1.08999 * 117.52363 * 107.47831 * 20 19 10 36 36 H 1.07998 * 120.07016 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 6 2.2413 -1.2717 0.0006 5 6 3.6415 -1.2744 0.0000 6 6 4.3259 -2.4683 0.0063 7 6 3.6300 -3.6718 0.0077 8 8 4.3101 -4.8462 0.0144 9 6 5.7328 -4.7728 -0.0969 10 6 6.3102 -6.1862 -0.1953 11 6 5.5204 -7.1538 -1.0383 12 1 4.8039 -7.8149 -0.5735 13 6 5.7124 -7.1953 -2.4030 14 7 4.9572 -7.9706 -3.1501 15 14 7.0453 -6.1502 -3.1908 16 1 8.2819 -6.9581 -3.3440 17 1 6.5876 -5.6881 -4.5258 18 1 7.3261 -4.9739 -2.3292 19 6 7.0277 -6.7435 1.0358 20 6 7.8337 -6.3284 -0.1966 21 6 2.2375 -3.6761 0.0019 22 9 1.5665 -4.8487 0.0027 23 6 1.5434 -2.4859 -0.0044 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 4.1839 -0.3404 -0.0004 28 1 5.4059 -2.4704 0.0105 29 1 5.9986 -4.2086 -0.9908 30 1 6.1408 -4.2740 0.7821 31 1 5.0920 -7.9995 -4.1102 32 1 7.0879 -6.1033 1.9160 33 1 6.9283 -7.8102 1.2363 34 1 8.2645 -7.1220 -0.8071 35 1 8.4245 -5.4149 -0.1279 36 1 0.4634 -2.4893 -0.0085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131899279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:54 Heat of formation + Delta-G solvation = -84.083566 kcal Electronic energy + Delta-G solvation = -21152.572880 eV Core-core repulsion = 17710.129434 eV Total energy + Delta-G solvation = -3442.443446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.83829 -41.34990 -40.34310 -38.75518 -37.59625 -34.25274 -32.75031 -31.62162 -29.98263 -28.70391 -27.45004 -24.55309 -23.78298 -23.33579 -21.24252 -20.80365 -19.45498 -18.56743 -18.00732 -17.63979 -17.33467 -16.77374 -16.72347 -16.05725 -15.88079 -15.86756 -15.59653 -15.56016 -14.81384 -14.75169 -14.27173 -13.73849 -13.55158 -13.42139 -13.11451 -13.03662 -12.96389 -12.77296 -12.36866 -12.28872 -12.04063 -11.91217 -11.46725 -11.05508 -10.82779 -10.62018 -10.32543 -10.11820 -9.28578 -8.28719 -6.35501 -0.47150 0.03598 1.29421 1.33486 1.33872 1.45953 2.07326 2.35154 2.54079 2.97794 3.05039 3.16763 3.22995 3.55506 3.78396 4.00876 4.03803 4.16530 4.19114 4.27587 4.33940 4.38052 4.57769 4.64691 4.67844 4.72848 4.82788 4.91383 4.96118 5.00680 5.09324 5.19443 5.29875 5.44941 5.52754 5.66535 6.25281 6.40466 6.51046 6.72340 7.31946 8.88100 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.004784 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.074597 B = 5851.811618 C = 6010.043765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.409 3.591 3 O -0.500 6.500 4 C -0.205 4.205 5 C -0.025 4.025 6 C -0.204 4.204 7 C 0.118 3.882 8 O -0.303 6.303 9 C 0.095 3.905 10 C -0.042 4.042 11 C -0.475 4.475 12 H 0.020 0.980 13 C 0.015 3.985 14 N -0.952 5.952 15 Si 0.937 3.063 16 H -0.267 1.267 17 H -0.301 1.301 18 H -0.220 1.220 19 C -0.163 4.163 20 C -0.175 4.175 21 C 0.020 3.980 22 F -0.147 7.147 23 C -0.048 4.048 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.264 0.736 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 16.614 7.691 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.290 3.710 3 O -0.379 6.379 4 C -0.206 4.206 5 C -0.043 4.043 6 C -0.223 4.223 7 C 0.070 3.930 8 O -0.215 6.215 9 C 0.021 3.979 10 C -0.043 4.043 11 C -0.512 4.512 12 H 0.039 0.961 13 C -0.182 4.182 14 N -0.592 5.592 15 Si 0.761 3.239 16 H -0.192 1.192 17 H -0.228 1.228 18 H -0.143 1.143 19 C -0.200 4.200 20 C -0.212 4.212 21 C 0.000 4.000 22 F -0.126 7.126 23 C -0.066 4.066 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.172 0.828 28 H 0.176 0.824 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.133 0.867 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.437 16.824 7.544 18.755 hybrid contribution 0.357 -0.815 -0.841 1.224 sum -3.080 16.009 6.703 17.627 Atomic orbital electron populations 1.22304 0.90334 1.06294 1.06520 1.22688 0.93268 0.85952 0.69047 1.90538 1.73204 1.34980 1.39157 1.20401 0.94378 0.94726 1.11115 1.21456 0.93530 0.98141 0.91146 1.21347 1.01920 0.90246 1.08769 1.20046 0.91497 0.87355 0.94129 1.86309 1.22687 1.27012 1.85445 1.22756 0.76455 0.97867 1.00868 1.19256 0.91777 0.92849 1.00453 1.20262 1.21034 1.18418 0.91529 0.96142 1.25911 0.98296 0.96384 0.97564 1.70076 1.41276 1.41999 1.05860 0.85936 0.79246 0.81266 0.77471 1.19223 1.22824 1.14263 1.22993 1.04052 1.01115 0.91862 1.23070 0.93058 1.03143 1.01898 1.17340 0.87182 0.82808 1.12690 1.91493 1.79855 1.46521 1.94689 1.21513 1.02291 0.87961 0.94853 0.86238 0.88630 0.87614 0.82799 0.82384 0.92098 0.89594 0.92726 0.87087 0.90556 0.90223 0.86748 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.14 9.75 71.23 0.69 -1.44 16 2 C 0.41 8.09 7.22 27.94 0.20 8.29 16 3 O -0.50 -13.17 17.08 -3.10 -0.05 -13.22 16 4 C -0.20 -4.60 5.87 -20.15 -0.12 -4.72 16 5 C -0.02 -0.59 9.59 22.56 0.22 -0.37 16 6 C -0.20 -5.62 9.00 22.31 0.20 -5.42 16 7 C 0.12 4.18 6.70 22.70 0.15 4.33 16 8 O -0.30 -13.10 9.36 -90.28 -0.85 -13.95 16 9 C 0.09 3.59 4.62 71.98 0.33 3.92 16 10 C -0.04 -1.86 1.21 -52.93 -0.06 -1.92 16 11 C -0.47 -27.31 8.82 25.60 0.23 -27.09 16 12 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 13 C 0.02 0.88 5.47 84.65 0.46 1.35 16 14 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 15 Si 0.94 43.09 25.20 68.60 1.73 44.81 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 18 H -0.22 -8.62 5.23 99.48 0.52 -8.10 16 19 C -0.16 -5.96 9.88 30.59 0.30 -5.66 16 20 C -0.17 -6.35 7.33 30.59 0.22 -6.12 16 21 C 0.02 0.64 7.30 22.41 0.16 0.81 16 22 F -0.15 -5.71 17.10 44.97 0.77 -4.94 16 23 C -0.05 -1.10 9.33 22.60 0.21 -0.89 16 24 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.11 0.78 6.45 -2.39 -0.02 0.77 16 27 H 0.15 3.21 7.64 -2.91 -0.02 3.19 16 28 H 0.16 3.72 6.30 -2.91 -0.02 3.70 16 29 H 0.06 2.22 6.11 -2.39 -0.01 2.21 16 30 H 0.09 2.52 7.51 -2.39 -0.02 2.50 16 31 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.11 3.24 8.08 -2.38 -0.02 3.22 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.08 3.11 7.13 -2.39 -0.02 3.10 16 35 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.19 2.72 6.34 -2.91 -0.02 2.70 16 Total: -1.00 -75.64 308.73 6.02 -69.62 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.92 Total: 13.14 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.21 Total: -34.94 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.30 Total: -60.52 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.90 Total: -27.17 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.77 Total: -4.94 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.73 Total: 44.81 kcal Total: -75.64 6.02 -69.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131899279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.463 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds