Wall clock time and date at job start Mon Mar 30 2020 23:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46506 * 109.46782 * 240.00313 * 2 1 3 5 5 C 1.34768 * 119.99900 * 61.11654 * 4 2 1 6 6 O 1.21692 * 120.00420 * 359.97438 * 5 4 2 7 7 C 1.46382 * 120.00266 * 179.97438 * 5 4 2 8 8 H 1.08005 * 119.99230 * 0.02562 * 7 5 4 9 9 C 1.40044 * 120.00584 * 179.97438 * 7 5 4 10 10 N 1.30673 * 119.99766 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 120.00243 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46820 * 90.00015 * 11 9 7 13 13 H 1.48501 * 109.47373 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.47217 * 330.00364 * 11 9 7 15 15 C 1.50693 * 109.47294 * 120.00428 * 2 1 3 16 16 C 1.38233 * 120.00122 * 144.72279 * 15 2 1 17 17 C 1.38243 * 120.00079 * 180.02562 * 16 15 2 18 18 C 1.38231 * 119.99975 * 359.97438 * 17 16 15 19 19 N 1.48019 * 120.00191 * 179.97438 * 18 17 16 20 20 O 1.21801 * 119.99582 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00279 * 179.72667 * 19 18 17 22 22 C 1.38238 * 119.99850 * 0.26124 * 18 17 16 23 23 C 1.38231 * 119.99890 * 359.48759 * 22 18 17 24 24 H 1.08999 * 109.46822 * 299.99857 * 1 2 3 25 25 H 1.08997 * 109.47100 * 59.99563 * 1 2 3 26 26 H 1.09001 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47493 * 300.00196 * 3 2 1 29 29 H 1.08999 * 109.47158 * 60.00348 * 3 2 1 30 30 H 0.96999 * 119.99641 * 241.11886 * 4 2 1 31 31 H 0.96999 * 120.00186 * 180.02562 * 10 9 7 32 32 H 1.07993 * 120.00388 * 359.97438 * 16 15 2 33 33 H 1.07994 * 119.99858 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99654 * 179.72433 * 22 18 17 35 35 H 1.08005 * 120.00020 * 180.23691 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.7113 -0.2171 -2.4201 6 8 1.0282 0.7838 -2.5316 7 6 2.1996 -0.9067 -3.6154 8 1 2.8056 -1.7953 -3.5165 9 6 1.8802 -0.4150 -4.8872 10 7 1.1467 0.6598 -5.0069 11 14 2.5040 -1.2947 -6.4125 12 1 1.5143 -2.3191 -6.8325 13 1 2.6936 -0.3109 -7.5086 14 1 3.7997 -1.9535 -6.1089 15 6 2.0324 -0.7105 1.2303 16 6 3.1842 -1.4721 1.1668 17 6 3.6447 -2.1243 2.2954 18 6 2.9537 -2.0144 3.4875 19 7 3.4465 -2.7131 4.6958 20 8 4.4611 -3.3846 4.6396 21 8 2.8404 -2.6122 5.7474 22 6 1.7992 -1.2566 3.5498 23 6 1.3416 -0.6003 2.4226 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.5625 -1.4886 -1.1074 31 1 0.9251 1.0002 -5.8878 32 1 3.7238 -1.5584 0.2354 33 1 4.5443 -2.7197 2.2456 34 1 1.2569 -1.1743 4.4802 35 1 0.4417 -0.0051 2.4723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153959485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:39 Heat of formation + Delta-G solvation = -16.606519 kcal Electronic energy + Delta-G solvation = -21204.860981 eV Core-core repulsion = 17785.263521 eV Total energy + Delta-G solvation = -3419.597460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23110 -40.18510 -37.86178 -36.62281 -35.09883 -32.59403 -31.87458 -31.23214 -30.11307 -26.87254 -26.45234 -26.22302 -23.29975 -22.78869 -20.92137 -19.52661 -18.89285 -18.67203 -17.76687 -17.58389 -16.05523 -15.57390 -15.30098 -14.96964 -14.19925 -14.07940 -13.90919 -13.70489 -13.11698 -12.85991 -12.62370 -12.29792 -11.96537 -11.64005 -11.52657 -11.38579 -11.28908 -11.21417 -11.13145 -11.04584 -10.81292 -10.65029 -10.55489 -10.29462 -9.52225 -9.45727 -8.96472 -7.74721 -7.66343 -6.30825 -4.77848 -0.22630 0.83821 1.29167 1.35412 3.06015 3.13860 3.16141 3.17875 3.97596 4.24309 4.34590 4.39612 4.44563 4.51931 4.87066 4.89095 5.12945 5.39507 5.44924 5.52041 5.60776 5.66345 5.79369 5.98435 5.99615 6.12847 6.20096 6.26403 6.36654 6.41189 6.87804 6.90224 7.31335 7.58171 7.69418 7.89955 8.16808 8.90260 9.33280 10.45072 10.63033 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.003947 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.370177 B = 7092.209898 C = 7779.377990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 C -0.155 4.155 4 N -0.762 5.762 5 C 0.559 3.441 6 O -0.571 6.571 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.090 3.910 10 N -0.765 5.765 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.012 4.012 16 C -0.116 4.116 17 C -0.049 4.049 18 C -0.059 4.059 19 N 0.033 4.967 20 O -0.167 6.167 21 O -0.169 6.169 22 C -0.053 4.053 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.379 0.621 31 H 0.269 0.731 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -2.943 11.998 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.128 3.872 3 C -0.213 4.213 4 N -0.419 5.419 5 C 0.364 3.636 6 O -0.454 6.454 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.393 5.393 11 Si 0.731 3.269 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.013 4.013 16 C -0.135 4.135 17 C -0.068 4.068 18 C -0.142 4.142 19 N 0.551 4.449 20 O -0.382 6.382 21 O -0.384 6.384 22 C -0.072 4.072 23 C -0.134 4.134 24 H 0.069 0.931 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.213 0.787 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.078 -1.730 11.205 11.389 hybrid contribution 0.767 -1.127 -0.322 1.401 sum 1.845 -2.857 10.883 11.402 Atomic orbital electron populations 1.22303 0.94054 1.01931 1.03390 1.18923 0.94142 0.91931 0.82252 1.22239 1.00591 0.94859 1.03584 1.46463 1.59157 1.31626 1.04684 1.18131 0.80074 0.84355 0.81027 1.90534 1.42012 1.27383 1.85467 1.20871 1.34998 1.12846 0.89548 0.91521 1.25667 0.93317 0.94104 0.99985 1.69993 1.27239 1.17834 1.24262 0.86386 0.79856 0.79646 0.80986 1.19728 1.20412 1.18917 1.20833 0.92582 0.91991 0.95890 1.21190 0.96703 0.97056 0.98534 1.21051 0.99178 0.96815 0.89797 1.21098 1.01057 1.05910 0.86113 1.43661 0.99762 0.99016 1.02478 1.94527 1.13844 1.38055 1.91817 1.94516 1.58118 1.67563 1.18188 1.21019 0.92746 0.92859 1.00544 1.21168 1.01131 1.00267 0.90803 0.93129 0.88746 0.93100 0.93200 0.88327 0.93334 0.78719 0.92012 0.83025 0.83013 0.83106 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 7.86 37.16 0.29 -2.31 16 2 C 0.22 3.51 0.89 -132.97 -0.12 3.39 16 3 C -0.15 -2.59 8.37 37.16 0.31 -2.28 16 4 N -0.76 -14.81 4.87 -50.08 -0.24 -15.06 16 5 C 0.56 14.14 7.17 -12.99 -0.09 14.05 16 6 O -0.57 -16.13 11.22 5.20 0.06 -16.07 16 7 C -0.55 -14.25 9.54 -35.63 -0.34 -14.59 16 8 H 0.07 1.60 7.85 -52.48 -0.41 1.19 16 9 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 10 N -0.76 -21.46 11.83 55.55 0.66 -20.80 16 11 Si 0.91 19.11 29.56 -169.99 -5.02 14.08 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 15 C -0.01 -0.16 4.80 -104.63 -0.50 -0.66 16 16 C -0.12 -1.39 9.02 -39.58 -0.36 -1.75 16 17 C -0.05 -0.56 9.56 -39.58 -0.38 -0.94 16 18 C -0.06 -0.72 6.85 -79.95 -0.55 -1.27 16 19 N 0.03 0.46 4.45 33.96 0.15 0.61 16 20 O -0.17 -2.43 18.45 -29.46 -0.54 -2.97 16 21 O -0.17 -2.42 18.45 -29.46 -0.54 -2.97 16 22 C -0.05 -0.57 9.56 -39.58 -0.38 -0.95 16 23 C -0.11 -1.27 9.15 -39.58 -0.36 -1.63 16 24 H 0.05 0.65 6.52 -51.93 -0.34 0.31 16 25 H 0.09 1.93 6.24 -51.93 -0.32 1.61 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 2.05 6.08 -51.93 -0.32 1.73 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.38 6.50 6.38 -40.82 -0.26 6.24 16 31 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 32 H 0.15 1.74 6.42 -52.49 -0.34 1.40 16 33 H 0.15 1.49 7.61 -52.49 -0.40 1.10 16 34 H 0.15 1.36 7.61 -52.48 -0.40 0.96 16 35 H 0.15 1.38 6.33 -52.48 -0.33 1.05 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.77 302.17 -7.03 -37.79 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.52 Total: 7.52 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.57 Total: -6.70 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.56 Total: -35.24 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.03 Total: -22.01 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.77 -7.03 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153959485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.187 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds