Wall clock time and date at job start Mon Mar 30 2020 23:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47116 * 2 1 4 4 N 1.46506 * 109.46782 * 240.00313 * 2 1 3 5 5 C 1.34768 * 119.99900 * 61.11654 * 4 2 1 6 6 O 1.21692 * 120.00420 * 359.97438 * 5 4 2 7 7 C 1.46382 * 120.00266 * 179.97438 * 5 4 2 8 8 H 1.08005 * 119.99230 * 0.02562 * 7 5 4 9 9 C 1.40044 * 120.00584 * 179.97438 * 7 5 4 10 10 N 1.30673 * 119.99766 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 120.00243 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46820 * 90.00015 * 11 9 7 13 13 H 1.48501 * 109.47373 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.47217 * 330.00364 * 11 9 7 15 15 C 1.50693 * 109.47294 * 120.00428 * 2 1 3 16 16 C 1.38233 * 120.00122 * 144.72279 * 15 2 1 17 17 C 1.38243 * 120.00079 * 180.02562 * 16 15 2 18 18 C 1.38231 * 119.99975 * 359.97438 * 17 16 15 19 19 N 1.48019 * 120.00191 * 179.97438 * 18 17 16 20 20 O 1.21801 * 119.99582 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00279 * 179.72667 * 19 18 17 22 22 C 1.38238 * 119.99850 * 0.26124 * 18 17 16 23 23 C 1.38231 * 119.99890 * 359.48759 * 22 18 17 24 24 H 1.08999 * 109.46822 * 299.99857 * 1 2 3 25 25 H 1.08997 * 109.47100 * 59.99563 * 1 2 3 26 26 H 1.09001 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47493 * 300.00196 * 3 2 1 29 29 H 1.08999 * 109.47158 * 60.00348 * 3 2 1 30 30 H 0.96999 * 119.99641 * 241.11886 * 4 2 1 31 31 H 0.96999 * 120.00186 * 180.02562 * 10 9 7 32 32 H 1.07993 * 120.00388 * 359.97438 * 16 15 2 33 33 H 1.07994 * 119.99858 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99654 * 179.72433 * 22 18 17 35 35 H 1.08005 * 120.00020 * 180.23691 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.7113 -0.2171 -2.4201 6 8 1.0282 0.7838 -2.5316 7 6 2.1996 -0.9067 -3.6154 8 1 2.8056 -1.7953 -3.5165 9 6 1.8802 -0.4150 -4.8872 10 7 1.1467 0.6598 -5.0069 11 14 2.5040 -1.2947 -6.4125 12 1 1.5143 -2.3191 -6.8325 13 1 2.6936 -0.3109 -7.5086 14 1 3.7997 -1.9535 -6.1089 15 6 2.0324 -0.7105 1.2303 16 6 3.1842 -1.4721 1.1668 17 6 3.6447 -2.1243 2.2954 18 6 2.9537 -2.0144 3.4875 19 7 3.4465 -2.7131 4.6958 20 8 4.4611 -3.3846 4.6396 21 8 2.8404 -2.6122 5.7474 22 6 1.7992 -1.2566 3.5498 23 6 1.3416 -0.6003 2.4226 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.5625 -1.4886 -1.1074 31 1 0.9251 1.0002 -5.8878 32 1 3.7238 -1.5584 0.2354 33 1 4.5443 -2.7197 2.2456 34 1 1.2569 -1.1743 4.4802 35 1 0.4417 -0.0051 2.4723 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153959485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:39 Heat of formation + Delta-G solvation = -35.360419 kcal Electronic energy + Delta-G solvation = -21205.674211 eV Core-core repulsion = 17785.263521 eV Total energy + Delta-G solvation = -3420.410690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26775 -41.32321 -39.39971 -37.68900 -36.66095 -34.53874 -33.09986 -32.37270 -31.44188 -28.22742 -28.14733 -27.51509 -24.40362 -23.81667 -22.41381 -20.66495 -20.24934 -19.74960 -19.43208 -18.62038 -17.64781 -17.15762 -16.40598 -16.07192 -15.69567 -15.36535 -15.04304 -14.87179 -14.54056 -14.38082 -14.13823 -13.72417 -13.28392 -12.96232 -12.90767 -12.72459 -12.65243 -12.59854 -12.41105 -12.31148 -12.30829 -12.13794 -12.04341 -11.90602 -10.90305 -10.49904 -10.39801 -9.63386 -9.44395 -8.25274 -6.81477 -1.25875 -0.04097 0.26178 0.35682 1.40916 1.41483 1.55615 2.21623 2.26027 2.51788 2.95743 3.30210 3.38554 3.50735 3.65759 3.87631 3.93848 4.14523 4.26770 4.29091 4.61174 4.66036 4.68604 4.75862 4.78499 4.94973 4.97078 5.13748 5.16694 5.33784 5.42438 5.47525 5.49295 5.89566 6.24191 6.30122 6.48590 6.91350 7.55782 8.53554 8.71666 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030186 B = 0.003947 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.370177 B = 7092.209898 C = 7779.377990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 C -0.150 4.150 4 N -0.752 5.752 5 C 0.549 3.451 6 O -0.607 6.607 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.036 3.964 10 N -0.817 5.817 11 Si 0.987 3.013 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.252 1.252 15 C -0.019 4.019 16 C -0.117 4.117 17 C -0.044 4.044 18 C -0.066 4.066 19 N 0.033 4.967 20 O -0.186 6.186 21 O -0.173 6.173 22 C -0.043 4.043 23 C -0.104 4.104 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.391 0.609 31 H 0.273 0.727 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.174 0.826 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -4.046 13.186 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.127 3.873 3 C -0.208 4.208 4 N -0.408 5.408 5 C 0.353 3.647 6 O -0.493 6.493 7 C -0.614 4.614 8 H 0.100 0.900 9 C -0.180 4.180 10 N -0.446 5.446 11 Si 0.808 3.192 12 H -0.190 1.190 13 H -0.201 1.201 14 H -0.175 1.175 15 C -0.020 4.020 16 C -0.136 4.136 17 C -0.063 4.063 18 C -0.150 4.150 19 N 0.548 4.452 20 O -0.398 6.398 21 O -0.388 6.388 22 C -0.062 4.062 23 C -0.123 4.123 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.191 0.809 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.580 -2.875 12.438 12.863 hybrid contribution 0.599 -0.764 -0.573 1.127 sum 2.179 -3.639 11.866 12.601 Atomic orbital electron populations 1.22217 0.94085 1.01895 1.03020 1.18976 0.94184 0.91794 0.82376 1.22130 1.00537 0.95232 1.02893 1.46126 1.58475 1.31793 1.04447 1.18302 0.79707 0.83949 0.82772 1.90520 1.43358 1.28815 1.86623 1.21430 1.35610 1.13670 0.90640 0.89998 1.26766 0.92999 0.94603 1.03622 1.70147 1.29184 1.19983 1.25324 0.85162 0.79647 0.78256 0.76151 1.18989 1.20074 1.17505 1.20514 0.93560 0.92888 0.95045 1.21173 0.96503 0.97035 0.98871 1.21139 0.99480 0.96474 0.89193 1.21301 1.01792 1.06247 0.85618 1.43878 0.99581 0.98890 1.02830 1.94528 1.14376 1.38843 1.92020 1.94505 1.58010 1.67545 1.18770 1.21251 0.92023 0.91601 1.01281 1.21324 1.01340 0.99890 0.89708 0.89152 0.93420 0.92887 0.93152 0.92896 0.90023 0.77350 0.91751 0.82879 0.81679 0.80908 0.80888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 7.86 71.98 0.57 -4.35 16 2 C 0.21 6.75 0.89 2.85 0.00 6.76 16 3 C -0.15 -4.97 8.37 71.98 0.60 -4.37 16 4 N -0.75 -29.27 4.87 -430.57 -2.10 -31.37 16 5 C 0.55 28.53 7.17 86.36 0.62 29.15 16 6 O -0.61 -35.93 11.22 -4.32 -0.05 -35.97 16 7 C -0.58 -30.53 9.54 24.83 0.24 -30.29 16 8 H 0.08 3.91 7.85 -2.91 -0.02 3.89 16 9 C 0.04 1.89 5.50 85.30 0.47 2.36 16 10 N -0.82 -47.37 11.83 21.83 0.26 -47.11 16 11 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 12 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 13 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 15 C -0.02 -0.45 4.80 -19.87 -0.10 -0.55 16 16 C -0.12 -2.55 9.02 22.27 0.20 -2.35 16 17 C -0.04 -0.89 9.56 22.27 0.21 -0.68 16 18 C -0.07 -1.45 6.85 36.37 0.25 -1.20 16 19 N 0.03 0.85 4.45 -46.46 -0.21 0.65 16 20 O -0.19 -5.11 18.45 18.89 0.35 -4.77 16 21 O -0.17 -4.56 18.45 18.89 0.35 -4.22 16 22 C -0.04 -0.76 9.56 22.27 0.21 -0.55 16 23 C -0.10 -1.90 9.15 22.27 0.20 -1.70 16 24 H 0.09 2.09 6.52 -2.39 -0.02 2.08 16 25 H 0.05 2.00 6.24 -2.39 -0.01 1.99 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.05 2.28 6.08 -2.39 -0.01 2.26 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.39 13.16 6.38 -92.71 -0.59 12.57 16 31 H 0.27 14.46 8.29 -92.71 -0.77 13.69 16 32 H 0.15 3.25 6.42 -2.91 -0.02 3.23 16 33 H 0.17 2.87 7.61 -2.91 -0.02 2.85 16 34 H 0.17 2.37 7.61 -2.91 -0.02 2.35 16 35 H 0.17 2.35 6.33 -2.91 -0.02 2.33 16 Total: -1.00 -69.47 302.17 4.66 -64.81 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.55 Total: 24.42 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.48 Total: -7.76 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -2.05 Total: -77.83 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: 0.65 Total: -44.96 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.47 4.66 -64.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153959485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -69.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds