Wall clock time and date at job start Tue Mar 31 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21282 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.38255 * 119.99725 * 269.72837 * 16 15 13 18 18 C 1.38223 * 119.99863 * 179.78639 * 17 16 15 19 19 C 1.38256 * 119.99749 * 0.46142 * 18 17 16 20 20 C 1.38211 * 119.99843 * 359.76757 * 19 18 17 21 21 N 1.48021 * 119.99439 * 179.97438 * 20 19 18 22 22 O 1.21810 * 119.99876 * 180.02562 * 21 20 19 23 23 O 1.21804 * 120.00568 * 0.02571 * 21 20 19 24 24 C 1.38212 * 120.00389 * 89.99436 * 16 15 13 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 30 30 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 31 31 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 32 32 H 1.07997 * 120.00424 * 0.02562 * 17 16 15 33 33 H 1.07997 * 119.99434 * 180.25000 * 18 17 16 34 34 H 1.07998 * 119.99591 * 179.78969 * 19 18 17 35 35 H 1.07999 * 119.99722 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8590 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.6009 0.3919 -5.5658 18 6 1.6464 1.2835 -6.6210 19 6 2.7946 2.0164 -6.8576 20 6 3.8951 1.8611 -6.0361 21 7 5.1245 2.6455 -6.2898 22 8 6.0947 2.5083 -5.5661 23 8 5.1662 3.4281 -7.2222 24 6 3.8481 0.9725 -4.9780 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 2.2490 -1.6317 -1.1527 30 1 3.6480 -1.1211 -3.3986 31 1 1.9760 -1.5503 -3.8327 32 1 0.7053 -0.1833 -5.3832 33 1 0.7863 1.4050 -7.2627 34 1 2.8313 2.7106 -7.6841 35 1 4.7081 0.8510 -4.3362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173330117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:24 Heat of formation + Delta-G solvation = -24.518304 kcal Electronic energy + Delta-G solvation = -20690.662168 eV Core-core repulsion = 17270.721628 eV Total energy + Delta-G solvation = -3419.940541 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19963 -40.00917 -38.61510 -36.58574 -34.96276 -33.29989 -32.44667 -31.97893 -29.47962 -27.48963 -26.62380 -25.32653 -22.93327 -22.37001 -21.07930 -19.61476 -18.93031 -18.64117 -17.55784 -17.24942 -16.74268 -15.94168 -15.81669 -15.35568 -14.72993 -14.32795 -14.26321 -13.58336 -13.38426 -12.83446 -12.53764 -12.42623 -12.12660 -11.81755 -11.64521 -11.53396 -11.19666 -11.16493 -11.14149 -10.99259 -10.81131 -10.40084 -10.30500 -9.72972 -9.53624 -9.14113 -9.04399 -8.62858 -8.04309 -6.18889 -4.28823 -0.20844 0.78548 1.29825 1.36931 3.10197 3.18865 3.20686 3.27582 3.29488 3.96749 4.18669 4.28684 4.34586 4.55601 4.71220 4.77440 4.92111 5.13611 5.24314 5.31614 5.36366 5.55889 5.59080 5.77246 5.99455 6.12216 6.41298 6.72628 6.85401 7.05303 7.33376 7.45187 7.60924 7.61288 7.82092 8.06799 8.52892 8.68898 8.97985 9.38949 10.87077 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.003559 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.446444 B = 7865.470454 C = 8372.388681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.549 6.549 15 C -0.110 4.110 16 C -0.050 4.050 17 C -0.054 4.054 18 C -0.116 4.116 19 C -0.062 4.062 20 C -0.043 4.043 21 N 0.031 4.969 22 O -0.160 6.160 23 O -0.167 6.167 24 C -0.041 4.041 25 H 0.013 0.987 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -4.455 -17.069 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.428 6.428 15 C -0.150 4.150 16 C -0.052 4.052 17 C -0.072 4.072 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.126 4.126 21 N 0.550 4.450 22 O -0.377 6.377 23 O -0.382 6.382 24 C -0.060 4.060 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.186 -3.844 -16.799 17.234 hybrid contribution 0.685 -0.659 0.905 1.312 sum 0.871 -4.503 -15.894 16.543 Atomic orbital electron populations 1.22078 0.98417 0.99100 1.00922 1.18771 0.91042 0.94025 0.79937 0.93355 1.21203 1.32663 1.13313 0.90286 0.92014 1.24897 0.94760 0.94907 0.99125 1.69899 1.35780 1.22346 1.23995 0.86433 0.79181 0.79273 0.82137 1.20524 1.19799 1.21010 1.46536 1.64811 1.13615 1.10426 1.20171 0.79238 0.87596 0.84523 1.90702 1.51121 1.15934 1.85069 1.20825 1.04796 0.97602 0.91802 1.19368 0.92552 0.97323 0.95925 1.21525 0.97702 0.95614 0.92348 1.21149 0.97480 0.96192 0.98657 1.21011 0.90759 0.98219 0.98108 1.21037 0.86855 1.01639 1.03079 1.43641 1.02395 0.99682 0.99326 1.94556 1.26501 1.71470 1.45145 1.94509 1.89396 1.31935 1.22348 1.20903 0.99729 0.91661 0.93754 0.96749 0.95434 0.89096 0.92496 0.77768 0.87620 0.87523 0.84048 0.83575 0.83181 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.26 37.16 0.34 -3.16 16 2 C 0.26 6.46 2.56 -69.09 -0.18 6.28 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.71 -13.45 5.07 -54.93 -0.28 -13.73 16 13 C 0.50 8.87 7.79 -10.98 -0.09 8.78 16 14 O -0.55 -12.25 15.70 5.56 0.09 -12.17 16 15 C -0.11 -1.25 5.83 -29.03 -0.17 -1.42 16 16 C -0.05 -0.60 4.37 -104.62 -0.46 -1.05 16 17 C -0.05 -0.53 9.70 -39.58 -0.38 -0.92 16 18 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 19 C -0.06 -0.65 9.56 -39.58 -0.38 -1.03 16 20 C -0.04 -0.57 6.85 -79.95 -0.55 -1.11 16 21 N 0.03 0.46 4.45 33.96 0.15 0.61 16 22 O -0.16 -2.56 18.45 -29.46 -0.54 -3.10 16 23 O -0.17 -2.50 18.45 -29.46 -0.54 -3.04 16 24 C -0.04 -0.53 9.21 -39.59 -0.36 -0.90 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 30 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.11 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.15 1.30 7.61 -52.49 -0.40 0.90 16 35 H 0.15 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -32.16 315.54 -7.71 -39.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.93 Total: 3.83 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.01 Total: -8.37 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.50 Total: -36.96 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.00 Total: -18.31 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.16 -7.71 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173330117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.346 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds