Wall clock time and date at job start Tue Mar 31 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21282 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.38255 * 119.99725 * 269.72837 * 16 15 13 18 18 C 1.38223 * 119.99863 * 179.78639 * 17 16 15 19 19 C 1.38256 * 119.99749 * 0.46142 * 18 17 16 20 20 C 1.38211 * 119.99843 * 359.76757 * 19 18 17 21 21 N 1.48021 * 119.99439 * 179.97438 * 20 19 18 22 22 O 1.21810 * 119.99876 * 180.02562 * 21 20 19 23 23 O 1.21804 * 120.00568 * 0.02571 * 21 20 19 24 24 C 1.38212 * 120.00389 * 89.99436 * 16 15 13 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 30 30 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 31 31 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 32 32 H 1.07997 * 120.00424 * 0.02562 * 17 16 15 33 33 H 1.07997 * 119.99434 * 180.25000 * 18 17 16 34 34 H 1.07998 * 119.99591 * 179.78969 * 19 18 17 35 35 H 1.07999 * 119.99722 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8590 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.6009 0.3919 -5.5658 18 6 1.6464 1.2835 -6.6210 19 6 2.7946 2.0164 -6.8576 20 6 3.8951 1.8611 -6.0361 21 7 5.1245 2.6455 -6.2898 22 8 6.0947 2.5083 -5.5661 23 8 5.1662 3.4281 -7.2222 24 6 3.8481 0.9725 -4.9780 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 2.2490 -1.6317 -1.1527 30 1 3.6480 -1.1211 -3.3986 31 1 1.9760 -1.5503 -3.8327 32 1 0.7053 -0.1833 -5.3832 33 1 0.7863 1.4050 -7.2627 34 1 2.8313 2.7106 -7.6841 35 1 4.7081 0.8510 -4.3362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173330117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:24 Heat of formation + Delta-G solvation = -44.763544 kcal Electronic energy + Delta-G solvation = -20691.540068 eV Core-core repulsion = 17270.721628 eV Total energy + Delta-G solvation = -3420.818440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.29561 -41.09856 -39.89597 -37.73064 -36.73755 -34.42854 -34.15719 -32.83640 -31.13704 -28.67574 -27.63455 -27.33444 -23.92783 -23.53827 -22.52015 -21.19216 -20.00715 -19.77081 -18.85894 -18.65762 -17.56385 -17.49415 -17.15369 -16.79096 -16.07334 -15.65847 -15.37880 -14.85887 -14.55066 -14.33099 -13.92044 -13.71596 -13.28597 -13.11714 -12.98532 -12.80054 -12.76801 -12.71988 -12.41391 -12.36039 -12.28900 -12.23725 -12.14570 -11.10567 -10.89639 -10.60690 -10.52341 -10.13053 -9.74817 -8.18658 -6.36105 -1.23710 -0.04578 0.30276 0.36814 1.44353 1.45669 1.55692 1.81919 2.19689 2.38923 2.77174 3.12310 3.27623 3.48887 3.74791 3.93534 3.96982 4.03437 4.18180 4.46643 4.52084 4.71648 4.76370 4.78936 4.92209 4.99163 5.09126 5.10756 5.22921 5.43711 5.53365 5.61125 5.69526 5.90689 6.10390 6.44691 6.72895 6.96842 7.32422 7.57504 8.87418 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.003559 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.446444 B = 7865.470454 C = 8372.388681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.289 1.289 12 N -0.704 5.704 13 C 0.497 3.503 14 O -0.600 6.600 15 C -0.094 4.094 16 C -0.067 4.067 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.060 4.060 20 C -0.067 4.067 21 N 0.032 4.968 22 O -0.205 6.205 23 O -0.162 6.162 24 C -0.058 4.058 25 H 0.014 0.986 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.188 0.812 34 H 0.168 0.832 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -6.722 -18.389 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.188 1.188 11 H -0.215 1.215 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.482 6.482 15 C -0.133 4.133 16 C -0.068 4.068 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.079 4.079 20 C -0.150 4.150 21 N 0.546 4.454 22 O -0.412 6.412 23 O -0.381 6.381 24 C -0.078 4.078 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.205 0.795 34 H 0.186 0.814 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.722 -6.179 -18.096 19.136 hybrid contribution 0.889 0.097 1.203 1.499 sum 0.167 -6.082 -16.893 17.955 Atomic orbital electron populations 1.21878 0.98143 0.99577 0.99521 1.18311 0.91226 0.91751 0.82151 0.98831 1.21582 1.32526 1.13567 0.90825 0.90654 1.25801 0.94910 0.95542 1.02390 1.70057 1.37129 1.23955 1.24554 0.85363 0.79045 0.78032 0.78015 1.19517 1.18770 1.21532 1.46254 1.65072 1.14402 1.09570 1.21230 0.77640 0.87096 0.85590 1.90681 1.53070 1.18492 1.85982 1.20800 1.06755 0.97717 0.88024 1.19521 0.92834 0.97761 0.96715 1.21994 0.97742 0.95309 0.91610 1.21644 0.97776 0.94506 0.98405 1.21410 0.90277 0.98361 0.97846 1.21284 0.86639 1.02478 1.04575 1.43977 1.02945 0.99611 0.98911 1.94548 1.27806 1.72794 1.46065 1.94463 1.89527 1.31919 1.22153 1.20989 1.00329 0.92445 0.94015 0.96713 0.93782 0.91896 0.92631 0.75613 0.85307 0.83218 0.81155 0.79503 0.81416 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.40 9.26 71.98 0.67 -5.73 16 2 C 0.27 13.37 2.56 44.24 0.11 13.49 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -27.98 8.73 25.60 0.22 -27.76 16 5 H 0.08 3.55 7.74 -2.91 -0.02 3.53 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.11 11.32 21.45 0.24 -51.87 16 8 Si 0.97 41.17 29.54 68.60 2.03 43.19 16 9 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.70 -26.10 5.07 -446.10 -2.26 -28.36 16 13 C 0.50 17.06 7.79 87.66 0.68 17.75 16 14 O -0.60 -27.06 15.70 -3.04 -0.05 -27.11 16 15 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 16 C -0.07 -1.43 4.37 -19.87 -0.09 -1.52 16 17 C -0.05 -0.78 9.70 22.27 0.22 -0.57 16 18 C -0.11 -1.44 10.05 22.27 0.22 -1.22 16 19 C -0.06 -1.12 9.56 22.27 0.21 -0.90 16 20 C -0.07 -1.72 6.85 36.37 0.25 -1.47 16 21 N 0.03 0.97 4.45 -46.47 -0.21 0.76 16 22 O -0.21 -6.95 18.45 18.87 0.35 -6.60 16 23 O -0.16 -4.83 18.45 18.88 0.35 -4.48 16 24 C -0.06 -1.49 9.21 22.27 0.21 -1.28 16 25 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.41 12.03 8.54 -92.70 -0.79 11.24 16 30 H 0.13 2.00 8.09 -2.39 -0.02 1.98 16 31 H 0.15 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.17 2.46 7.61 -2.91 -0.02 2.44 16 35 H 0.14 3.72 7.61 -2.91 -0.02 3.69 16 Total: -1.00 -73.89 315.54 4.11 -69.78 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.33 Total: 14.41 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 3.32 Total: -9.73 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.23 Total: -79.47 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: 0.65 Total: -38.19 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -73.89 4.11 -69.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173330117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.021 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds