Wall clock time and date at job start Tue Mar 31 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47136 * 2 1 4 4 C 1.50699 * 109.46996 * 239.99878 * 2 1 3 5 5 H 1.08000 * 120.00268 * 239.99500 * 4 2 1 6 6 C 1.37879 * 119.99937 * 60.00221 * 4 2 1 7 7 N 1.31512 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 59.99788 * 8 6 4 10 10 H 1.48500 * 109.47102 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46971 * 299.99543 * 8 6 4 12 12 N 1.46500 * 109.47135 * 120.00024 * 2 1 3 13 13 C 1.34780 * 120.00034 * 274.99579 * 12 2 1 14 14 O 1.21287 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00021 * 180.02562 * 13 12 2 16 16 C 1.50702 * 109.47286 * 180.02562 * 15 13 12 17 17 C 1.38256 * 119.99963 * 269.72888 * 16 15 13 18 18 C 1.38218 * 120.00086 * 180.34241 * 17 16 15 19 19 C 1.38254 * 119.99721 * 359.90888 * 18 17 16 20 20 C 1.38212 * 120.00284 * 0.04312 * 19 18 17 21 21 N 1.48016 * 119.99980 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99955 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00260 * 0.02562 * 21 20 19 24 24 C 1.38215 * 120.00248 * 89.99938 * 16 15 13 25 25 H 1.09006 * 109.47046 * 300.00270 * 1 2 3 26 26 H 1.09000 * 109.47128 * 60.00024 * 1 2 3 27 27 H 1.08994 * 109.47015 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00077 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99994 * 95.00422 * 12 2 1 30 30 H 1.09003 * 109.47121 * 60.00523 * 15 13 12 31 31 H 1.09006 * 109.47664 * 300.00162 * 15 13 12 32 32 H 1.08001 * 120.00231 * 0.24980 * 17 16 15 33 33 H 1.07997 * 119.99809 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.99286 * 359.70252 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8062 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6500 -0.7285 3.5874 16 6 2.7001 0.2397 4.7412 17 6 3.8493 0.9697 4.9817 18 6 3.8977 1.8524 6.0441 19 6 2.7962 2.0068 6.8653 20 6 1.6470 1.2778 6.6243 21 7 0.4675 1.4435 7.5031 22 8 -0.5451 0.8007 7.2910 23 8 0.5095 2.2227 8.4383 24 6 1.5991 0.3938 5.5624 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7081 1.1608 -3.4844 29 1 2.2491 -1.6318 1.1526 30 1 3.6493 -1.1202 3.3978 31 1 1.9778 -1.5508 3.8326 32 1 4.7098 0.8491 4.3402 33 1 4.7956 2.4223 6.2322 34 1 2.8339 2.6968 7.6952 35 1 0.7012 -0.1761 5.3742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173330128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:27 Heat of formation + Delta-G solvation = -24.583139 kcal Electronic energy + Delta-G solvation = -20693.624191 eV Core-core repulsion = 17273.680839 eV Total energy + Delta-G solvation = -3419.943352 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.21096 -40.01019 -38.61466 -36.59745 -34.96069 -33.30003 -32.45033 -31.98110 -29.47665 -27.48467 -26.62941 -25.32210 -22.94003 -22.36562 -21.07670 -19.61789 -18.93671 -18.64883 -17.56860 -17.24787 -16.74367 -15.90190 -15.85094 -15.35423 -14.75817 -14.38851 -14.18384 -13.58348 -13.38652 -12.83602 -12.50689 -12.44607 -12.16588 -11.72425 -11.67680 -11.56273 -11.18877 -11.17581 -11.14672 -11.01164 -10.80336 -10.40062 -10.30205 -9.73066 -9.53687 -9.14907 -9.04401 -8.62644 -8.04201 -6.19010 -4.29298 -0.21273 0.78384 1.29454 1.36272 3.10249 3.19026 3.20689 3.26335 3.27048 3.96466 4.18163 4.28722 4.34129 4.55875 4.71461 4.77334 4.91782 5.13151 5.24863 5.31159 5.36164 5.55874 5.58623 5.77641 5.99715 6.11801 6.40868 6.74777 6.88588 7.06890 7.33951 7.45695 7.60486 7.60799 7.82491 8.07376 8.52915 8.68319 8.97907 9.38395 10.86830 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033281 B = 0.003435 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.108327 B = 8150.596316 C = 8553.351617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.501 3.499 14 O -0.550 6.550 15 C -0.110 4.110 16 C -0.050 4.050 17 C -0.053 4.053 18 C -0.116 4.116 19 C -0.062 4.062 20 C -0.044 4.044 21 N 0.031 4.969 22 O -0.161 6.161 23 O -0.167 6.167 24 C -0.042 4.042 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.027 0.973 28 H 0.266 0.734 29 H 0.390 0.610 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -2.978 15.581 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.428 6.428 15 C -0.150 4.150 16 C -0.052 4.052 17 C -0.071 4.071 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.127 4.127 21 N 0.550 4.450 22 O -0.377 6.377 23 O -0.382 6.382 24 C -0.061 4.061 25 H 0.033 0.967 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.041 -2.074 15.010 16.709 hybrid contribution 0.029 -0.837 -0.729 1.111 sum 7.070 -2.911 14.281 16.199 Atomic orbital electron populations 1.22081 0.98377 0.99181 1.00968 1.18764 0.91091 0.93951 0.79893 0.93383 1.21164 1.32754 1.13334 0.90305 0.92085 1.24895 0.94747 0.94928 0.99102 1.69887 1.35592 1.22379 1.24113 0.86493 0.79131 0.79613 0.81774 1.20110 1.21084 1.20174 1.46540 1.64808 1.13606 1.10440 1.20170 0.79267 0.87606 0.84492 1.90703 1.51098 1.16004 1.85029 1.20826 1.04766 0.97686 0.91750 1.19371 0.92707 0.97914 0.95180 1.21538 0.97933 0.92385 0.95265 1.21154 0.98345 0.99126 0.94848 1.21013 0.90476 0.96757 0.99837 1.21035 0.87706 1.06686 0.97233 1.43634 1.02218 0.98767 1.00400 1.94549 1.20930 1.45269 1.76983 1.94509 1.89521 1.32425 1.21731 1.20892 0.99559 0.94899 0.90727 0.96680 0.89100 0.95391 0.92425 0.77769 0.87457 0.87677 0.83987 0.83555 0.83180 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.47 2.56 -69.08 -0.18 6.30 16 3 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -13.45 5.07 -54.93 -0.28 -13.73 16 13 C 0.50 8.87 7.79 -10.99 -0.09 8.78 16 14 O -0.55 -12.25 15.70 5.55 0.09 -12.17 16 15 C -0.11 -1.25 5.83 -29.04 -0.17 -1.42 16 16 C -0.05 -0.60 4.37 -104.62 -0.46 -1.05 16 17 C -0.05 -0.53 9.70 -39.58 -0.38 -0.92 16 18 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 19 C -0.06 -0.64 9.56 -39.58 -0.38 -1.02 16 20 C -0.04 -0.57 6.85 -79.95 -0.55 -1.12 16 21 N 0.03 0.46 4.45 33.96 0.15 0.61 16 22 O -0.16 -2.54 18.45 -29.46 -0.54 -3.09 16 23 O -0.17 -2.48 18.45 -29.46 -0.54 -3.02 16 24 C -0.04 -0.53 9.21 -39.58 -0.36 -0.90 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 30 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.15 1.30 7.61 -52.49 -0.40 0.90 16 35 H 0.15 1.86 7.61 -52.49 -0.40 1.46 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -32.04 315.53 -7.71 -39.74 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.93 Total: 4.03 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.01 Total: -8.40 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.50 Total: -36.91 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.00 Total: -18.27 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.04 -7.71 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173330128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.160 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds