Wall clock time and date at job start Tue Mar 31 2020 01:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47136 * 2 1 4 4 C 1.50699 * 109.46996 * 239.99878 * 2 1 3 5 5 H 1.08000 * 120.00268 * 239.99500 * 4 2 1 6 6 C 1.37879 * 119.99937 * 60.00221 * 4 2 1 7 7 N 1.31512 * 120.00100 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 59.99788 * 8 6 4 10 10 H 1.48500 * 109.47102 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46971 * 299.99543 * 8 6 4 12 12 N 1.46500 * 109.47135 * 120.00024 * 2 1 3 13 13 C 1.34780 * 120.00034 * 274.99579 * 12 2 1 14 14 O 1.21287 * 119.99910 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00021 * 180.02562 * 13 12 2 16 16 C 1.50702 * 109.47286 * 180.02562 * 15 13 12 17 17 C 1.38256 * 119.99963 * 269.72888 * 16 15 13 18 18 C 1.38218 * 120.00086 * 180.34241 * 17 16 15 19 19 C 1.38254 * 119.99721 * 359.90888 * 18 17 16 20 20 C 1.38212 * 120.00284 * 0.04312 * 19 18 17 21 21 N 1.48016 * 119.99980 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99955 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00260 * 0.02562 * 21 20 19 24 24 C 1.38215 * 120.00248 * 89.99938 * 16 15 13 25 25 H 1.09006 * 109.47046 * 300.00270 * 1 2 3 26 26 H 1.09000 * 109.47128 * 60.00024 * 1 2 3 27 27 H 1.08994 * 109.47015 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00077 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99994 * 95.00422 * 12 2 1 30 30 H 1.09003 * 109.47121 * 60.00523 * 15 13 12 31 31 H 1.09006 * 109.47664 * 300.00162 * 15 13 12 32 32 H 1.08001 * 120.00231 * 0.24980 * 17 16 15 33 33 H 1.07997 * 119.99809 * 179.97438 * 18 17 16 34 34 H 1.07999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.99286 * 359.70252 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5202 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8062 -1.1210 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6500 -0.7285 3.5874 16 6 2.7001 0.2397 4.7412 17 6 3.8493 0.9697 4.9817 18 6 3.8977 1.8524 6.0441 19 6 2.7962 2.0068 6.8653 20 6 1.6470 1.2778 6.6243 21 7 0.4675 1.4435 7.5031 22 8 -0.5451 0.8007 7.2910 23 8 0.5095 2.2227 8.4383 24 6 1.5991 0.3938 5.5624 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7081 1.1608 -3.4844 29 1 2.2491 -1.6318 1.1526 30 1 3.6493 -1.1202 3.3978 31 1 1.9778 -1.5508 3.8326 32 1 4.7098 0.8491 4.3402 33 1 4.7956 2.4223 6.2322 34 1 2.8339 2.6968 7.6952 35 1 0.7012 -0.1761 5.3742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173330128.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:26 Heat of formation + Delta-G solvation = -44.639796 kcal Electronic energy + Delta-G solvation = -20694.493913 eV Core-core repulsion = 17273.680839 eV Total energy + Delta-G solvation = -3420.813074 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29733 -41.09925 -39.89703 -37.73129 -36.73875 -34.42726 -34.15542 -32.83832 -31.14422 -28.67633 -27.63604 -27.33616 -23.93982 -23.52726 -22.52166 -21.19686 -20.01150 -19.76789 -18.85271 -18.65776 -17.56935 -17.47779 -17.14301 -16.80588 -16.07069 -15.72325 -15.30078 -14.86257 -14.56092 -14.33571 -13.93593 -13.71089 -13.29119 -13.09388 -13.01274 -12.80188 -12.79343 -12.67368 -12.44169 -12.35816 -12.27654 -12.23477 -12.15268 -11.12219 -10.89620 -10.59861 -10.52101 -10.13210 -9.75199 -8.17646 -6.35550 -1.23524 -0.04686 0.30343 0.36740 1.45880 1.47406 1.55344 1.81880 2.19600 2.39522 2.77142 3.13131 3.27568 3.48826 3.74907 3.93350 3.96798 4.02968 4.18281 4.46524 4.52119 4.70887 4.75830 4.77552 4.90218 4.99111 5.09039 5.10242 5.22912 5.42623 5.53090 5.61159 5.68340 5.89787 6.09451 6.45079 6.73217 6.96839 7.32923 7.57550 8.88312 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033281 B = 0.003435 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.108327 B = 8150.596316 C = 8553.351617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.268 1.268 12 N -0.704 5.704 13 C 0.497 3.503 14 O -0.600 6.600 15 C -0.094 4.094 16 C -0.067 4.067 17 C -0.050 4.050 18 C -0.106 4.106 19 C -0.060 4.060 20 C -0.067 4.067 21 N 0.032 4.968 22 O -0.203 6.203 23 O -0.163 6.163 24 C -0.057 4.057 25 H 0.008 0.992 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.148 0.852 31 H 0.131 0.869 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.168 0.832 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -4.380 15.929 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.482 6.482 15 C -0.133 4.133 16 C -0.068 4.068 17 C -0.068 4.068 18 C -0.124 4.124 19 C -0.079 4.079 20 C -0.150 4.150 21 N 0.546 4.454 22 O -0.410 6.410 23 O -0.382 6.382 24 C -0.076 4.076 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.187 0.813 33 H 0.204 0.796 34 H 0.186 0.814 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.662 -3.566 15.370 18.502 hybrid contribution -0.706 -0.304 -0.778 1.094 sum 8.956 -3.870 14.592 17.553 Atomic orbital electron populations 1.21912 0.98730 0.99407 0.99330 1.18296 0.90793 0.91981 0.82213 0.98403 1.21544 1.32589 1.13628 0.90692 0.90456 1.25820 0.94877 0.95551 1.02449 1.70053 1.37017 1.24068 1.24634 0.85397 0.78751 0.78668 0.77525 1.18867 1.21547 1.19319 1.46255 1.65051 1.14399 1.09597 1.21231 0.77688 0.87114 0.85523 1.90683 1.53009 1.18625 1.85915 1.20800 1.07222 0.97402 0.87873 1.19519 0.93140 0.98903 0.95267 1.21991 0.97998 0.91303 0.95487 1.21632 0.98905 0.98382 0.93444 1.21404 0.89854 0.96149 1.00478 1.21280 0.87670 1.08389 0.97632 1.43959 1.02676 0.98309 1.00468 1.94541 1.22171 1.46489 1.77828 1.94467 1.89596 1.32105 1.22013 1.20985 0.99956 0.95353 0.91353 0.97257 0.91763 0.94021 0.92633 0.75603 0.83431 0.85064 0.81343 0.79585 0.81424 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.45 2.56 44.24 0.11 13.56 16 3 H 0.00 -0.12 7.58 -2.39 -0.02 -0.13 16 4 C -0.55 -27.66 8.73 25.60 0.22 -27.43 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.97 40.63 29.54 68.60 2.03 42.66 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 12 N -0.70 -26.09 5.07 -446.10 -2.26 -28.35 16 13 C 0.50 17.07 7.79 87.65 0.68 17.75 16 14 O -0.60 -27.08 15.70 -3.05 -0.05 -27.13 16 15 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 16 C -0.07 -1.44 4.37 -19.86 -0.09 -1.52 16 17 C -0.05 -0.82 9.70 22.27 0.22 -0.61 16 18 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 19 C -0.06 -1.12 9.56 22.27 0.21 -0.90 16 20 C -0.07 -1.70 6.85 36.37 0.25 -1.45 16 21 N 0.03 0.96 4.45 -46.47 -0.21 0.75 16 22 O -0.20 -6.73 18.45 18.89 0.35 -6.39 16 23 O -0.16 -4.84 18.45 18.89 0.35 -4.49 16 24 C -0.06 -1.43 9.21 22.27 0.21 -1.23 16 25 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.41 12.01 8.54 -92.71 -0.79 11.22 16 30 H 0.15 1.77 8.08 -2.39 -0.02 1.75 16 31 H 0.13 1.96 8.09 -2.38 -0.02 1.94 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.17 2.46 7.61 -2.91 -0.02 2.44 16 35 H 0.14 3.65 7.61 -2.91 -0.02 3.63 16 Total: -1.00 -73.24 315.53 4.11 -69.14 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.33 Total: 15.29 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 3.32 Total: -9.71 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.23 Total: -79.37 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: 0.65 Total: -38.00 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -73.24 4.11 -69.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173330128.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds