Wall clock time and date at job start Mon Mar 30 2020 23:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47153 * 2 1 4 4 C 1.38400 * 119.84264 * 100.00793 * 3 2 1 5 5 C 1.37915 * 120.14967 * 179.70150 * 4 3 2 6 6 C 1.39679 * 119.84518 * 0.28089 * 5 4 3 7 7 C 1.47700 * 120.15255 * 179.97438 * 6 5 4 8 8 O 1.21474 * 119.99963 * 326.92613 * 7 6 5 9 9 N 1.34772 * 120.00058 * 146.92980 * 7 6 5 10 10 C 1.46506 * 120.00225 * 353.86567 * 9 7 6 11 11 C 1.33335 * 120.00251 * 173.86865 * 9 7 6 12 12 H 1.08007 * 119.99325 * 16.30033 * 11 9 7 13 13 C 1.46781 * 120.00096 * 196.30275 * 11 9 7 14 14 N 1.29315 * 120.00289 * 11.71573 * 13 11 9 15 15 Si 1.86806 * 119.99586 * 191.71523 * 13 11 9 16 16 H 1.48490 * 109.47452 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46753 * 120.00241 * 15 13 11 18 18 H 1.48503 * 109.47181 * 239.99637 * 15 13 11 19 19 C 1.39649 * 119.69979 * 359.97438 * 6 5 4 20 20 C 1.37957 * 119.84039 * 0.02562 * 19 6 5 21 21 N 1.48014 * 119.92273 * 179.97438 * 20 19 6 22 22 O 1.31699 * 119.99945 * 6.36607 * 21 20 19 23 23 O 1.31700 * 119.99877 * 186.35521 * 21 20 19 24 24 H 1.08999 * 109.47240 * 59.99799 * 1 2 3 25 25 H 1.08996 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46626 * 299.99849 * 1 2 3 27 27 H 1.09000 * 109.47096 * 240.00315 * 2 1 3 28 28 H 1.09002 * 109.47593 * 119.99821 * 2 1 3 29 29 H 1.08002 * 119.92672 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.07516 * 180.29989 * 5 4 3 31 31 H 1.08998 * 109.46570 * 94.03859 * 10 9 7 32 32 H 1.09003 * 109.46921 * 214.03882 * 10 9 7 33 33 H 1.09001 * 109.46907 * 334.04005 * 10 9 7 34 34 H 0.97001 * 119.99832 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.08058 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0007 1.1822 5 6 2.9253 3.2984 1.1884 6 6 2.9616 4.0298 -0.0011 7 6 3.4596 5.4203 -0.0021 8 8 3.2785 6.1310 0.9662 9 7 4.1149 5.9006 -1.0774 10 6 4.4516 5.0078 -2.1892 11 6 4.4568 7.1883 -1.1295 12 1 4.4534 7.7847 -0.2290 13 6 4.8375 7.7953 -2.4105 14 7 4.6277 7.1578 -3.5159 15 14 5.6252 9.4889 -2.4440 16 1 5.7559 10.0016 -1.0566 17 1 6.9704 9.3968 -3.0660 18 1 4.7759 10.4142 -3.2363 19 6 2.5250 3.4403 -1.1893 20 6 2.0606 2.1412 -1.1810 21 7 1.5968 1.5148 -2.4393 22 8 1.7435 2.1495 -3.5839 23 8 1.0377 0.3227 -2.4143 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.4298 1.4341 2.1012 30 1 3.2621 3.7480 2.1107 31 1 3.6705 5.0614 -2.9474 32 1 5.4028 5.3133 -2.6251 33 1 4.5320 3.9847 -1.8219 34 1 4.8791 7.5592 -4.3625 35 1 2.5500 4.0002 -2.1125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174152886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:42 Heat of formation + Delta-G solvation = 37.660502 kcal Electronic energy + Delta-G solvation = -21680.146071 eV Core-core repulsion = 18262.901806 eV Total energy + Delta-G solvation = -3417.244265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.49312 -38.79294 -37.61274 -35.01941 -34.83902 -33.49338 -32.31275 -31.53535 -29.95625 -26.70388 -26.21891 -25.34166 -23.67634 -22.40897 -21.48599 -19.98734 -17.89205 -17.76328 -17.22888 -16.28420 -16.01496 -15.73849 -15.41498 -15.00038 -14.35642 -14.22655 -14.11294 -13.56931 -13.44431 -12.88800 -12.55976 -12.24406 -12.04993 -11.89494 -11.56445 -11.50918 -11.37222 -11.20815 -10.98502 -10.91087 -10.56557 -10.52655 -10.44198 -10.13000 -9.42294 -9.31666 -8.88807 -8.56638 -8.26770 -6.81493 -3.89199 -0.43738 0.89881 1.33266 1.36071 2.89438 3.06187 3.12179 3.20360 3.85311 3.98184 4.34671 4.43356 4.56484 4.75475 4.89763 5.10050 5.16068 5.20255 5.30212 5.34491 5.48049 5.73625 5.77266 5.85518 5.96992 6.01270 6.06663 6.23725 6.25215 6.34863 6.59683 6.61960 6.91974 7.01173 7.03501 7.75481 8.15296 8.87335 9.11316 9.81636 10.17794 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.005047 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.479013 B = 5546.006418 C = 6412.691198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.024 4.024 4 C -0.128 4.128 5 C -0.026 4.026 6 C -0.087 4.087 7 C 0.430 3.570 8 O -0.597 6.597 9 N -0.391 5.391 10 C 0.091 3.909 11 C -0.337 4.337 12 H 0.115 0.885 13 C 0.041 3.959 14 N -0.827 5.827 15 Si 0.935 3.065 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.044 4.044 20 C -0.009 4.009 21 N -0.011 5.011 22 O -0.183 6.183 23 O -0.176 6.176 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.283 0.717 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -10.829 4.054 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.027 4.027 4 C -0.147 4.147 5 C -0.046 4.046 6 C -0.092 4.092 7 C 0.222 3.778 8 O -0.486 6.486 9 N -0.103 5.103 10 C -0.052 4.052 11 C -0.467 4.467 12 H 0.132 0.868 13 C -0.173 4.173 14 N -0.459 5.459 15 Si 0.760 3.240 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.065 4.065 20 C -0.095 4.095 21 N 0.464 4.536 22 O -0.373 6.373 23 O -0.367 6.367 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.935 -10.147 4.737 11.364 hybrid contribution 0.246 0.532 -0.783 0.978 sum -1.688 -9.615 3.954 10.533 Atomic orbital electron populations 1.21708 0.93618 1.02375 1.01994 1.20951 0.97419 0.90706 1.04199 1.19927 0.95145 0.97096 0.90510 1.21003 1.01249 0.95551 0.96866 1.21723 0.91831 0.92372 0.98648 1.20371 1.00679 0.96258 0.91869 1.17307 0.87688 0.86104 0.86737 1.90579 1.64137 1.58952 1.34922 1.42577 1.43629 1.09028 1.15022 1.22090 1.03424 0.90183 0.89539 1.20781 1.45474 0.85846 0.94563 0.86760 1.27021 0.96138 1.00278 0.93832 1.69036 1.38481 1.39414 0.99014 0.85710 0.78622 0.80179 0.79500 1.18347 1.20086 1.20126 1.21786 0.91889 0.91635 1.01186 1.20085 1.11993 0.95310 0.82153 1.50440 0.97440 1.01588 1.04163 1.96308 1.62606 1.63372 1.15027 1.96140 1.43677 1.01546 1.95361 0.91763 0.91779 0.93125 0.88287 0.90669 0.83694 0.83480 0.91297 0.90092 0.94761 0.90459 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.26 37.16 0.34 -1.18 16 2 C -0.10 -1.07 5.33 -27.88 -0.15 -1.22 16 3 C -0.02 -0.33 5.15 -104.51 -0.54 -0.87 16 4 C -0.13 -1.59 9.65 -39.64 -0.38 -1.97 16 5 C -0.03 -0.40 9.61 -39.16 -0.38 -0.78 16 6 C -0.09 -1.66 5.22 -104.97 -0.55 -2.20 16 7 C 0.43 10.29 7.31 -12.40 -0.09 10.20 16 8 O -0.60 -16.17 16.36 5.39 0.09 -16.08 16 9 N -0.39 -9.63 2.93 -121.75 -0.36 -9.99 16 10 C 0.09 1.96 7.06 59.85 0.42 2.39 16 11 C -0.34 -8.85 9.64 -13.45 -0.13 -8.98 16 12 H 0.11 3.17 7.31 -52.48 -0.38 2.78 16 13 C 0.04 1.00 5.31 -15.16 -0.08 0.91 16 14 N -0.83 -19.86 10.36 56.00 0.58 -19.28 16 15 Si 0.94 18.79 29.66 -169.99 -5.04 13.75 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.04 -0.81 7.13 -39.16 -0.28 -1.09 16 20 C -0.01 -0.14 6.84 -80.01 -0.55 -0.69 16 21 N -0.01 -0.19 4.98 33.93 0.17 -0.02 16 22 O -0.18 -3.55 19.16 -31.57 -0.60 -4.16 16 23 O -0.18 -2.89 13.76 -31.57 -0.43 -3.32 16 24 H 0.06 0.84 6.28 -51.93 -0.33 0.51 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 1.21 6.02 -51.93 -0.31 0.90 16 28 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 29 H 0.15 1.27 8.03 -52.49 -0.42 0.85 16 30 H 0.15 2.14 7.97 -52.49 -0.42 1.72 16 31 H 0.07 1.53 6.44 -51.93 -0.33 1.20 16 32 H 0.08 1.81 6.73 -51.93 -0.35 1.47 16 33 H 0.03 0.65 5.76 -51.93 -0.30 0.35 16 34 H 0.28 6.27 8.26 -40.82 -0.34 5.94 16 35 H 0.17 3.20 4.82 -52.49 -0.25 2.94 16 LS Contribution 297.96 15.07 4.49 4.49 Total: -1.00 -28.96 297.96 -6.95 -35.91 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.49 Total: 4.19 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -2.35 Total: -5.48 kcal Atomic # 7 Polarization: -29.69 SS G_CDS: 0.39 Total: -29.30 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.95 Total: -23.56 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.04 Total: 13.75 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.96 -6.95 -35.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174152886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.572 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds