Wall clock time and date at job start Mon Mar 30 2020 23:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50708 * 109.47153 * 2 1 4 4 C 1.38400 * 119.84264 * 100.00793 * 3 2 1 5 5 C 1.37915 * 120.14967 * 179.70150 * 4 3 2 6 6 C 1.39679 * 119.84518 * 0.28089 * 5 4 3 7 7 C 1.47700 * 120.15255 * 179.97438 * 6 5 4 8 8 O 1.21474 * 119.99963 * 326.92613 * 7 6 5 9 9 N 1.34772 * 120.00058 * 146.92980 * 7 6 5 10 10 C 1.46506 * 120.00225 * 353.86567 * 9 7 6 11 11 C 1.33335 * 120.00251 * 173.86865 * 9 7 6 12 12 H 1.08007 * 119.99325 * 16.30033 * 11 9 7 13 13 C 1.46781 * 120.00096 * 196.30275 * 11 9 7 14 14 N 1.29315 * 120.00289 * 11.71573 * 13 11 9 15 15 Si 1.86806 * 119.99586 * 191.71523 * 13 11 9 16 16 H 1.48490 * 109.47452 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46753 * 120.00241 * 15 13 11 18 18 H 1.48503 * 109.47181 * 239.99637 * 15 13 11 19 19 C 1.39649 * 119.69979 * 359.97438 * 6 5 4 20 20 C 1.37957 * 119.84039 * 0.02562 * 19 6 5 21 21 N 1.48014 * 119.92273 * 179.97438 * 20 19 6 22 22 O 1.31699 * 119.99945 * 6.36607 * 21 20 19 23 23 O 1.31700 * 119.99877 * 186.35521 * 21 20 19 24 24 H 1.08999 * 109.47240 * 59.99799 * 1 2 3 25 25 H 1.08996 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46626 * 299.99849 * 1 2 3 27 27 H 1.09000 * 109.47096 * 240.00315 * 2 1 3 28 28 H 1.09002 * 109.47593 * 119.99821 * 2 1 3 29 29 H 1.08002 * 119.92672 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.07516 * 180.29989 * 5 4 3 31 31 H 1.08998 * 109.46570 * 94.03859 * 10 9 7 32 32 H 1.09003 * 109.46921 * 214.03882 * 10 9 7 33 33 H 1.09001 * 109.46907 * 334.04005 * 10 9 7 34 34 H 0.97001 * 119.99832 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.08058 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4586 2.0007 1.1822 5 6 2.9253 3.2984 1.1884 6 6 2.9616 4.0298 -0.0011 7 6 3.4596 5.4203 -0.0021 8 8 3.2785 6.1310 0.9662 9 7 4.1149 5.9006 -1.0774 10 6 4.4516 5.0078 -2.1892 11 6 4.4568 7.1883 -1.1295 12 1 4.4534 7.7847 -0.2290 13 6 4.8375 7.7953 -2.4105 14 7 4.6277 7.1578 -3.5159 15 14 5.6252 9.4889 -2.4440 16 1 5.7559 10.0016 -1.0566 17 1 6.9704 9.3968 -3.0660 18 1 4.7759 10.4142 -3.2363 19 6 2.5250 3.4403 -1.1893 20 6 2.0606 2.1412 -1.1810 21 7 1.5968 1.5148 -2.4393 22 8 1.7435 2.1495 -3.5839 23 8 1.0377 0.3227 -2.4143 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.4298 1.4341 2.1012 30 1 3.2621 3.7480 2.1107 31 1 3.6705 5.0614 -2.9474 32 1 5.4028 5.3133 -2.6251 33 1 4.5320 3.9847 -1.8219 34 1 4.8791 7.5592 -4.3625 35 1 2.5500 4.0002 -2.1125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174152886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:41 Heat of formation + Delta-G solvation = 20.796186 kcal Electronic energy + Delta-G solvation = -21680.877363 eV Core-core repulsion = 18262.901806 eV Total energy + Delta-G solvation = -3417.975557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89849 -40.45060 -39.05219 -36.91038 -36.13309 -34.81793 -34.08419 -32.87961 -31.20134 -28.38931 -27.66120 -26.97383 -25.05253 -23.69245 -22.69720 -21.57974 -19.46130 -19.23937 -18.97496 -17.88845 -17.34789 -17.10981 -16.91507 -16.54951 -16.04921 -15.78614 -15.31406 -14.89824 -14.69886 -14.32258 -14.01189 -13.75129 -13.67765 -13.28356 -13.05910 -12.89396 -12.67903 -12.49760 -12.38081 -12.31742 -12.22897 -12.12276 -11.84195 -11.31736 -11.16555 -10.70638 -10.59129 -10.16252 -10.09724 -8.64018 -5.88824 -1.80209 -0.42371 0.01337 0.03756 1.28385 1.38467 1.51753 1.75125 2.18209 2.35073 2.79817 2.90173 3.23430 3.26890 3.60512 3.73630 3.83338 3.90650 4.20798 4.31305 4.43085 4.44587 4.54027 4.62870 4.76928 4.79421 4.89907 5.02635 5.09802 5.10287 5.15545 5.24565 5.36808 5.40607 5.69639 5.82874 6.25620 6.97993 7.25801 7.93726 8.35263 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.005047 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.479013 B = 5546.006418 C = 6412.691198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C 0.001 3.999 4 C -0.100 4.100 5 C -0.014 4.014 6 C -0.112 4.112 7 C 0.426 3.574 8 O -0.636 6.636 9 N -0.409 5.409 10 C 0.111 3.889 11 C -0.394 4.394 12 H 0.085 0.915 13 C 0.014 3.986 14 N -0.847 5.847 15 Si 1.001 2.999 16 H -0.269 1.269 17 H -0.259 1.259 18 H -0.268 1.268 19 C -0.049 4.049 20 C -0.022 4.022 21 N -0.011 5.011 22 O -0.268 6.268 23 O -0.114 6.114 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.204 0.796 30 H 0.159 0.841 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.292 0.708 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -14.060 6.097 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.002 4.002 4 C -0.118 4.118 5 C -0.033 4.033 6 C -0.116 4.116 7 C 0.219 3.781 8 O -0.528 6.528 9 N -0.120 5.120 10 C -0.032 4.032 11 C -0.523 4.523 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.479 5.479 15 Si 0.822 3.178 16 H -0.193 1.193 17 H -0.184 1.184 18 H -0.193 1.193 19 C -0.069 4.069 20 C -0.109 4.109 21 N 0.462 4.538 22 O -0.436 6.436 23 O -0.325 6.325 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.221 0.779 30 H 0.177 0.823 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.358 -13.239 6.618 14.988 hybrid contribution 0.190 1.118 -1.175 1.633 sum -2.169 -12.121 5.442 13.463 Atomic orbital electron populations 1.21732 0.93053 1.03758 1.01281 1.21151 0.97615 0.88476 1.06154 1.20546 0.92064 0.98226 0.89323 1.21559 0.98016 0.93946 0.98295 1.21985 0.90627 0.93457 0.97270 1.20000 1.03123 0.94544 0.93931 1.18083 0.86309 0.87962 0.85769 1.90519 1.65174 1.60914 1.36182 1.42705 1.44386 1.09037 1.15889 1.21892 1.02008 0.90719 0.88602 1.20627 1.49921 0.87018 0.94688 0.89698 1.27780 0.95640 1.03504 0.92868 1.69075 1.38576 1.40797 0.99462 0.84786 0.78337 0.75718 0.78965 1.19273 1.18357 1.19294 1.21456 0.92810 0.92597 1.00052 1.20231 1.12920 0.95060 0.82719 1.50548 0.97348 1.01499 1.04445 1.96348 1.67072 1.64470 1.15711 1.96092 1.40147 1.00955 1.95336 0.94537 0.89439 0.91791 0.88980 0.86124 0.77866 0.82342 0.92727 0.91376 0.92617 0.89604 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.26 71.98 0.67 -1.63 16 2 C -0.10 -1.57 5.33 29.85 0.16 -1.41 16 3 C 0.00 0.02 5.15 -19.79 -0.10 -0.09 16 4 C -0.10 -1.90 9.65 22.23 0.21 -1.69 16 5 C -0.01 -0.39 9.61 22.54 0.22 -0.17 16 6 C -0.11 -4.27 5.22 -20.09 -0.10 -4.38 16 7 C 0.43 21.44 7.31 86.74 0.63 22.07 16 8 O -0.64 -36.17 16.36 -3.63 -0.06 -36.23 16 9 N -0.41 -21.47 2.93 -657.42 -1.92 -23.40 16 10 C 0.11 5.11 7.06 127.77 0.90 6.01 16 11 C -0.39 -22.14 9.64 86.70 0.84 -21.30 16 12 H 0.09 5.12 7.31 -2.91 -0.02 5.10 16 13 C 0.01 0.72 5.31 87.30 0.46 1.18 16 14 N -0.85 -42.51 10.36 23.25 0.24 -42.26 16 15 Si 1.00 39.81 29.66 68.60 2.03 41.85 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 18 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 19 C -0.05 -1.80 7.13 22.54 0.16 -1.64 16 20 C -0.02 -0.70 6.84 36.34 0.25 -0.45 16 21 N -0.01 -0.38 4.98 -46.55 -0.23 -0.61 16 22 O -0.27 -11.03 19.16 3.52 0.07 -10.96 16 23 O -0.11 -3.45 13.76 3.51 0.05 -3.40 16 24 H 0.04 0.80 6.28 -2.39 -0.02 0.79 16 25 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.73 6.02 -2.39 -0.01 1.72 16 28 H 0.12 1.03 8.00 -2.39 -0.02 1.01 16 29 H 0.20 1.70 8.03 -2.91 -0.02 1.68 16 30 H 0.16 4.15 7.97 -2.91 -0.02 4.12 16 31 H 0.05 2.64 6.44 -2.39 -0.02 2.62 16 32 H 0.07 3.25 6.73 -2.39 -0.02 3.23 16 33 H 0.06 2.25 5.76 -2.39 -0.01 2.24 16 34 H 0.29 13.30 8.26 -92.71 -0.77 12.53 16 35 H 0.14 5.91 4.82 -2.91 -0.01 5.90 16 Total: -1.00 -69.91 297.96 5.61 -64.30 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.14 Total: 14.22 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.30 Total: -3.50 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -1.92 Total: -66.28 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: 0.06 Total: -50.59 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.85 kcal Total: -69.91 5.61 -64.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174152886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.091 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds