Wall clock time and date at job start Tue Mar 31 2020 00:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46999 * 2 1 4 4 H 1.08998 * 109.46961 * 54.99838 * 3 2 1 5 5 C 1.50701 * 109.46995 * 175.00142 * 3 2 1 6 6 H 1.07998 * 120.00217 * 119.99534 * 5 3 2 7 7 C 1.37877 * 119.99611 * 299.99706 * 5 3 2 8 8 N 1.31510 * 120.00555 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99697 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47054 * 90.00262 * 9 7 5 11 11 H 1.48504 * 109.47241 * 209.99838 * 9 7 5 12 12 H 1.48497 * 109.47333 * 330.00216 * 9 7 5 13 13 O 1.45205 * 109.46720 * 294.99915 * 3 2 1 14 14 C 1.34689 * 116.99814 * 90.00530 * 13 3 2 15 15 O 1.21440 * 120.00388 * 359.97438 * 14 13 3 16 16 C 1.47894 * 119.99740 * 179.97438 * 14 13 3 17 17 C 1.39921 * 120.46876 * 180.02562 * 16 14 13 18 18 C 1.38448 * 118.35235 * 180.23093 * 17 16 14 19 19 C 1.39301 * 119.19308 * 359.48008 * 18 17 16 20 20 C 1.48345 * 119.56424 * 180.27408 * 19 18 17 21 21 N 1.34775 * 120.00133 * 180.25364 * 20 19 18 22 22 O 1.21491 * 120.00041 * 0.25541 * 20 19 18 23 23 N 1.32717 * 120.87148 * 0.53074 * 19 18 17 24 24 C 1.31411 * 121.80234 * 359.74586 * 23 19 18 25 25 H 1.09000 * 109.47061 * 60.00163 * 1 2 3 26 26 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47256 * 300.00312 * 1 2 3 28 28 H 1.08998 * 109.46892 * 240.00088 * 2 1 3 29 29 H 1.09000 * 109.47061 * 119.99837 * 2 1 3 30 30 H 0.96998 * 120.00436 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.81925 * 359.94867 * 17 16 14 32 32 H 1.08001 * 120.39971 * 179.72516 * 18 17 16 33 33 H 0.96998 * 119.99961 * 359.97438 * 21 20 19 34 34 H 0.97006 * 120.00147 * 180.02562 * 21 20 19 35 35 H 1.08008 * 119.63869 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.4428 2.1130 2.0836 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8395 0.0270 13 8 1.6558 2.0916 -1.2408 14 6 0.4686 2.7276 -1.2560 15 8 -0.2269 2.7393 -0.2606 16 6 0.0120 3.4117 -2.4852 17 6 -1.2193 4.0758 -2.5119 18 6 -1.6057 4.6973 -3.6871 19 6 -0.7577 4.6504 -4.7912 20 6 -1.1608 5.3189 -6.0527 21 7 -0.3494 5.2747 -7.1279 22 8 -2.2224 5.9061 -6.1166 23 7 0.4039 4.0114 -4.7310 24 6 0.8045 3.4044 -3.6365 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0617 2.9495 31 1 -1.8545 4.0989 -1.6387 32 1 -2.5514 5.2156 -3.7458 33 1 0.4984 4.8061 -7.0768 34 1 -0.6128 5.7121 -7.9527 35 1 1.7569 2.8950 -3.6262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188104602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:16 Heat of formation + Delta-G solvation = -118.592962 kcal Electronic energy + Delta-G solvation = -20944.695501 eV Core-core repulsion = 17520.675577 eV Total energy + Delta-G solvation = -3424.019924 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.04757 -41.10842 -39.79017 -37.69615 -35.53397 -34.99273 -33.64543 -33.39916 -32.69872 -29.37144 -27.09734 -25.18018 -24.78590 -23.27986 -22.09793 -21.43184 -19.54981 -19.14037 -18.74805 -18.00621 -17.71067 -17.19801 -16.93519 -16.40766 -16.23033 -16.06774 -15.39923 -14.96404 -14.77009 -14.66243 -14.37564 -14.04458 -13.80382 -13.40117 -13.29350 -13.12820 -12.80341 -12.56776 -12.12871 -11.79399 -11.70020 -11.62771 -11.40911 -11.22221 -10.83179 -10.82183 -10.79797 -10.53240 -10.45507 -8.25990 -6.42402 -1.01383 -0.02574 1.12530 1.44435 1.45720 1.56760 1.80569 1.82124 2.20865 2.41645 2.66447 3.01642 3.04568 3.55156 3.63240 3.77352 3.87610 3.97020 4.38738 4.40356 4.53218 4.54422 4.73984 4.83766 4.87625 5.09835 5.21140 5.23853 5.35594 5.52656 5.67751 5.74386 5.93833 6.09052 6.16571 6.47757 6.60336 6.87997 7.15242 7.28380 8.80668 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028274 B = 0.003876 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.060319 B = 7222.002737 C = 7863.443940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.131 4.131 3 C 0.227 3.773 4 H 0.011 0.989 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.978 3.022 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.261 1.261 13 O -0.351 6.351 14 C 0.497 3.503 15 O -0.530 6.530 16 C -0.156 4.156 17 C -0.014 4.014 18 C -0.116 4.116 19 C 0.091 3.909 20 C 0.579 3.421 21 N -0.812 5.812 22 O -0.564 6.564 23 N -0.459 5.459 24 C 0.160 3.840 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.270 0.730 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.422 0.578 34 H 0.418 0.582 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 6.194 -15.080 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.185 1.185 13 O -0.267 6.267 14 C 0.342 3.658 15 O -0.421 6.421 16 C -0.159 4.159 17 C -0.040 4.040 18 C -0.136 4.136 19 C -0.047 4.047 20 C 0.361 3.639 21 N -0.376 5.376 22 O -0.443 6.443 23 N -0.171 5.171 24 C 0.000 4.000 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.183 0.817 32 H 0.192 0.808 33 H 0.254 0.746 34 H 0.251 0.749 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.862 6.398 -15.259 17.553 hybrid contribution 0.544 -0.241 1.233 1.369 sum -5.318 6.157 -14.026 16.214 Atomic orbital electron populations 1.21726 0.96356 1.00663 1.00101 1.21890 0.94391 0.98037 1.02583 1.20457 0.94641 0.89277 0.78243 0.97153 1.21332 0.90374 1.39930 1.06960 0.91180 1.25754 1.03991 0.93918 0.94437 1.70002 1.37401 1.37915 1.09880 0.85243 0.77980 0.77836 0.78738 1.20004 1.20316 1.18543 1.86492 1.34621 1.62703 1.42853 1.21314 0.80263 0.76373 0.87864 1.90779 1.55851 1.59255 1.36254 1.20500 0.98441 1.03205 0.93765 1.21945 0.93058 0.89868 0.99104 1.22225 1.01856 0.98573 0.90965 1.21574 0.91588 0.96374 0.95179 1.17804 0.83530 0.79004 0.83520 1.43518 1.23662 1.56628 1.13743 1.90828 1.24318 1.45024 1.84119 1.67672 1.14435 1.07652 1.27314 1.23351 0.99059 0.91942 0.85631 0.94493 0.92065 0.94405 0.93251 0.89482 0.92068 0.81703 0.80846 0.74575 0.74864 0.79398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.56 71.98 0.62 -4.89 16 2 C -0.13 -6.30 5.49 30.60 0.17 -6.14 16 3 C 0.23 11.73 2.25 29.85 0.07 11.80 16 4 H 0.01 0.62 7.16 -2.39 -0.02 0.61 16 5 C -0.55 -29.69 8.90 25.60 0.23 -29.46 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -50.77 11.29 21.45 0.24 -50.53 16 9 Si 0.98 41.47 29.54 68.60 2.03 43.49 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 O -0.35 -15.57 9.08 -55.99 -0.51 -16.08 16 14 C 0.50 19.57 6.36 70.38 0.45 20.02 16 15 O -0.53 -23.41 13.59 20.03 0.27 -23.13 16 16 C -0.16 -4.60 5.89 -19.94 -0.12 -4.72 16 17 C -0.01 -0.34 9.71 22.73 0.22 -0.12 16 18 C -0.12 -2.47 9.62 22.58 0.22 -2.25 16 19 C 0.09 2.00 6.75 41.96 0.28 2.29 16 20 C 0.58 11.96 8.09 86.93 0.70 12.66 16 21 N -0.81 -10.46 8.86 -175.26 -1.55 -12.02 16 22 O -0.56 -14.87 17.15 -3.69 -0.06 -14.93 16 23 N -0.46 -10.35 9.52 -183.86 -1.75 -12.10 16 24 C 0.16 4.10 10.78 85.13 0.92 5.02 16 25 H 0.04 1.47 6.06 -2.39 -0.01 1.46 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.04 1.68 7.79 -2.39 -0.02 1.66 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.09 4.62 5.95 -2.39 -0.01 4.61 16 30 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.17 3.74 7.73 -2.91 -0.02 3.71 16 32 H 0.17 3.10 7.63 -2.91 -0.02 3.08 16 33 H 0.42 4.39 8.15 -92.71 -0.76 3.63 16 34 H 0.42 3.61 8.93 -92.70 -0.83 2.78 16 35 H 0.19 4.58 7.62 -2.91 -0.02 4.56 16 Total: -1.00 -65.89 307.47 2.44 -63.45 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.43 Total: 16.18 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.20 Total: 5.67 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -3.06 Total: -74.64 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: -0.30 Total: -54.15 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -65.89 2.44 -63.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188104602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.140 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds