Wall clock time and date at job start Tue Mar 31 2020 00:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34691 * 116.99532 * 270.00245 * 13 3 2 15 15 O 1.21442 * 120.00563 * 359.97438 * 14 13 3 16 16 C 1.47897 * 119.99424 * 179.97438 * 14 13 3 17 17 C 1.39918 * 120.46580 * 179.97438 * 16 14 13 18 18 C 1.38443 * 118.35245 * 180.02562 * 17 16 14 19 19 C 1.39304 * 119.19760 * 0.02562 * 18 17 16 20 20 C 1.48348 * 119.56853 * 179.97438 * 19 18 17 21 21 N 1.34776 * 120.00153 * 179.97438 * 20 19 18 22 22 O 1.21493 * 119.99591 * 0.02562 * 20 19 18 23 23 N 1.32719 * 120.86668 * 0.02562 * 19 18 17 24 24 C 1.31416 * 121.80412 * 359.69862 * 23 19 18 25 25 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 26 26 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.82486 * 0.02996 * 17 16 14 32 32 H 1.08000 * 120.40414 * 179.97438 * 18 17 16 33 33 H 0.96998 * 119.99849 * 0.02562 * 21 20 19 34 34 H 0.96992 * 120.00032 * 180.02562 * 21 20 19 35 35 H 1.08002 * 119.64255 * 180.31756 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 8 1.6560 2.0917 1.2407 14 6 0.4687 2.7276 1.2560 15 8 -0.2265 2.7399 0.2603 16 6 0.0117 3.4108 2.4855 17 6 -1.2196 4.0748 2.5122 18 6 -1.6040 4.7002 3.6860 19 6 -0.7587 4.6482 4.7920 20 6 -1.1621 5.3160 6.0538 21 7 -0.3512 5.2708 7.1294 22 8 -2.2240 5.9028 6.1178 23 7 0.4035 4.0101 4.7315 24 6 0.8022 3.3996 3.6381 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 -1.8545 4.0989 1.6388 32 1 -2.5475 5.2227 3.7434 33 1 0.4964 4.8019 7.0783 34 1 -0.6152 5.7070 7.9544 35 1 1.7525 2.8864 3.6292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188104627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:19 Heat of formation + Delta-G solvation = -97.548256 kcal Electronic energy + Delta-G solvation = -20944.053658 eV Core-core repulsion = 17520.946302 eV Total energy + Delta-G solvation = -3423.107357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90831 -39.68984 -38.70543 -35.97972 -34.11844 -33.64339 -32.58045 -31.85536 -31.28329 -27.49117 -25.85803 -23.76527 -23.31702 -21.95409 -20.82994 -19.73076 -18.52542 -17.79754 -17.29830 -16.68342 -16.25531 -15.64383 -15.53773 -15.19637 -15.11336 -14.62872 -14.31974 -13.64964 -13.41010 -13.18740 -12.98873 -12.72688 -12.23151 -11.60440 -11.45308 -11.27594 -11.04133 -10.73371 -10.70489 -10.37324 -10.17836 -10.16632 -9.99744 -9.85820 -9.68880 -9.47210 -9.41231 -8.91428 -8.52920 -6.25608 -4.33279 0.08827 0.98942 2.25945 3.05668 3.07850 3.20500 3.23939 3.28081 3.38478 3.76391 3.97018 4.26639 4.62552 4.66757 4.72510 4.96197 5.06628 5.31061 5.50611 5.77380 5.97017 6.15128 6.21825 6.26073 6.36893 6.44404 6.76194 6.85909 6.97074 7.06971 7.10721 7.44950 7.52438 7.64041 7.81464 7.92516 8.05644 8.44062 8.76723 9.32178 10.81093 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.003876 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.358570 B = 7223.064974 C = 7864.142387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.498 3.502 15 O -0.503 6.503 16 C -0.136 4.136 17 C -0.024 4.024 18 C -0.122 4.122 19 C 0.088 3.912 20 C 0.580 3.420 21 N -0.834 5.834 22 O -0.536 6.536 23 N -0.467 5.467 24 C 0.154 3.846 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.267 0.733 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.414 0.586 34 H 0.405 0.595 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 5.789 13.259 15.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.263 6.263 14 C 0.340 3.660 15 O -0.393 6.393 16 C -0.140 4.140 17 C -0.050 4.050 18 C -0.143 4.143 19 C -0.050 4.050 20 C 0.363 3.637 21 N -0.397 5.397 22 O -0.412 6.412 23 N -0.179 5.179 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.245 0.755 34 H 0.236 0.764 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.179 6.000 13.384 15.916 hybrid contribution 0.704 -0.215 -0.745 1.047 sum -5.475 5.785 12.639 14.940 Atomic orbital electron populations 1.21869 0.98370 0.99188 1.00672 1.22045 0.92635 0.99210 1.03598 1.20784 0.95199 0.88776 0.78165 0.93277 1.21023 0.89426 1.39160 1.06557 0.91175 1.24882 0.99326 0.94652 0.95002 1.69883 1.35469 1.37527 1.09559 0.86266 0.83721 0.78723 0.77404 1.20307 1.20962 1.19585 1.86517 1.33027 1.62141 1.44623 1.20651 0.81484 0.77142 0.86703 1.90797 1.55460 1.58227 1.34804 1.20747 0.96824 1.01316 0.95090 1.21835 0.93983 0.90837 0.98349 1.22058 1.01308 0.99095 0.91793 1.21262 0.91846 0.97307 0.94567 1.17895 0.83548 0.79117 0.83169 1.43636 1.24134 1.57821 1.14131 1.90829 1.23025 1.43594 1.83736 1.67609 1.14286 1.07720 1.28239 1.23303 0.99119 0.92163 0.85974 0.92740 0.94660 0.95086 0.87137 0.93797 0.92287 0.82495 0.82691 0.75549 0.76399 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.14 -3.24 5.48 -26.73 -0.15 -3.38 16 3 C 0.22 5.59 2.25 -27.88 -0.06 5.53 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -13.93 8.90 -34.44 -0.31 -14.24 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.17 11.28 55.43 0.63 -23.54 16 9 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 O -0.35 -7.57 9.08 -40.47 -0.37 -7.94 16 14 C 0.50 9.67 6.36 34.69 0.22 9.89 16 15 O -0.50 -10.83 13.60 -19.22 -0.26 -11.09 16 16 C -0.14 -2.06 5.89 -104.74 -0.62 -2.68 16 17 C -0.02 -0.31 9.71 -38.88 -0.38 -0.69 16 18 C -0.12 -1.43 9.62 -39.11 -0.38 -1.80 16 19 C 0.09 1.07 6.75 -82.93 -0.56 0.51 16 20 C 0.58 6.69 8.09 -12.10 -0.10 6.59 16 21 N -0.83 -6.52 8.86 30.65 0.27 -6.25 16 22 O -0.54 -7.62 17.15 5.37 0.09 -7.53 16 23 N -0.47 -5.75 9.52 -9.46 -0.09 -5.84 16 24 C 0.15 2.08 10.78 -17.16 -0.18 1.89 16 25 H 0.05 1.19 7.79 -51.93 -0.40 0.79 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.62 6.06 -51.93 -0.31 0.30 16 28 H 0.11 2.85 5.94 -51.93 -0.31 2.55 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.16 1.86 7.73 -52.48 -0.41 1.46 16 32 H 0.16 1.58 7.63 -52.49 -0.40 1.18 16 33 H 0.41 2.76 8.15 -40.82 -0.33 2.42 16 34 H 0.40 2.32 8.93 -40.82 -0.36 1.95 16 35 H 0.18 2.32 7.62 -52.49 -0.40 1.92 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -30.43 307.45 -6.09 -36.52 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.69 Total: 5.23 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.29 Total: 0.52 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.81 Total: -35.63 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.54 Total: -26.55 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.43 -6.09 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188104627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.025 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds