Wall clock time and date at job start Tue Mar 31 2020 01:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47288 * 2 1 4 4 C 1.46505 * 120.00131 * 274.99938 * 3 2 1 5 5 C 1.52991 * 109.47282 * 274.99751 * 4 3 2 6 6 S 1.65599 * 120.00246 * 94.99623 * 3 2 1 7 7 O 1.42096 * 106.40219 * 336.46677 * 6 3 2 8 8 O 1.42095 * 106.40773 * 203.54059 * 6 3 2 9 9 N 1.65606 * 107.21649 * 90.00095 * 6 3 2 10 10 C 1.47586 * 134.48958 * 90.00193 * 9 6 3 11 11 C 1.53949 * 86.11504 * 155.35964 * 10 9 6 12 12 O 1.42903 * 113.74102 * 269.15490 * 11 10 9 13 13 C 1.50694 * 113.74088 * 137.95266 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.92388 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.92552 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47807 * 134.45609 * 269.87206 * 9 6 3 22 22 H 1.09000 * 109.47041 * 60.00326 * 1 2 3 23 23 H 1.09003 * 109.47358 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47473 * 300.00162 * 1 2 3 25 25 H 1.08999 * 109.47178 * 240.00284 * 2 1 3 26 26 H 1.09000 * 109.46825 * 120.00182 * 2 1 3 27 27 H 1.08997 * 109.46913 * 35.00106 * 4 3 2 28 28 H 1.09006 * 109.46847 * 154.99657 * 4 3 2 29 29 H 1.09006 * 109.47257 * 60.00157 * 5 4 3 30 30 H 1.09000 * 109.47369 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47436 * 300.00034 * 5 4 3 32 32 H 1.08993 * 113.76952 * 41.05751 * 10 9 6 33 33 H 1.08995 * 113.86700 * 269.67100 * 10 9 6 34 34 H 0.96700 * 113.99800 * 178.07503 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08995 * 113.77163 * 90.38156 * 21 9 6 37 37 H 1.09005 * 113.83876 * 318.91142 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5151 1.7840 -1.8917 6 16 2.4121 2.1202 1.4286 7 8 1.6869 1.4415 2.4448 8 8 2.3057 3.5186 1.1998 9 7 4.0144 1.8137 1.7137 10 6 5.2758 2.4971 1.3674 11 6 5.8754 1.7874 2.5948 12 8 5.7743 2.5437 3.8031 13 6 7.2580 1.2354 2.3612 14 1 7.7454 1.3849 1.4091 15 6 7.9008 0.5393 3.3629 16 7 7.3074 0.3576 4.5225 17 14 9.6144 -0.1455 3.0730 18 1 10.0809 -0.8462 4.2964 19 1 9.5798 -1.1014 1.9372 20 1 10.5449 0.9673 2.7553 21 6 4.7546 0.7466 2.4195 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0755 29 1 3.5813 0.7123 -2.0801 30 1 3.6191 2.3249 -2.8323 31 1 4.3117 2.0829 -1.2104 32 1 5.2293 3.5816 1.4661 33 1 5.7063 2.1744 0.4195 34 1 6.1233 2.0891 4.5820 35 1 7.7595 -0.1324 5.2271 36 1 5.0305 -0.0927 1.7812 37 1 4.2929 0.4360 3.3568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189057813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:16 Heat of formation + Delta-G solvation = -93.657017 kcal Electronic energy + Delta-G solvation = -21336.900881 eV Core-core repulsion = 18049.406212 eV Total energy + Delta-G solvation = -3287.494669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.42375 -37.01009 -36.80348 -35.35247 -33.86231 -32.16553 -31.91228 -28.70166 -27.72773 -25.27570 -24.59966 -23.67700 -21.99977 -19.57622 -18.29143 -17.51970 -17.31597 -16.63586 -16.19375 -15.23344 -14.77034 -14.30713 -14.14209 -13.87631 -13.66793 -13.44270 -13.17118 -12.92820 -12.77656 -12.20343 -12.04165 -11.75822 -11.68539 -11.65773 -11.60835 -11.57767 -11.44034 -11.08098 -10.94831 -10.81772 -10.66664 -10.52472 -10.24053 -9.33174 -9.02035 -8.73602 -8.55930 -8.02083 -6.33850 -4.44576 1.00828 3.17711 3.23503 3.24398 3.26678 3.93487 4.21049 4.61151 4.79055 4.91107 5.10156 5.16837 5.32080 5.36284 5.39475 5.46528 5.59531 5.67372 5.84557 5.90829 6.00722 6.08821 6.17409 6.24738 6.28186 6.30986 6.40928 6.60731 6.80186 6.93099 7.03788 7.55417 7.68773 7.88628 8.57830 9.25887 9.50613 10.72485 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.005720 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.597408 B = 4894.163592 C = 5074.289665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -1.013 6.013 4 C 0.113 3.887 5 C -0.175 4.175 6 S 2.789 3.211 7 O -0.980 6.980 8 O -0.985 6.985 9 N -1.033 6.033 10 C 0.132 3.868 11 C 0.245 3.755 12 O -0.573 6.573 13 C -0.537 4.537 14 H 0.070 0.930 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.274 1.274 21 C 0.106 3.894 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.075 0.925 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 -1.801 -10.573 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.003 4.003 3 N -0.851 5.851 4 C -0.012 4.012 5 C -0.234 4.234 6 S 2.802 3.198 7 O -0.964 6.964 8 O -0.969 6.969 9 N -0.876 5.876 10 C 0.006 3.994 11 C 0.201 3.799 12 O -0.385 6.385 13 C -0.576 4.576 14 H 0.088 0.912 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.734 3.266 18 H -0.211 1.211 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.019 4.019 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.626 -0.901 -10.287 13.455 hybrid contribution 1.231 -1.209 -0.117 1.729 sum -7.395 -2.110 -10.404 12.937 Atomic orbital electron populations 1.22207 0.96265 1.02146 1.02424 1.21114 0.94234 0.81952 1.02957 1.58334 1.80205 1.23468 1.23085 1.21255 0.97659 0.97034 0.85287 1.22262 0.97829 1.02178 1.01126 1.01696 0.72523 0.73059 0.72557 1.93556 1.70784 1.76109 1.55977 1.93532 1.86510 1.30917 1.85980 1.60534 1.20139 1.38588 1.68370 1.22995 0.79779 0.97526 0.99069 1.19868 0.91091 0.86231 0.82693 1.86047 1.85793 1.47128 1.19523 1.21519 1.00712 1.34972 1.00402 0.91202 1.25081 0.98471 0.94781 0.94778 1.69407 1.38450 1.41514 1.04306 0.86417 0.83362 0.79109 0.77723 1.21067 1.20024 1.19923 1.23813 0.91749 0.91836 0.94510 0.92584 0.91663 0.91965 0.90808 0.90244 0.90734 0.89383 0.92276 0.91701 0.91947 0.91024 0.90092 0.75379 0.91648 0.90634 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 37.16 0.38 -1.55 16 2 C 0.12 1.54 6.07 -4.05 -0.02 1.52 16 3 N -1.01 -14.78 2.84 -114.39 -0.32 -15.11 16 4 C 0.11 1.38 6.40 -4.04 -0.03 1.35 16 5 C -0.18 -1.96 10.24 37.15 0.38 -1.58 16 6 S 2.79 53.78 6.61 -107.50 -0.71 53.07 16 7 O -0.98 -21.22 17.08 -57.17 -0.98 -22.20 16 8 O -0.98 -21.02 16.66 -57.17 -0.95 -21.97 16 9 N -1.03 -21.04 4.18 -118.50 -0.50 -21.54 16 10 C 0.13 2.71 8.10 -2.96 -0.02 2.68 16 11 C 0.25 5.87 1.40 -90.84 -0.13 5.74 16 12 O -0.57 -14.97 13.49 -35.23 -0.48 -15.45 16 13 C -0.54 -13.31 8.61 -34.44 -0.30 -13.60 16 14 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 16 N -0.90 -22.94 11.20 55.43 0.62 -22.32 16 17 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 18 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.11 2.34 8.38 -2.84 -0.02 2.31 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 26 H 0.08 1.07 7.61 -51.93 -0.40 0.68 16 27 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 28 H 0.09 1.15 6.91 -51.93 -0.36 0.80 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.80 6.98 -51.93 -0.36 0.44 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.45 7.23 -51.93 -0.38 1.08 16 34 H 0.39 10.32 6.60 45.56 0.30 10.62 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -29.72 320.48 -8.32 -38.04 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.96 Total: 9.75 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 0.14 Total: -1.44 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.20 Total: -58.97 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -2.40 Total: -59.61 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.71 Total: 53.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.72 -8.32 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189057813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.621 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds