Wall clock time and date at job start Tue Mar 31 2020 01:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47288 * 2 1 4 4 C 1.46505 * 120.00131 * 274.99938 * 3 2 1 5 5 C 1.52991 * 109.47282 * 274.99751 * 4 3 2 6 6 S 1.65599 * 120.00246 * 94.99623 * 3 2 1 7 7 O 1.42096 * 106.40219 * 336.46677 * 6 3 2 8 8 O 1.42095 * 106.40773 * 203.54059 * 6 3 2 9 9 N 1.65606 * 107.21649 * 90.00095 * 6 3 2 10 10 C 1.47586 * 134.48958 * 90.00193 * 9 6 3 11 11 C 1.53949 * 86.11504 * 155.35964 * 10 9 6 12 12 O 1.42903 * 113.74102 * 269.15490 * 11 10 9 13 13 C 1.50694 * 113.74088 * 137.95266 * 11 10 9 14 14 H 1.08000 * 120.00563 * 1.92388 * 13 11 10 15 15 C 1.37885 * 119.99902 * 181.92552 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47807 * 134.45609 * 269.87206 * 9 6 3 22 22 H 1.09000 * 109.47041 * 60.00326 * 1 2 3 23 23 H 1.09003 * 109.47358 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47473 * 300.00162 * 1 2 3 25 25 H 1.08999 * 109.47178 * 240.00284 * 2 1 3 26 26 H 1.09000 * 109.46825 * 120.00182 * 2 1 3 27 27 H 1.08997 * 109.46913 * 35.00106 * 4 3 2 28 28 H 1.09006 * 109.46847 * 154.99657 * 4 3 2 29 29 H 1.09006 * 109.47257 * 60.00157 * 5 4 3 30 30 H 1.09000 * 109.47369 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.47436 * 300.00034 * 5 4 3 32 32 H 1.08993 * 113.76952 * 41.05751 * 10 9 6 33 33 H 1.08995 * 113.86700 * 269.67100 * 10 9 6 34 34 H 0.96700 * 113.99800 * 178.07503 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 36 36 H 1.08995 * 113.77163 * 90.38156 * 21 9 6 37 37 H 1.09005 * 113.83876 * 318.91142 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5151 1.7840 -1.8917 6 16 2.4121 2.1202 1.4286 7 8 1.6869 1.4415 2.4448 8 8 2.3057 3.5186 1.1998 9 7 4.0144 1.8137 1.7137 10 6 5.2758 2.4971 1.3674 11 6 5.8754 1.7874 2.5948 12 8 5.7743 2.5437 3.8031 13 6 7.2580 1.2354 2.3612 14 1 7.7454 1.3849 1.4091 15 6 7.9008 0.5393 3.3629 16 7 7.3074 0.3576 4.5225 17 14 9.6144 -0.1455 3.0730 18 1 10.0809 -0.8462 4.2964 19 1 9.5798 -1.1014 1.9372 20 1 10.5449 0.9673 2.7553 21 6 4.7546 0.7466 2.4195 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.3618 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0755 29 1 3.5813 0.7123 -2.0801 30 1 3.6191 2.3249 -2.8323 31 1 4.3117 2.0829 -1.2104 32 1 5.2293 3.5816 1.4661 33 1 5.7063 2.1744 0.4195 34 1 6.1233 2.0891 4.5820 35 1 7.7595 -0.1324 5.2271 36 1 5.0305 -0.0927 1.7812 37 1 4.2929 0.4360 3.3568 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189057813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:15 Heat of formation + Delta-G solvation = -117.072228 kcal Electronic energy + Delta-G solvation = -21337.916240 eV Core-core repulsion = 18049.406212 eV Total energy + Delta-G solvation = -3288.510029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.17718 -38.42839 -38.08417 -36.99260 -35.74604 -34.09960 -32.84418 -29.74048 -29.50560 -26.97685 -26.39539 -24.62443 -23.08343 -21.35536 -19.73383 -19.30079 -18.74923 -18.26106 -17.54944 -17.03426 -16.21001 -16.01975 -15.57623 -15.08541 -15.04417 -14.80300 -14.64049 -14.33051 -13.96128 -13.78020 -13.39479 -13.32745 -13.27382 -13.23340 -13.02694 -12.82010 -12.72441 -12.63095 -12.53902 -12.23844 -12.15636 -11.92239 -11.68742 -11.10140 -10.61371 -10.32624 -10.19201 -9.75287 -8.20617 -6.38255 -0.50483 1.50138 1.52268 1.59511 1.83052 2.42100 2.47376 2.99812 3.12859 3.65517 3.73045 4.14902 4.25355 4.29381 4.32968 4.44287 4.48133 4.52525 4.61413 4.63725 4.70676 4.81841 4.99037 5.00496 5.02508 5.07962 5.22525 5.29622 5.31112 5.42679 5.74760 5.75157 5.83486 6.01451 6.68447 7.34756 7.48946 8.84924 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.005720 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.597408 B = 4894.163592 C = 5074.289665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.115 3.885 3 N -1.003 6.003 4 C 0.106 3.894 5 C -0.173 4.173 6 S 2.802 3.198 7 O -1.009 7.009 8 O -1.009 7.009 9 N -1.038 6.038 10 C 0.140 3.860 11 C 0.216 3.784 12 O -0.590 6.590 13 C -0.551 4.551 14 H 0.078 0.922 15 C 0.028 3.972 16 N -0.922 5.922 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.266 1.266 20 H -0.273 1.273 21 C 0.116 3.884 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.385 0.615 35 H 0.274 0.726 36 H 0.092 0.908 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -2.788 -13.165 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.844 5.844 4 C -0.018 4.018 5 C -0.232 4.232 6 S 2.814 3.186 7 O -0.994 6.994 8 O -0.993 6.993 9 N -0.879 5.879 10 C 0.015 3.985 11 C 0.173 3.827 12 O -0.402 6.402 13 C -0.590 4.590 14 H 0.096 0.904 15 C -0.172 4.172 16 N -0.562 5.562 17 Si 0.795 3.205 18 H -0.213 1.213 19 H -0.190 1.190 20 H -0.199 1.199 21 C -0.010 4.010 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.584 -1.875 -12.888 15.598 hybrid contribution 1.137 -0.890 0.633 1.576 sum -7.447 -2.765 -12.255 14.605 Atomic orbital electron populations 1.22212 0.95187 1.03527 1.01984 1.21399 0.95172 0.80549 1.03880 1.57993 1.79567 1.24480 1.22350 1.21542 0.99675 0.96197 0.84403 1.22260 0.96243 1.03169 1.01550 1.01068 0.71917 0.72464 0.73134 1.93513 1.71253 1.76491 1.58122 1.93494 1.86633 1.32687 1.86519 1.60418 1.20508 1.38033 1.68979 1.22998 0.79546 0.97047 0.98872 1.20311 0.91881 0.87633 0.82896 1.86034 1.85902 1.47992 1.20237 1.21801 1.01346 1.34966 1.00850 0.90397 1.25819 1.01773 0.95096 0.94549 1.69503 1.39719 1.42052 1.04963 0.85433 0.79095 0.78411 0.77592 1.21311 1.19035 1.19874 1.23581 0.91143 0.92115 0.94179 0.90783 0.89441 0.94608 0.87403 0.91776 0.87247 0.90645 0.91243 0.89414 0.93973 0.91648 0.87114 0.76093 0.91682 0.89000 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 10.24 71.98 0.74 -2.67 16 2 C 0.11 2.58 6.07 86.38 0.52 3.11 16 3 N -1.00 -27.36 2.84 -515.81 -1.47 -28.82 16 4 C 0.11 2.27 6.40 86.38 0.55 2.83 16 5 C -0.17 -3.32 10.24 71.98 0.74 -2.58 16 6 S 2.80 107.68 6.61 -56.49 -0.37 107.30 16 7 O -1.01 -44.42 17.08 -128.00 -2.19 -46.61 16 8 O -1.01 -43.13 16.66 -128.00 -2.13 -45.26 16 9 N -1.04 -42.17 4.18 -532.66 -2.23 -44.40 16 10 C 0.14 5.71 8.10 86.49 0.70 6.41 16 11 C 0.22 10.42 1.40 -10.88 -0.02 10.40 16 12 O -0.59 -31.74 13.49 -148.98 -2.01 -33.75 16 13 C -0.55 -27.06 8.61 25.60 0.22 -26.84 16 14 H 0.08 3.60 7.81 -2.91 -0.02 3.58 16 15 C 0.03 1.37 5.40 84.66 0.46 1.83 16 16 N -0.92 -47.72 11.20 21.45 0.24 -47.48 16 17 Si 0.97 39.17 29.54 68.60 2.03 41.20 16 18 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 C 0.12 5.12 8.38 86.45 0.72 5.85 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 1.74 8.11 -2.39 -0.02 1.72 16 26 H 0.06 1.66 7.61 -2.39 -0.02 1.64 16 27 H 0.11 1.63 8.11 -2.39 -0.02 1.61 16 28 H 0.08 1.83 6.91 -2.38 -0.02 1.82 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 0.98 6.98 -2.39 -0.02 0.96 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.11 3.79 7.23 -2.39 -0.02 3.77 16 34 H 0.39 21.12 6.60 -74.06 -0.49 20.63 16 35 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 36 H 0.09 3.70 8.09 -2.39 -0.02 3.68 16 37 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -64.35 320.48 -2.91 -67.26 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.58 Total: 32.23 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.64 Total: -1.67 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.45 Total: -120.70 kcal Atomic # 8 Polarization: -119.29 SS G_CDS: -6.33 Total: -125.62 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 16 Polarization: 107.68 SS G_CDS: -0.37 Total: 107.30 kcal Total: -64.35 -2.91 -67.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189057813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.809 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds