Wall clock time and date at job start Tue Mar 31 2020 00:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47243 * 2 1 4 4 N 1.46497 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00170 * 274.99765 * 4 3 2 6 6 S 1.65606 * 119.99921 * 94.99931 * 4 3 2 7 7 O 1.42101 * 106.39989 * 156.45951 * 6 4 3 8 8 O 1.42094 * 106.39996 * 23.53921 * 6 4 3 9 9 N 1.65599 * 107.21626 * 269.99887 * 6 4 3 10 10 C 1.47066 * 136.05603 * 90.00540 * 9 6 4 11 11 C 1.53504 * 88.04678 * 207.05069 * 10 9 6 12 12 O 1.42902 * 114.20451 * 87.54970 * 11 10 9 13 13 C 1.50703 * 114.20523 * 220.37340 * 11 10 9 14 14 H 1.08004 * 119.99655 * 0.02562 * 13 11 10 15 15 C 1.37874 * 119.99845 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99837 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47329 * 89.99413 * 17 15 13 19 19 H 1.48498 * 109.46745 * 209.99500 * 17 15 13 20 20 H 1.48496 * 109.46982 * 329.99520 * 17 15 13 21 21 C 1.47064 * 136.05736 * 269.94438 * 9 6 4 22 22 H 1.08993 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47276 * 300.00506 * 1 2 3 24 24 H 1.09002 * 109.46815 * 59.99877 * 1 2 3 25 25 H 1.08998 * 109.47062 * 239.99800 * 2 1 3 26 26 H 1.09002 * 109.46815 * 120.00123 * 2 1 3 27 27 H 1.09002 * 109.46996 * 59.99503 * 3 2 1 28 28 H 1.08998 * 109.46862 * 299.99652 * 3 2 1 29 29 H 1.08994 * 109.47351 * 270.00188 * 5 4 3 30 30 H 1.09005 * 109.46969 * 30.00700 * 5 4 3 31 31 H 1.09003 * 109.47376 * 149.99916 * 5 4 3 32 32 H 1.09002 * 113.46793 * 321.86041 * 10 9 6 33 33 H 1.08999 * 113.46805 * 92.24408 * 10 9 6 34 34 H 0.96697 * 113.99512 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99468 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47096 * 267.69903 * 21 9 6 37 37 H 1.09005 * 113.46966 * 38.08296 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.3320 1.2648 6 16 4.3336 1.5671 -1.4278 7 8 5.6165 2.0853 -1.1035 8 8 3.4524 2.1941 -2.3494 9 7 4.5789 0.0283 -1.9881 10 6 3.8521 -0.9113 -2.8553 11 6 4.5366 -2.0578 -2.0980 12 8 3.8402 -2.4832 -0.9249 13 6 4.9834 -3.1983 -2.9759 14 1 4.8111 -3.1590 -4.0414 15 6 5.6119 -4.2917 -2.4189 16 7 5.8220 -4.3391 -1.1215 17 14 6.1663 -5.7051 -3.5072 18 1 7.5543 -5.4564 -3.9728 19 1 6.1232 -6.9719 -2.7334 20 1 5.2621 -5.8106 -4.6804 21 6 5.6198 -0.9998 -1.8386 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 4.4185 2.3284 1.6677 30 1 3.6476 0.7540 1.9766 31 1 5.1895 0.8314 1.0907 32 1 2.7714 -0.8833 -2.7160 33 1 4.1436 -0.8487 -3.9037 34 1 4.2741 -3.2051 -0.4501 35 1 6.2645 -5.1083 -0.7297 36 1 6.3828 -0.9615 -2.6160 37 1 6.0428 -1.0465 -0.8350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189058772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:23 Heat of formation + Delta-G solvation = -91.430092 kcal Electronic energy + Delta-G solvation = -21509.661786 eV Core-core repulsion = 18222.263683 eV Total energy + Delta-G solvation = -3287.398102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.60559 -36.92777 -36.63305 -35.42393 -33.94419 -32.64743 -32.14848 -27.82504 -27.26514 -25.06768 -24.74341 -24.42747 -21.27683 -19.62570 -18.33645 -17.77260 -17.05666 -16.65248 -16.05656 -15.20687 -14.65002 -14.40097 -14.36897 -14.01726 -13.76366 -13.14413 -13.01590 -12.86320 -12.63078 -12.19489 -12.08525 -11.83685 -11.69925 -11.67526 -11.50500 -11.46073 -11.17124 -11.09333 -11.06588 -10.78547 -10.51367 -10.34140 -10.22046 -9.30912 -8.90070 -8.73745 -8.51174 -8.04303 -6.37391 -4.46648 0.99670 3.15701 3.23683 3.25711 3.30008 3.93202 4.19727 4.60728 4.87643 4.93425 5.18788 5.27751 5.48236 5.51680 5.57203 5.65841 5.80444 5.90845 5.95079 6.03008 6.10676 6.15157 6.21696 6.27250 6.34757 6.49644 6.60679 6.68190 6.76842 6.96147 7.05464 7.53963 7.68853 7.86794 8.56447 9.24023 9.51358 10.68791 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.006382 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.954520 B = 4386.382087 C = 4865.646110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.118 3.882 4 N -1.007 6.007 5 C 0.102 3.898 6 S 2.807 3.193 7 O -0.986 6.986 8 O -0.988 6.988 9 N -1.047 6.047 10 C 0.135 3.865 11 C 0.242 3.758 12 O -0.570 6.570 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.907 3.093 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.106 3.894 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 6.236 4.031 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C -0.007 4.007 4 N -0.845 5.845 5 C -0.044 4.044 6 S 2.818 3.182 7 O -0.970 6.970 8 O -0.973 6.973 9 N -0.890 5.890 10 C 0.009 3.991 11 C 0.199 3.801 12 O -0.382 6.382 13 C -0.572 4.572 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.734 3.266 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C -0.020 4.020 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.706 7.674 3.706 10.256 hybrid contribution 0.723 -1.463 -0.019 1.632 sum -4.983 6.211 3.687 8.775 Atomic orbital electron populations 1.21683 0.95717 1.01873 1.01230 1.22008 0.95525 0.96696 1.04369 1.21413 0.78515 0.97508 1.03279 1.57862 1.14975 1.89261 1.22431 1.21337 0.96349 1.01077 0.85653 1.00993 0.72607 0.72051 0.72547 1.93556 1.40866 1.77807 1.84791 1.93533 1.67502 1.74258 1.61975 1.60084 1.35187 1.31624 1.62060 1.22789 0.96239 0.86103 0.93927 1.19686 0.86861 0.89229 0.84356 1.85992 1.53183 1.58462 1.40607 1.21524 1.38282 1.02712 0.94652 0.91066 1.25062 0.94262 0.98396 0.95323 1.69263 1.42968 1.31319 1.10396 0.86348 0.79099 0.80842 0.80296 1.20364 1.20993 1.19594 1.23604 0.92734 0.85234 1.00397 0.92384 0.93174 0.92834 0.90303 0.91313 0.90811 0.89617 0.93064 0.91194 0.91250 0.91995 0.89995 0.75138 0.91704 0.90575 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.15 -2.11 6.26 -26.73 -0.17 -2.28 16 3 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 4 N -1.01 -16.07 3.24 -121.76 -0.39 -16.46 16 5 C 0.10 1.40 10.31 59.84 0.62 2.02 16 6 S 2.81 54.07 6.65 -107.50 -0.71 53.35 16 7 O -0.99 -21.03 17.21 -57.17 -0.98 -22.02 16 8 O -0.99 -20.48 16.69 -57.17 -0.95 -21.44 16 9 N -1.05 -21.21 4.29 -124.97 -0.54 -21.75 16 10 C 0.13 2.76 8.06 -8.50 -0.07 2.69 16 11 C 0.24 5.56 1.59 -91.19 -0.14 5.41 16 12 O -0.57 -13.42 13.54 -35.23 -0.48 -13.90 16 13 C -0.53 -13.06 8.69 -34.44 -0.30 -13.36 16 14 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 16 N -0.90 -22.36 11.01 55.43 0.61 -21.75 16 17 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 C 0.11 2.31 8.15 -8.44 -0.07 2.24 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.35 6.80 -51.93 -0.35 1.00 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.84 8.11 -51.93 -0.42 0.41 16 28 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 32 H 0.06 1.20 6.90 -51.93 -0.36 0.84 16 33 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 34 H 0.39 9.66 6.33 45.56 0.29 9.95 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -28.17 319.60 -8.49 -36.65 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.95 Total: 9.57 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.12 Total: -1.34 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.32 Total: -59.96 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.42 Total: -57.35 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.71 Total: 53.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.17 -8.49 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189058772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.777 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds