Wall clock time and date at job start Tue Mar 31 2020 00:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47243 * 2 1 4 4 N 1.46497 * 109.46942 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00170 * 274.99765 * 4 3 2 6 6 S 1.65606 * 119.99921 * 94.99931 * 4 3 2 7 7 O 1.42101 * 106.39989 * 156.45951 * 6 4 3 8 8 O 1.42094 * 106.39996 * 23.53921 * 6 4 3 9 9 N 1.65599 * 107.21626 * 269.99887 * 6 4 3 10 10 C 1.47066 * 136.05603 * 90.00540 * 9 6 4 11 11 C 1.53504 * 88.04678 * 207.05069 * 10 9 6 12 12 O 1.42902 * 114.20451 * 87.54970 * 11 10 9 13 13 C 1.50703 * 114.20523 * 220.37340 * 11 10 9 14 14 H 1.08004 * 119.99655 * 0.02562 * 13 11 10 15 15 C 1.37874 * 119.99845 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99837 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47329 * 89.99413 * 17 15 13 19 19 H 1.48498 * 109.46745 * 209.99500 * 17 15 13 20 20 H 1.48496 * 109.46982 * 329.99520 * 17 15 13 21 21 C 1.47064 * 136.05736 * 269.94438 * 9 6 4 22 22 H 1.08993 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47276 * 300.00506 * 1 2 3 24 24 H 1.09002 * 109.46815 * 59.99877 * 1 2 3 25 25 H 1.08998 * 109.47062 * 239.99800 * 2 1 3 26 26 H 1.09002 * 109.46815 * 120.00123 * 2 1 3 27 27 H 1.09002 * 109.46996 * 59.99503 * 3 2 1 28 28 H 1.08998 * 109.46862 * 299.99652 * 3 2 1 29 29 H 1.08994 * 109.47351 * 270.00188 * 5 4 3 30 30 H 1.09005 * 109.46969 * 30.00700 * 5 4 3 31 31 H 1.09003 * 109.47376 * 149.99916 * 5 4 3 32 32 H 1.09002 * 113.46793 * 321.86041 * 10 9 6 33 33 H 1.08999 * 113.46805 * 92.24408 * 10 9 6 34 34 H 0.96697 * 113.99512 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99468 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47096 * 267.69903 * 21 9 6 37 37 H 1.09005 * 113.46966 * 38.08296 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.3320 1.2648 6 16 4.3336 1.5671 -1.4278 7 8 5.6165 2.0853 -1.1035 8 8 3.4524 2.1941 -2.3494 9 7 4.5789 0.0283 -1.9881 10 6 3.8521 -0.9113 -2.8553 11 6 4.5366 -2.0578 -2.0980 12 8 3.8402 -2.4832 -0.9249 13 6 4.9834 -3.1983 -2.9759 14 1 4.8111 -3.1590 -4.0414 15 6 5.6119 -4.2917 -2.4189 16 7 5.8220 -4.3391 -1.1215 17 14 6.1663 -5.7051 -3.5072 18 1 7.5543 -5.4564 -3.9728 19 1 6.1232 -6.9719 -2.7334 20 1 5.2621 -5.8106 -4.6804 21 6 5.6198 -0.9998 -1.8386 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 4.4185 2.3284 1.6677 30 1 3.6476 0.7540 1.9766 31 1 5.1895 0.8314 1.0907 32 1 2.7714 -0.8833 -2.7160 33 1 4.1436 -0.8487 -3.9037 34 1 4.2741 -3.2051 -0.4501 35 1 6.2645 -5.1083 -0.7297 36 1 6.3828 -0.9615 -2.6160 37 1 6.0428 -1.0465 -0.8350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189058772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:23 Heat of formation + Delta-G solvation = -113.086489 kcal Electronic energy + Delta-G solvation = -21510.600877 eV Core-core repulsion = 18222.263683 eV Total energy + Delta-G solvation = -3288.337194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32766 -38.47052 -37.89159 -37.04139 -35.75114 -34.02354 -33.75694 -29.59095 -28.34948 -26.76189 -26.48279 -25.63984 -22.41814 -21.34483 -19.86401 -19.44226 -18.61825 -18.28511 -17.49927 -17.01287 -16.09990 -15.93749 -15.58180 -15.47290 -15.31915 -14.79477 -14.68583 -14.02268 -13.88987 -13.77983 -13.52911 -13.40926 -13.32395 -13.28057 -13.00089 -12.80373 -12.66673 -12.54339 -12.34462 -12.23731 -12.15389 -12.06160 -11.48346 -11.06781 -10.63120 -10.29776 -10.01243 -9.79589 -8.22328 -6.37954 -0.52068 1.47420 1.51121 1.59596 1.82472 2.41952 2.43303 2.97408 3.11211 3.68192 3.79742 4.10857 4.16752 4.30704 4.43778 4.47463 4.52968 4.64098 4.65204 4.70360 4.76557 4.86722 4.92986 4.97123 4.98268 5.03929 5.27039 5.27951 5.39314 5.50383 5.70273 5.74367 5.87626 6.02910 6.68099 7.35199 7.59602 8.82616 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.006382 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.954520 B = 4386.382087 C = 4865.646110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 C 0.115 3.885 4 N -1.003 6.003 5 C 0.094 3.906 6 S 2.817 3.183 7 O -1.008 7.008 8 O -1.003 7.003 9 N -1.048 6.048 10 C 0.138 3.862 11 C 0.228 3.772 12 O -0.571 6.571 13 C -0.553 4.553 14 H 0.072 0.928 15 C 0.032 3.968 16 N -0.916 5.916 17 Si 0.965 3.035 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.109 3.891 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.386 0.614 35 H 0.274 0.726 36 H 0.076 0.924 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 6.557 4.487 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.184 4.184 3 C -0.010 4.010 4 N -0.844 5.844 5 C -0.051 4.051 6 S 2.829 3.171 7 O -0.993 6.993 8 O -0.988 6.988 9 N -0.889 5.889 10 C 0.013 3.987 11 C 0.184 3.816 12 O -0.383 6.383 13 C -0.591 4.591 14 H 0.090 0.910 15 C -0.168 4.168 16 N -0.558 5.558 17 Si 0.791 3.209 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.018 4.018 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.548 8.004 4.150 11.143 hybrid contribution 0.945 -1.529 -0.099 1.800 sum -5.603 6.475 4.052 9.473 Atomic orbital electron populations 1.21654 0.93608 1.02183 1.02605 1.21958 0.97394 0.96536 1.02485 1.21637 0.77015 0.97521 1.04810 1.57676 1.15939 1.88876 1.21908 1.21565 0.95870 1.02697 0.84976 1.00565 0.72116 0.71553 0.72913 1.93522 1.42370 1.78187 1.85197 1.93507 1.67617 1.74489 1.63161 1.60071 1.34667 1.31597 1.62523 1.22771 0.96678 0.85026 0.94274 1.19847 0.87843 0.89598 0.84293 1.85990 1.53286 1.58153 1.40888 1.21800 1.38690 1.03645 0.94995 0.91007 1.25713 0.94342 1.00337 0.96402 1.69336 1.43214 1.31844 1.11359 0.85447 0.78527 0.78202 0.78767 1.20249 1.20895 1.19386 1.23438 0.92750 0.85676 0.99897 0.92655 0.90822 0.92438 0.93554 0.91809 0.87180 0.90084 0.90894 0.88947 0.92812 0.91193 0.88901 0.75933 0.91573 0.90607 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.14 -3.93 6.26 30.60 0.19 -3.74 16 3 C 0.11 2.94 5.66 86.38 0.49 3.43 16 4 N -1.00 -30.45 3.24 -539.14 -1.75 -32.20 16 5 C 0.09 2.41 10.31 127.77 1.32 3.73 16 6 S 2.82 106.81 6.65 -56.49 -0.38 106.43 16 7 O -1.01 -42.64 17.21 -128.00 -2.20 -44.85 16 8 O -1.00 -40.80 16.69 -128.00 -2.14 -42.93 16 9 N -1.05 -42.31 4.29 -549.71 -2.36 -44.67 16 10 C 0.14 5.61 8.06 83.18 0.67 6.28 16 11 C 0.23 10.48 1.59 -11.16 -0.02 10.46 16 12 O -0.57 -27.18 13.54 -148.98 -2.02 -29.19 16 13 C -0.55 -27.08 8.69 25.60 0.22 -26.86 16 14 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 15 C 0.03 1.57 5.40 84.65 0.46 2.03 16 16 N -0.92 -45.66 11.01 21.45 0.24 -45.42 16 17 Si 0.96 39.23 29.54 68.60 2.03 41.25 16 18 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 C 0.11 4.78 8.15 83.22 0.68 5.46 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.56 6.80 -2.39 -0.02 1.55 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 28 H 0.08 2.18 6.92 -2.39 -0.02 2.16 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.95 8.07 -2.38 -0.02 1.93 16 31 H 0.05 1.55 7.79 -2.39 -0.02 1.53 16 32 H 0.07 2.71 6.90 -2.39 -0.02 2.69 16 33 H 0.09 3.53 8.10 -2.39 -0.02 3.51 16 34 H 0.39 19.27 6.33 -74.06 -0.47 18.80 16 35 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 36 H 0.08 3.29 8.10 -2.39 -0.02 3.27 16 37 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -58.79 319.60 -3.26 -62.05 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.60 Total: 31.06 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.72 Total: -1.53 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -3.87 Total: -122.29 kcal Atomic # 8 Polarization: -110.62 SS G_CDS: -6.36 Total: -116.97 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.25 kcal Atomic # 16 Polarization: 106.81 SS G_CDS: -0.38 Total: 106.43 kcal Total: -58.79 -3.26 -62.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189058772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.038 kcal (2) G-P(sol) polarization free energy of solvation -58.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds