Wall clock time and date at job start Tue Mar 31 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46971 * 2 1 4 4 N 1.46497 * 109.47155 * 119.99966 * 2 1 3 5 5 C 1.46496 * 120.00170 * 299.99591 * 4 2 1 6 6 S 1.65606 * 119.99921 * 119.99758 * 4 2 1 7 7 O 1.42101 * 106.39989 * 156.45951 * 6 4 2 8 8 O 1.42094 * 106.39996 * 23.53921 * 6 4 2 9 9 N 1.65599 * 107.21626 * 269.99887 * 6 4 2 10 10 C 1.47066 * 136.05603 * 90.00540 * 9 6 4 11 11 C 1.53504 * 88.04678 * 207.05069 * 10 9 6 12 12 O 1.42902 * 114.20451 * 87.54970 * 11 10 9 13 13 C 1.50703 * 114.20523 * 220.37340 * 11 10 9 14 14 H 1.08004 * 119.99655 * 0.02562 * 13 11 10 15 15 C 1.37874 * 119.99845 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99837 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46984 * 59.99712 * 17 15 13 19 19 H 1.48497 * 109.47149 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46659 * 299.99467 * 17 15 13 21 21 C 1.47064 * 136.05736 * 269.94438 * 9 6 4 22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 299.99720 * 1 2 3 24 24 H 1.08993 * 109.47432 * 59.99746 * 1 2 3 25 25 H 1.08999 * 109.46856 * 239.99798 * 2 1 3 26 26 H 1.09004 * 109.47280 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47030 * 299.99952 * 3 2 1 28 28 H 1.08999 * 109.47496 * 60.00190 * 3 2 1 29 29 H 1.08994 * 109.47351 * 270.00188 * 5 4 2 30 30 H 1.09005 * 109.46969 * 30.00700 * 5 4 2 31 31 H 1.09003 * 109.47376 * 149.99916 * 5 4 2 32 32 H 1.09002 * 113.46793 * 321.86041 * 10 9 6 33 33 H 1.08999 * 113.46805 * 92.24408 * 10 9 6 34 34 H 0.96697 * 113.99512 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99468 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47096 * 267.69903 * 21 9 6 37 37 H 1.09005 * 113.46966 * 38.08296 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6646 -0.1901 2.5267 6 16 2.9704 -2.0371 1.0442 7 8 3.7119 -2.1426 2.2518 8 8 3.5794 -1.9554 -0.2371 9 7 1.9607 -3.3488 0.9993 10 6 1.2609 -4.1112 -0.0457 11 6 0.2080 -4.4861 1.0065 12 8 -0.8551 -3.5398 1.1345 13 6 -0.2677 -5.9137 0.9233 14 1 0.1329 -6.5731 0.1675 15 6 -1.2142 -6.3778 1.8119 16 7 -1.7016 -5.5748 2.7324 17 14 -1.8033 -8.1475 1.7092 18 1 -0.6512 -9.0646 1.9007 19 1 -2.8139 -8.3951 2.7687 20 1 -2.4128 -8.3897 0.3769 21 6 1.3699 -4.2646 1.9867 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.4159 0.5273 2.8567 30 1 0.6905 0.2974 2.4844 31 1 1.6239 -1.0226 3.2292 32 1 0.8689 -3.4875 -0.8491 33 1 1.8294 -4.9651 -0.4143 34 1 -1.5164 -3.7788 1.7983 35 1 -2.3672 -5.9015 3.3578 36 1 1.9669 -5.1599 2.1601 37 1 1.0713 -3.7716 2.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189061316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:25 Heat of formation + Delta-G solvation = -87.851732 kcal Electronic energy + Delta-G solvation = -21519.521058 eV Core-core repulsion = 18232.278125 eV Total energy + Delta-G solvation = -3287.242933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.59407 -37.32119 -36.77973 -35.41461 -33.94722 -32.15198 -31.43841 -27.83530 -27.02647 -26.23413 -25.04857 -24.65407 -20.89999 -19.57829 -18.33217 -17.82595 -17.15051 -16.64136 -15.89641 -15.19366 -14.58547 -14.37612 -14.14153 -14.00128 -13.67212 -13.13270 -12.99785 -12.83365 -12.47793 -12.39087 -12.08019 -11.90486 -11.69739 -11.68304 -11.62408 -11.50168 -11.15470 -11.09220 -11.05246 -10.82090 -10.61452 -10.48623 -10.23392 -9.32660 -8.92693 -8.73457 -8.51023 -8.04822 -6.37196 -4.46588 0.99656 3.17683 3.23419 3.24830 3.30097 3.93580 4.19912 4.60327 4.85199 4.88044 5.18720 5.20993 5.39204 5.48319 5.68043 5.70319 5.76728 5.83644 5.90545 5.99636 6.07027 6.11053 6.17201 6.32629 6.36139 6.42953 6.58930 6.63159 6.74854 6.98532 7.05600 7.53885 7.68836 7.86673 8.56241 9.23983 9.50907 10.69067 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.005908 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.448495 B = 4738.319012 C = 5064.441294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.142 3.858 3 C -0.156 4.156 4 N -1.001 6.001 5 C 0.100 3.900 6 S 2.806 3.194 7 O -0.986 6.986 8 O -0.989 6.989 9 N -1.048 6.048 10 C 0.135 3.865 11 C 0.242 3.758 12 O -0.571 6.571 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.106 3.894 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.393 0.607 35 H 0.273 0.727 36 H 0.076 0.924 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 9.248 -2.106 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 C -0.215 4.215 4 N -0.840 5.840 5 C -0.046 4.046 6 S 2.818 3.182 7 O -0.970 6.970 8 O -0.973 6.973 9 N -0.890 5.890 10 C 0.010 3.990 11 C 0.198 3.802 12 O -0.384 6.384 13 C -0.572 4.572 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.020 4.020 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.638 9.777 -2.431 10.712 hybrid contribution -0.951 -1.096 0.632 1.582 sum 2.687 8.681 -1.799 9.264 Atomic orbital electron populations 1.22184 0.94503 1.04091 1.01546 1.20832 0.95036 0.93500 0.87034 1.22111 1.01388 0.95967 1.02083 1.57967 1.69995 1.44542 1.11493 1.21311 1.00815 1.00077 0.82349 1.01011 0.72659 0.71868 0.72689 1.93554 1.68778 1.86499 1.48171 1.93537 1.74309 1.86758 1.42698 1.60097 1.66358 1.42300 1.20268 1.22764 0.91518 0.93096 0.91650 1.19692 0.83664 0.87606 0.89202 1.85981 1.38260 1.49287 1.64878 1.21483 1.23686 0.95478 1.16560 0.91099 1.25065 0.95217 0.98704 0.94051 1.69253 1.29989 1.36307 1.18453 0.86395 0.78579 0.83575 0.77968 1.19931 1.21078 1.19916 1.23600 0.95197 0.89763 0.93390 0.90365 0.92413 0.92158 0.88780 0.92539 0.91703 0.92271 0.93146 0.91023 0.91288 0.92054 0.89986 0.75099 0.91631 0.90569 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 37.16 0.34 -1.84 16 2 C 0.14 2.00 3.24 -67.93 -0.22 1.78 16 3 C -0.16 -1.78 9.19 37.15 0.34 -1.43 16 4 N -1.00 -15.97 3.13 -114.61 -0.36 -16.33 16 5 C 0.10 1.39 9.35 59.84 0.56 1.95 16 6 S 2.81 54.09 6.64 -107.50 -0.71 53.38 16 7 O -0.99 -21.05 17.21 -57.17 -0.98 -22.03 16 8 O -0.99 -20.51 16.70 -57.17 -0.95 -21.47 16 9 N -1.05 -21.35 4.29 -124.97 -0.54 -21.89 16 10 C 0.14 2.78 8.14 -8.50 -0.07 2.71 16 11 C 0.24 5.59 1.59 -91.19 -0.14 5.44 16 12 O -0.57 -13.58 13.54 -35.23 -0.48 -14.06 16 13 C -0.53 -13.10 8.69 -34.44 -0.30 -13.40 16 14 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 16 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 17 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 21 C 0.11 2.33 8.15 -8.44 -0.07 2.26 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 0.71 6.66 -51.93 -0.35 0.37 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.41 6.91 -51.93 -0.36 1.06 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 34 H 0.39 9.71 6.33 45.56 0.29 10.00 16 35 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -28.30 317.41 -8.21 -36.51 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.90 Total: 9.53 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.34 Total: -0.86 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.28 Total: -60.04 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: -2.42 Total: -57.56 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.71 Total: 53.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.30 -8.21 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189061316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.345 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds