Wall clock time and date at job start Tue Mar 31 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46971 * 2 1 4 4 N 1.46497 * 109.47155 * 119.99966 * 2 1 3 5 5 C 1.46496 * 120.00170 * 299.99591 * 4 2 1 6 6 S 1.65606 * 119.99921 * 119.99758 * 4 2 1 7 7 O 1.42101 * 106.39989 * 156.45951 * 6 4 2 8 8 O 1.42094 * 106.39996 * 23.53921 * 6 4 2 9 9 N 1.65599 * 107.21626 * 269.99887 * 6 4 2 10 10 C 1.47066 * 136.05603 * 90.00540 * 9 6 4 11 11 C 1.53504 * 88.04678 * 207.05069 * 10 9 6 12 12 O 1.42902 * 114.20451 * 87.54970 * 11 10 9 13 13 C 1.50703 * 114.20523 * 220.37340 * 11 10 9 14 14 H 1.08004 * 119.99655 * 0.02562 * 13 11 10 15 15 C 1.37874 * 119.99845 * 180.02562 * 13 11 10 16 16 N 1.31519 * 119.99837 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46984 * 59.99712 * 17 15 13 19 19 H 1.48497 * 109.47149 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46659 * 299.99467 * 17 15 13 21 21 C 1.47064 * 136.05736 * 269.94438 * 9 6 4 22 22 H 1.08998 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 299.99720 * 1 2 3 24 24 H 1.08993 * 109.47432 * 59.99746 * 1 2 3 25 25 H 1.08999 * 109.46856 * 239.99798 * 2 1 3 26 26 H 1.09004 * 109.47280 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47030 * 299.99952 * 3 2 1 28 28 H 1.08999 * 109.47496 * 60.00190 * 3 2 1 29 29 H 1.08994 * 109.47351 * 270.00188 * 5 4 2 30 30 H 1.09005 * 109.46969 * 30.00700 * 5 4 2 31 31 H 1.09003 * 109.47376 * 149.99916 * 5 4 2 32 32 H 1.09002 * 113.46793 * 321.86041 * 10 9 6 33 33 H 1.08999 * 113.46805 * 92.24408 * 10 9 6 34 34 H 0.96697 * 113.99512 * 180.02562 * 12 11 10 35 35 H 0.97004 * 119.99468 * 180.02562 * 16 15 13 36 36 H 1.08999 * 113.47096 * 267.69903 * 21 9 6 37 37 H 1.09005 * 113.46966 * 38.08296 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6646 -0.1901 2.5267 6 16 2.9704 -2.0371 1.0442 7 8 3.7119 -2.1426 2.2518 8 8 3.5794 -1.9554 -0.2371 9 7 1.9607 -3.3488 0.9993 10 6 1.2609 -4.1112 -0.0457 11 6 0.2080 -4.4861 1.0065 12 8 -0.8551 -3.5398 1.1345 13 6 -0.2677 -5.9137 0.9233 14 1 0.1329 -6.5731 0.1675 15 6 -1.2142 -6.3778 1.8119 16 7 -1.7016 -5.5748 2.7324 17 14 -1.8033 -8.1475 1.7092 18 1 -0.6512 -9.0646 1.9007 19 1 -2.8139 -8.3951 2.7687 20 1 -2.4128 -8.3897 0.3769 21 6 1.3699 -4.2646 1.9867 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.4159 0.5273 2.8567 30 1 0.6905 0.2974 2.4844 31 1 1.6239 -1.0226 3.2292 32 1 0.8689 -3.4875 -0.8491 33 1 1.8294 -4.9651 -0.4143 34 1 -1.5164 -3.7788 1.7983 35 1 -2.3672 -5.9015 3.3578 36 1 1.9669 -5.1599 2.1601 37 1 1.0713 -3.7716 2.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189061316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:25 Heat of formation + Delta-G solvation = -109.837600 kcal Electronic energy + Delta-G solvation = -21520.474437 eV Core-core repulsion = 18232.278125 eV Total energy + Delta-G solvation = -3288.196312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32621 -38.57583 -38.30110 -37.03867 -35.76278 -34.03047 -32.56426 -29.60118 -28.00418 -27.41499 -26.74813 -26.44186 -22.14200 -21.26328 -19.80765 -19.46083 -18.73988 -18.29625 -17.37791 -16.98427 -16.07553 -15.91485 -15.57656 -15.33044 -15.09470 -14.78245 -14.68773 -13.92558 -13.82195 -13.70559 -13.56329 -13.41025 -13.33207 -13.28335 -13.12580 -12.79158 -12.77299 -12.55316 -12.34474 -12.22461 -12.15104 -12.09189 -11.71839 -11.08748 -10.63308 -10.31624 -10.02722 -9.80687 -8.22245 -6.38083 -0.52553 1.49891 1.51585 1.58590 1.82810 2.41960 2.43534 2.97281 3.10791 3.66293 3.74761 4.09435 4.18584 4.30340 4.34469 4.44617 4.62198 4.64898 4.66025 4.72095 4.79868 4.82913 4.87531 4.97299 5.00573 5.01972 5.17082 5.27691 5.39414 5.49199 5.73056 5.73938 5.86773 6.02308 6.67802 7.35003 7.58493 8.82732 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.005908 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.448495 B = 4738.319012 C = 5064.441294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 C -0.151 4.151 4 N -0.997 5.997 5 C 0.093 3.907 6 S 2.816 3.184 7 O -1.008 7.008 8 O -1.004 7.004 9 N -1.049 6.049 10 C 0.138 3.862 11 C 0.226 3.774 12 O -0.573 6.573 13 C -0.553 4.553 14 H 0.072 0.928 15 C 0.032 3.968 16 N -0.917 5.917 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.109 3.891 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.386 0.614 35 H 0.275 0.725 36 H 0.076 0.924 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 10.124 -2.500 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.839 5.839 5 C -0.052 4.052 6 S 2.828 3.172 7 O -0.993 6.993 8 O -0.988 6.988 9 N -0.890 5.890 10 C 0.012 3.988 11 C 0.183 3.817 12 O -0.386 6.386 13 C -0.592 4.592 14 H 0.091 0.909 15 C -0.168 4.168 16 N -0.558 5.558 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.017 4.017 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.378 10.652 -2.837 11.529 hybrid contribution -0.875 -1.289 0.744 1.726 sum 2.503 9.363 -2.093 9.915 Atomic orbital electron populations 1.22116 0.93767 1.02419 1.03286 1.21084 0.95601 0.94885 0.85625 1.22088 1.01036 0.93964 1.03945 1.57789 1.69713 1.43270 1.13098 1.21521 1.02735 1.00014 0.80908 1.00579 0.72704 0.72056 0.71833 1.93519 1.69818 1.86963 1.48973 1.93510 1.74991 1.87036 1.43310 1.60100 1.66395 1.42943 1.19562 1.22758 0.90829 0.93766 0.91421 1.19871 0.83887 0.87201 0.90758 1.85977 1.38413 1.49526 1.64649 1.21764 1.24213 0.96342 1.16844 0.90935 1.25727 0.95341 1.01967 0.93784 1.69329 1.30212 1.37519 1.18781 0.85482 0.77987 0.79580 0.77791 1.19717 1.20963 1.19742 1.23436 0.95079 0.90107 0.93114 0.93636 0.91303 0.89815 0.90089 0.93102 0.89444 0.90845 0.91119 0.88862 0.92779 0.91204 0.88803 0.75846 0.91533 0.90596 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.17 71.98 0.66 -3.20 16 2 C 0.13 3.51 3.24 44.99 0.15 3.66 16 3 C -0.15 -2.99 9.19 71.98 0.66 -2.33 16 4 N -1.00 -30.63 3.13 -516.53 -1.62 -32.25 16 5 C 0.09 2.44 9.35 127.77 1.19 3.63 16 6 S 2.82 107.54 6.64 -56.49 -0.37 107.17 16 7 O -1.01 -42.89 17.21 -128.00 -2.20 -45.09 16 8 O -1.00 -41.18 16.70 -128.00 -2.14 -43.32 16 9 N -1.05 -42.68 4.29 -549.71 -2.36 -45.04 16 10 C 0.14 5.63 8.14 83.18 0.68 6.30 16 11 C 0.23 10.48 1.59 -11.16 -0.02 10.46 16 12 O -0.57 -27.51 13.54 -148.98 -2.02 -29.53 16 13 C -0.55 -27.11 8.69 25.60 0.22 -26.89 16 14 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 15 C 0.03 1.56 5.40 84.65 0.46 2.02 16 16 N -0.92 -45.80 11.01 21.45 0.24 -45.56 16 17 Si 0.97 39.15 29.54 68.60 2.03 41.18 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 C 0.11 4.82 8.15 83.22 0.68 5.49 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.52 6.66 -2.39 -0.02 1.50 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.08 2.35 6.91 -2.39 -0.02 2.33 16 26 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 2.02 6.43 -2.38 -0.02 2.01 16 31 H 0.05 1.58 7.79 -2.39 -0.02 1.56 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16 33 H 0.09 3.57 8.10 -2.39 -0.02 3.55 16 34 H 0.39 19.38 6.33 -74.06 -0.47 18.91 16 35 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 36 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 37 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -59.11 317.41 -3.17 -62.28 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.60 Total: 31.02 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 4.68 Total: -0.86 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -3.74 Total: -122.85 kcal Atomic # 8 Polarization: -111.58 SS G_CDS: -6.36 Total: -117.94 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 107.54 SS G_CDS: -0.37 Total: 107.17 kcal Total: -59.11 -3.17 -62.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189061316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.557 kcal (2) G-P(sol) polarization free energy of solvation -59.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds