Wall clock time and date at job start Mon Mar 30 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 C 1.50699 * 109.47280 * 119.99952 * 2 1 3 5 5 C 1.38400 * 119.84826 * 306.50377 * 4 2 1 6 6 C 1.37909 * 120.15330 * 179.76251 * 5 4 2 7 7 C 1.39680 * 119.84312 * 0.51229 * 6 5 4 8 8 C 1.47701 * 120.15040 * 179.76836 * 7 6 5 9 9 O 1.21473 * 120.00202 * 179.97438 * 8 7 6 10 10 N 1.34784 * 120.00034 * 359.97426 * 8 7 6 11 11 C 1.33323 * 119.99882 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00569 * 0.02562 * 11 10 8 13 13 C 1.46789 * 119.99962 * 180.02562 * 11 10 8 14 14 N 1.29315 * 119.99816 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00241 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47209 * 59.99953 * 15 13 11 17 17 H 1.48497 * 109.47224 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46962 * 299.99959 * 15 13 11 19 19 C 1.39640 * 119.69989 * 359.74027 * 7 6 5 20 20 C 1.37949 * 119.84403 * 0.02562 * 19 7 6 21 21 N 1.48015 * 119.92641 * 180.02562 * 20 19 7 22 22 O 1.31705 * 119.99692 * 39.98041 * 21 20 19 23 23 O 1.31705 * 120.00336 * 219.97521 * 21 20 19 24 24 H 1.08997 * 109.47338 * 59.99755 * 1 2 3 25 25 H 1.09003 * 109.46780 * 300.00064 * 1 2 3 26 26 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47044 * 240.00397 * 2 1 3 28 28 H 1.08999 * 109.47290 * 59.99702 * 3 2 1 29 29 H 1.08997 * 109.47874 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46911 * 300.00447 * 3 2 1 31 31 H 1.08001 * 119.92056 * 0.02562 * 5 4 2 32 32 H 1.08006 * 120.07255 * 180.23344 * 6 5 4 33 33 H 0.96996 * 119.99637 * 0.02562 * 10 8 7 34 34 H 0.97001 * 120.00284 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.08020 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.5887 -0.3185 2.4815 6 6 2.0406 -0.9674 3.6114 7 6 2.9563 -2.0154 3.4917 8 6 3.4486 -2.7117 4.6976 9 8 4.2446 -3.6230 4.5904 10 7 3.0147 -2.3359 5.9171 11 6 3.4595 -2.9641 7.0057 12 1 4.1679 -3.7739 6.9105 13 6 2.9866 -2.5553 8.3338 14 7 2.1389 -1.5854 8.4480 15 14 3.6103 -3.4349 9.8591 16 1 5.0860 -3.2922 9.9442 17 1 2.9852 -2.8367 11.0660 18 1 3.2560 -4.8749 9.7797 19 6 3.4037 -2.4021 2.2267 20 6 2.9397 -1.7475 1.1046 21 7 3.4123 -2.1563 -0.2372 22 8 3.5686 -3.4332 -0.5194 23 8 3.6764 -1.2432 -1.1489 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 0.8838 0.4946 2.5727 32 1 1.6906 -0.6629 4.5867 33 1 2.3789 -1.6084 6.0027 34 1 1.8266 -1.3150 9.3256 35 1 4.1113 -3.2119 2.1270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189526097.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:31 Heat of formation + Delta-G solvation = -9.361046 kcal Electronic energy + Delta-G solvation = -21079.073279 eV Core-core repulsion = 17659.790007 eV Total energy + Delta-G solvation = -3419.283273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86026 -40.34429 -39.20409 -36.69602 -36.19823 -35.53625 -34.01818 -32.94514 -31.44253 -28.02042 -27.98073 -27.11121 -25.02033 -23.68540 -22.02444 -21.29952 -20.57066 -19.52556 -19.35574 -17.93004 -17.64659 -17.07218 -16.62938 -16.25995 -15.77400 -15.67724 -15.43914 -14.98341 -14.85840 -14.65295 -13.96923 -13.83740 -13.53713 -13.16648 -13.03514 -12.93642 -12.79589 -12.53844 -12.46521 -12.15410 -12.14646 -12.11107 -12.09597 -11.70111 -11.34394 -10.71034 -10.60680 -10.46052 -10.18821 -8.83230 -5.88060 -1.80131 -0.51563 -0.16531 -0.10818 1.32104 1.40783 1.48152 1.72696 2.19537 2.41767 2.79692 3.09340 3.14011 3.31079 3.67955 3.72122 3.77687 3.98879 4.03654 4.16787 4.22873 4.53423 4.58066 4.62983 4.82631 4.85694 4.91392 4.97438 4.98978 5.03659 5.16955 5.30991 5.36920 5.38397 5.46753 5.73062 6.30946 6.94220 7.29911 8.00167 8.30610 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026688 B = 0.004207 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.894875 B = 6653.945924 C = 7463.897785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.134 4.134 4 C -0.010 4.010 5 C -0.088 4.088 6 C -0.046 4.046 7 C -0.099 4.099 8 C 0.416 3.584 9 O -0.653 6.653 10 N -0.502 5.502 11 C -0.382 4.382 12 H 0.085 0.915 13 C 0.017 3.983 14 N -0.852 5.852 15 Si 0.999 3.001 16 H -0.269 1.269 17 H -0.257 1.257 18 H -0.269 1.269 19 C -0.036 4.036 20 C -0.013 4.013 21 N -0.018 5.018 22 O -0.227 6.227 23 O -0.121 6.121 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.199 0.801 32 H 0.163 0.837 33 H 0.399 0.601 34 H 0.300 0.700 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 10.957 -8.699 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.012 4.012 5 C -0.106 4.106 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.208 3.792 9 O -0.546 6.546 10 N -0.131 5.131 11 C -0.512 4.512 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.484 5.484 15 Si 0.820 3.180 16 H -0.194 1.194 17 H -0.180 1.180 18 H -0.194 1.194 19 C -0.058 4.058 20 C -0.097 4.097 21 N 0.464 4.536 22 O -0.408 6.408 23 O -0.331 6.331 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.216 0.784 32 H 0.180 0.820 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.761 10.531 -7.877 15.270 hybrid contribution 0.666 -0.886 0.268 1.140 sum -7.095 9.645 -7.609 14.187 Atomic orbital electron populations 1.21930 0.91405 1.02168 1.04580 1.20692 0.98295 0.98136 0.92862 1.21793 1.01043 0.92170 1.04138 1.20268 0.91734 0.90162 0.99041 1.21388 1.00495 1.00890 0.87849 1.22032 0.91605 0.91198 1.01706 1.19875 0.99786 0.98724 0.91980 1.17845 0.88931 0.88845 0.83588 1.90539 1.41680 1.35976 1.86382 1.40753 1.37261 1.30369 1.04728 1.20637 1.27765 1.18318 0.84464 0.89713 1.27670 0.94651 0.95933 1.01361 1.68602 1.26134 1.24688 1.29005 0.84923 0.79001 0.78610 0.75466 1.19395 1.18025 1.19404 1.20679 0.98003 0.97154 0.89915 1.20123 1.06972 1.04052 0.78599 1.50598 0.96505 1.02381 1.04109 1.96319 1.61369 0.95171 1.87939 1.96134 1.50796 1.43511 1.42703 0.89883 0.89728 0.93764 0.90365 0.90253 0.93366 0.89885 0.78418 0.81998 0.76485 0.88757 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.93 71.98 0.64 -1.33 16 2 C -0.08 -1.54 2.62 -11.54 -0.03 -1.57 16 3 C -0.13 -1.95 9.07 71.98 0.65 -1.30 16 4 C -0.01 -0.23 4.79 -19.79 -0.09 -0.33 16 5 C -0.09 -1.78 8.75 22.23 0.19 -1.58 16 6 C -0.05 -1.25 9.54 22.54 0.22 -1.03 16 7 C -0.10 -3.78 5.87 -20.09 -0.12 -3.90 16 8 C 0.42 20.57 7.70 86.74 0.67 21.24 16 9 O -0.65 -38.51 15.86 -3.63 -0.06 -38.56 16 10 N -0.50 -24.46 5.12 -305.79 -1.57 -26.02 16 11 C -0.38 -20.36 9.92 86.70 0.86 -19.50 16 12 H 0.08 4.97 7.19 -2.91 -0.02 4.95 16 13 C 0.02 0.78 5.69 87.30 0.50 1.28 16 14 N -0.85 -38.84 13.09 23.26 0.30 -38.54 16 15 Si 1.00 37.62 29.64 68.60 2.03 39.66 16 16 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 17 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 18 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 19 C -0.04 -1.39 9.26 22.54 0.21 -1.18 16 20 C -0.01 -0.42 6.49 36.34 0.24 -0.18 16 21 N -0.02 -0.62 4.59 -46.55 -0.21 -0.83 16 22 O -0.23 -9.03 19.75 3.51 0.07 -8.96 16 23 O -0.12 -3.91 17.03 3.51 0.06 -3.85 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.80 7.04 -2.39 -0.02 0.79 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.82 5.10 -2.39 -0.01 1.81 16 28 H 0.08 0.84 7.79 -2.39 -0.02 0.82 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.20 2.06 7.08 -2.91 -0.02 2.04 16 32 H 0.16 3.88 6.41 -2.91 -0.02 3.86 16 33 H 0.40 17.17 6.01 -92.71 -0.56 16.61 16 34 H 0.30 12.35 8.26 -92.71 -0.77 11.58 16 35 H 0.13 5.52 7.65 -2.91 -0.02 5.50 16 Total: -1.00 -67.46 310.16 5.15 -62.31 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.59 Total: 24.17 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 3.93 Total: -9.37 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -1.48 Total: -65.40 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: 0.07 Total: -51.37 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.66 kcal Total: -67.46 5.15 -62.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189526097.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.946 kcal (2) G-P(sol) polarization free energy of solvation -67.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds