Wall clock time and date at job start Tue Mar 31 2020 01:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47071 * 2 1 4 4 N 1.46501 * 109.47061 * 239.99954 * 2 1 3 5 5 C 1.34780 * 119.99519 * 84.99947 * 4 2 1 6 6 O 1.21590 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.47535 * 119.99856 * 179.97438 * 5 4 2 8 8 C 1.39676 * 120.19576 * 359.97438 * 7 5 4 9 9 C 1.37826 * 119.91837 * 179.97438 * 8 7 5 10 10 C 1.38580 * 120.32412 * 0.02562 * 9 8 7 11 11 C 1.38026 * 120.40073 * 359.97438 * 10 9 8 12 12 C 1.38831 * 120.07217 * 359.97438 * 11 10 9 13 13 O 1.35518 * 120.16256 * 179.97438 * 12 11 10 14 14 C 1.34821 * 116.99761 * 354.39613 * 13 12 11 15 15 H 1.07997 * 119.99966 * 5.06522 * 14 13 12 16 16 C 1.38696 * 119.99698 * 185.06217 * 14 13 12 17 17 N 1.31517 * 120.00354 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99696 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46886 * 90.00171 * 18 16 14 20 20 H 1.48496 * 109.46882 * 209.99904 * 18 16 14 21 21 H 1.48493 * 109.47138 * 330.00220 * 18 16 14 22 22 C 1.50701 * 109.47213 * 120.00522 * 2 1 3 23 23 N 1.34775 * 119.99673 * 300.00178 * 22 2 1 24 24 O 1.21272 * 120.00354 * 119.99496 * 22 2 1 25 25 H 1.08994 * 109.46949 * 59.99845 * 1 2 3 26 26 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46753 * 299.99485 * 1 2 3 28 28 H 0.96994 * 120.00665 * 265.00030 * 4 2 1 29 29 H 1.07997 * 120.03682 * 359.97438 * 8 7 5 30 30 H 1.07992 * 119.84015 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.79696 * 180.27730 * 10 9 8 32 32 H 1.07998 * 119.96115 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99836 * 179.97438 * 17 16 14 34 34 H 0.96999 * 120.00374 * 359.97438 * 23 22 2 35 35 H 0.97006 * 120.00480 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1617 -2.4115 7 6 2.6393 -0.7135 -3.5617 8 6 2.9737 -2.0683 -3.5034 9 6 3.4326 -2.7123 -4.6322 10 6 3.5648 -2.0220 -5.8266 11 6 3.2381 -0.6829 -5.8992 12 6 2.7734 -0.0182 -4.7725 13 8 2.4526 1.2967 -4.8416 14 6 2.7164 1.9309 -6.0017 15 1 3.0873 1.3739 -6.8494 16 6 2.5115 3.2986 -6.1065 17 7 2.0603 3.9770 -5.0741 18 14 2.8763 4.1772 -7.7142 19 1 1.6584 4.1806 -8.5638 20 1 3.2867 5.5761 -7.4317 21 1 3.9738 3.4733 -8.4250 22 6 2.0324 -0.7105 1.2304 23 7 1.7068 -0.2501 2.4545 24 8 2.7296 -1.6966 1.1191 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 2.2491 -1.6317 -1.1527 29 1 2.8729 -2.6106 -2.5748 30 1 3.6904 -3.7600 -4.5858 31 1 3.9209 -2.5362 -6.7070 32 1 3.3443 -0.1518 -6.8335 33 1 1.9174 4.9336 -5.1473 34 1 1.1494 0.5387 2.5436 35 1 2.0304 -0.7072 3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194079863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:00 Heat of formation + Delta-G solvation = -71.978462 kcal Electronic energy + Delta-G solvation = -21328.456948 eV Core-core repulsion = 17906.458380 eV Total energy + Delta-G solvation = -3421.998567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.14575 -39.26628 -37.87633 -36.31082 -34.53094 -33.82893 -32.32606 -31.19292 -29.36553 -28.87175 -25.40878 -24.75960 -22.95474 -21.48937 -20.41236 -19.81144 -18.32250 -17.94696 -17.36385 -16.55671 -15.85453 -15.53356 -15.01514 -14.63784 -14.35748 -14.16158 -14.12805 -13.72637 -13.57800 -13.34925 -12.79815 -12.49243 -12.41140 -12.19705 -11.70343 -11.55907 -11.28627 -11.09899 -10.88281 -10.75261 -10.45051 -10.01243 -9.88952 -9.56387 -8.88550 -8.86487 -8.65187 -8.24187 -7.28606 -6.43566 -4.03158 1.73927 2.35661 2.47819 3.12558 3.13722 3.15771 3.18299 3.72681 3.81043 3.94635 4.65104 4.69336 5.07823 5.13598 5.19897 5.24723 5.44689 5.54613 5.63492 5.75010 5.87549 6.10752 6.15936 6.21740 6.56181 6.60435 6.71434 6.82549 6.94634 7.10170 7.14596 7.26391 7.31752 7.72549 7.93367 8.04833 8.14202 8.96405 9.06716 9.69079 10.70461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.005252 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.676126 B = 5330.425581 C = 6624.485710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.115 0.885 4 N -0.728 5.728 5 C 0.559 3.441 6 O -0.502 6.502 7 C -0.227 4.227 8 C -0.036 4.036 9 C -0.230 4.230 10 C -0.050 4.050 11 C -0.239 4.239 12 C 0.191 3.809 13 O -0.125 6.125 14 C -0.403 4.403 15 H 0.094 0.906 16 C 0.045 3.955 17 N -0.834 5.834 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.266 1.266 22 C 0.518 3.482 23 N -0.852 5.852 24 O -0.540 6.540 25 H 0.080 0.920 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.402 0.598 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.271 0.729 34 H 0.404 0.596 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 -7.896 9.274 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.019 3.981 3 H 0.133 0.867 4 N -0.386 5.386 5 C 0.349 3.651 6 O -0.376 6.376 7 C -0.232 4.232 8 C -0.055 4.055 9 C -0.249 4.249 10 C -0.069 4.069 11 C -0.258 4.258 12 C 0.131 3.869 13 O -0.023 6.023 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.466 5.466 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C 0.302 3.698 23 N -0.416 5.416 24 O -0.416 6.416 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.828 -7.164 9.176 11.784 hybrid contribution 0.203 0.087 -0.368 0.429 sum -1.625 -7.078 8.808 11.416 Atomic orbital electron populations 1.22153 0.93216 1.02747 1.03636 1.20596 0.95445 0.98393 0.83679 0.86748 1.45696 1.70303 1.14378 1.08199 1.18234 0.77829 0.86677 0.82366 1.90938 1.47968 1.14584 1.84119 1.18771 1.17658 0.94477 0.92247 1.20831 0.94776 0.92264 0.97609 1.20480 1.11155 0.99564 0.93672 1.20909 0.95380 0.93647 0.96915 1.21149 1.09823 0.95435 0.99362 1.19260 0.90108 0.85824 0.91693 1.84169 1.66391 1.15522 1.36223 1.21496 1.46205 0.91311 0.88893 0.88891 1.25368 0.96272 0.95506 0.99127 1.70124 1.38831 1.08346 1.29287 0.85732 0.79036 0.78790 0.79982 1.19770 1.20163 1.19070 1.20830 0.79241 0.84206 0.85518 1.43781 1.56076 1.33972 1.07788 1.90726 1.37665 1.26442 1.86776 0.90123 0.92077 0.91612 0.76100 0.86808 0.87206 0.87161 0.85056 0.91927 0.76749 0.76742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.38 37.16 0.35 -1.56 16 2 C 0.13 1.83 2.98 -69.08 -0.21 1.62 16 3 H 0.11 1.75 7.57 -51.93 -0.39 1.36 16 4 N -0.73 -12.59 4.90 -55.97 -0.27 -12.86 16 5 C 0.56 12.40 7.73 -12.47 -0.10 12.31 16 6 O -0.50 -13.37 14.83 -16.57 -0.25 -13.61 16 7 C -0.23 -5.05 5.89 -104.81 -0.62 -5.67 16 8 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 9 C -0.23 -3.93 10.03 -39.61 -0.40 -4.33 16 10 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 11 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 12 C 0.19 4.78 6.66 -38.60 -0.26 4.52 16 13 O -0.12 -3.68 7.84 -21.07 -0.17 -3.84 16 14 C -0.40 -11.40 9.49 30.90 0.29 -11.11 16 15 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 16 C 0.04 1.24 5.49 -17.52 -0.10 1.15 16 17 N -0.83 -24.96 13.67 55.48 0.76 -24.20 16 18 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.52 6.58 7.49 -10.99 -0.08 6.50 16 23 N -0.85 -6.70 8.77 31.22 0.27 -6.42 16 24 O -0.54 -8.75 16.67 5.56 0.09 -8.66 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 28 H 0.40 6.40 5.82 -40.82 -0.24 6.16 16 29 H 0.11 1.72 6.40 -52.49 -0.34 1.39 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.40 2.10 8.25 -40.82 -0.34 1.76 16 35 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -36.24 307.51 -5.65 -41.88 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -3.46 Total: 12.08 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.24 Total: -4.44 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.76 Total: -43.49 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.32 Total: -26.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.24 -5.65 -41.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194079863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.095 kcal (2) G-P(sol) polarization free energy of solvation -36.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds