Wall clock time and date at job start Tue Mar 31 2020 01:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47071 * 2 1 4 4 N 1.46501 * 109.47061 * 239.99954 * 2 1 3 5 5 C 1.34780 * 119.99519 * 84.99947 * 4 2 1 6 6 O 1.21590 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.47535 * 119.99856 * 179.97438 * 5 4 2 8 8 C 1.39676 * 120.19576 * 359.97438 * 7 5 4 9 9 C 1.37826 * 119.91837 * 179.97438 * 8 7 5 10 10 C 1.38580 * 120.32412 * 0.02562 * 9 8 7 11 11 C 1.38026 * 120.40073 * 359.97438 * 10 9 8 12 12 C 1.38831 * 120.07217 * 359.97438 * 11 10 9 13 13 O 1.35518 * 120.16256 * 179.97438 * 12 11 10 14 14 C 1.34821 * 116.99761 * 354.39613 * 13 12 11 15 15 H 1.07997 * 119.99966 * 5.06522 * 14 13 12 16 16 C 1.38696 * 119.99698 * 185.06217 * 14 13 12 17 17 N 1.31517 * 120.00354 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99696 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46886 * 90.00171 * 18 16 14 20 20 H 1.48496 * 109.46882 * 209.99904 * 18 16 14 21 21 H 1.48493 * 109.47138 * 330.00220 * 18 16 14 22 22 C 1.50701 * 109.47213 * 120.00522 * 2 1 3 23 23 N 1.34775 * 119.99673 * 300.00178 * 22 2 1 24 24 O 1.21272 * 120.00354 * 119.99496 * 22 2 1 25 25 H 1.08994 * 109.46949 * 59.99845 * 1 2 3 26 26 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46753 * 299.99485 * 1 2 3 28 28 H 0.96994 * 120.00665 * 265.00030 * 4 2 1 29 29 H 1.07997 * 120.03682 * 359.97438 * 8 7 5 30 30 H 1.07992 * 119.84015 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.79696 * 180.27730 * 10 9 8 32 32 H 1.07998 * 119.96115 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99836 * 179.97438 * 17 16 14 34 34 H 0.96999 * 120.00374 * 359.97438 * 23 22 2 35 35 H 0.97006 * 120.00480 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1617 -2.4115 7 6 2.6393 -0.7135 -3.5617 8 6 2.9737 -2.0683 -3.5034 9 6 3.4326 -2.7123 -4.6322 10 6 3.5648 -2.0220 -5.8266 11 6 3.2381 -0.6829 -5.8992 12 6 2.7734 -0.0182 -4.7725 13 8 2.4526 1.2967 -4.8416 14 6 2.7164 1.9309 -6.0017 15 1 3.0873 1.3739 -6.8494 16 6 2.5115 3.2986 -6.1065 17 7 2.0603 3.9770 -5.0741 18 14 2.8763 4.1772 -7.7142 19 1 1.6584 4.1806 -8.5638 20 1 3.2867 5.5761 -7.4317 21 1 3.9738 3.4733 -8.4250 22 6 2.0324 -0.7105 1.2304 23 7 1.7068 -0.2501 2.4545 24 8 2.7296 -1.6966 1.1191 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 2.2491 -1.6317 -1.1527 29 1 2.8729 -2.6106 -2.5748 30 1 3.6904 -3.7600 -4.5858 31 1 3.9209 -2.5362 -6.7070 32 1 3.3443 -0.1518 -6.8335 33 1 1.9174 4.9336 -5.1473 34 1 1.1494 0.5387 2.5436 35 1 2.0304 -0.7072 3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194079863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:59 Heat of formation + Delta-G solvation = -101.632752 kcal Electronic energy + Delta-G solvation = -21329.742854 eV Core-core repulsion = 17906.458380 eV Total energy + Delta-G solvation = -3423.284474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54824 -40.74538 -39.53249 -38.03001 -35.94434 -34.85337 -34.30885 -32.67907 -30.75218 -30.54655 -27.37294 -25.97525 -24.46904 -23.14340 -21.70549 -21.27160 -19.85252 -19.62707 -18.57146 -18.09012 -17.16432 -16.92404 -16.36055 -16.30173 -15.90946 -15.81915 -15.72245 -15.29819 -15.11378 -14.72173 -14.40929 -14.20161 -13.67847 -13.53920 -13.36603 -12.99059 -12.72431 -12.63980 -12.51514 -12.33493 -12.11404 -11.43067 -11.14496 -10.81822 -10.74855 -10.66292 -10.19680 -9.81504 -9.04224 -8.43351 -6.13925 0.10820 0.72176 1.34260 1.43999 1.45414 1.52998 1.94898 2.08574 2.17266 2.60639 2.88394 3.22223 3.45875 3.76583 3.93474 4.05092 4.07451 4.11980 4.29066 4.52361 4.57253 4.65449 4.78391 4.97966 5.08146 5.13686 5.16900 5.42242 5.48330 5.60088 5.69079 5.82308 5.97469 6.15824 6.30558 6.60214 6.96083 7.20023 7.41178 7.80492 8.77057 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.005252 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.676126 B = 5330.425581 C = 6624.485710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.119 3.881 3 H 0.099 0.901 4 N -0.711 5.711 5 C 0.555 3.445 6 O -0.559 6.559 7 C -0.246 4.246 8 C -0.032 4.032 9 C -0.202 4.202 10 C -0.038 4.038 11 C -0.256 4.256 12 C 0.152 3.848 13 O -0.186 6.186 14 C -0.429 4.429 15 H 0.107 0.893 16 C -0.020 4.020 17 N -0.903 5.903 18 Si 1.021 2.979 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.249 1.249 22 C 0.526 3.474 23 N -0.823 5.823 24 O -0.576 6.576 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.411 0.589 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.271 0.729 34 H 0.420 0.580 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -11.198 9.590 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 H 0.117 0.883 4 N -0.367 5.367 5 C 0.345 3.655 6 O -0.437 6.437 7 C -0.251 4.251 8 C -0.051 4.051 9 C -0.220 4.220 10 C -0.056 4.056 11 C -0.275 4.275 12 C 0.097 3.903 13 O -0.088 6.088 14 C -0.504 4.504 15 H 0.124 0.876 16 C -0.219 4.219 17 N -0.539 5.539 18 Si 0.840 3.160 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.173 1.173 22 C 0.309 3.691 23 N -0.388 5.388 24 O -0.455 6.455 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.125 0.875 28 H 0.250 0.750 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.146 -10.551 9.564 14.287 hybrid contribution 0.032 0.688 -0.268 0.739 sum -1.114 -9.863 9.296 13.600 Atomic orbital electron populations 1.22102 0.91276 1.03618 1.03977 1.20828 0.97015 0.97600 0.83522 0.88322 1.45504 1.68799 1.14556 1.07847 1.18427 0.77286 0.86105 0.83689 1.90918 1.50602 1.17048 1.85136 1.19227 1.17865 0.96329 0.91657 1.21272 0.93471 0.90410 0.99930 1.21153 1.07007 1.01637 0.92186 1.21436 0.93112 0.91901 0.99155 1.21311 1.10648 0.97310 0.98238 1.20012 0.91059 0.85280 0.93956 1.84170 1.69911 1.17673 1.37040 1.22042 1.46757 0.92176 0.89459 0.87617 1.26723 0.95800 0.96060 1.03354 1.70308 1.42517 1.08605 1.32464 0.84570 0.79502 0.77198 0.74746 1.18633 1.19722 1.17266 1.20387 0.78991 0.83604 0.86072 1.43509 1.54841 1.33912 1.06528 1.90713 1.39504 1.28035 1.87286 0.93552 0.90833 0.87547 0.75033 0.83243 0.82077 0.82663 0.85599 0.91992 0.74854 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.38 71.98 0.68 -2.86 16 2 C 0.12 3.38 2.98 44.25 0.13 3.51 16 3 H 0.10 3.16 7.57 -2.39 -0.02 3.14 16 4 N -0.71 -24.66 4.90 -449.26 -2.20 -26.86 16 5 C 0.55 25.72 7.73 86.69 0.67 26.39 16 6 O -0.56 -32.16 14.83 16.90 0.25 -31.91 16 7 C -0.25 -11.13 5.89 -19.98 -0.12 -11.24 16 8 C -0.03 -1.08 9.54 22.52 0.21 -0.87 16 9 C -0.20 -5.85 10.03 22.25 0.22 -5.62 16 10 C -0.04 -1.22 10.03 22.30 0.22 -1.00 16 11 C -0.26 -11.09 9.16 22.36 0.20 -10.89 16 12 C 0.15 7.96 6.66 22.91 0.15 8.11 16 13 O -0.19 -11.78 7.84 0.79 0.01 -11.78 16 14 C -0.43 -25.84 9.49 67.93 0.64 -25.19 16 15 H 0.11 5.72 5.21 -2.91 -0.02 5.71 16 16 C -0.02 -1.17 5.49 84.85 0.47 -0.71 16 17 N -0.90 -58.31 13.67 21.62 0.30 -58.02 16 18 Si 1.02 43.88 29.55 68.60 2.03 45.91 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 22 C 0.53 12.47 7.49 87.66 0.66 13.13 16 23 N -0.82 -10.72 8.77 -173.54 -1.52 -12.24 16 24 O -0.58 -17.66 16.67 -3.00 -0.05 -17.71 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.11 1.57 7.56 -2.39 -0.02 1.56 16 28 H 0.41 12.52 5.82 -92.71 -0.54 11.98 16 29 H 0.15 3.89 6.40 -2.91 -0.02 3.87 16 30 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.13 5.48 5.64 -2.91 -0.02 5.46 16 33 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.42 3.10 8.25 -92.71 -0.76 2.34 16 35 H 0.42 4.05 8.93 -92.70 -0.83 3.22 16 Total: -1.00 -89.21 307.51 2.00 -87.21 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.95 Total: 32.62 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.15 Total: -7.24 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.43 Total: -97.12 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: 0.21 Total: -61.39 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -89.21 2.00 -87.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194079863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.423 kcal (2) G-P(sol) polarization free energy of solvation -89.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds