Wall clock time and date at job start Tue Mar 31 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47299 * 2 1 4 4 N 1.46497 * 109.47468 * 120.00323 * 2 1 3 5 5 C 1.34774 * 120.00223 * 275.00354 * 4 2 1 6 6 O 1.21600 * 119.99694 * 359.97438 * 5 4 2 7 7 C 1.47535 * 120.00217 * 179.97438 * 5 4 2 8 8 C 1.39666 * 120.20000 * 0.02562 * 7 5 4 9 9 C 1.37826 * 119.92254 * 179.97438 * 8 7 5 10 10 C 1.38571 * 120.32198 * 359.97438 * 9 8 7 11 11 C 1.38025 * 120.40291 * 0.02562 * 10 9 8 12 12 C 1.38831 * 120.07201 * 359.97438 * 11 10 9 13 13 O 1.35518 * 120.16239 * 180.02562 * 12 11 10 14 14 C 1.34818 * 117.00205 * 354.39162 * 13 12 11 15 15 H 1.08011 * 119.99422 * 5.05603 * 14 13 12 16 16 C 1.38693 * 120.00642 * 185.05484 * 14 13 12 17 17 N 1.31518 * 120.00332 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46910 * 89.99807 * 18 16 14 20 20 H 1.48498 * 109.46957 * 209.99907 * 18 16 14 21 21 H 1.48498 * 109.47151 * 330.00281 * 18 16 14 22 22 C 1.50700 * 109.47227 * 240.00153 * 2 1 3 23 23 N 1.34780 * 119.99508 * 60.00096 * 22 2 1 24 24 O 1.21275 * 120.00231 * 239.99691 * 22 2 1 25 25 H 1.08998 * 109.46807 * 299.99901 * 1 2 3 26 26 H 1.08997 * 109.47098 * 59.99372 * 1 2 3 27 27 H 1.08989 * 109.47165 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00311 * 94.99536 * 4 2 1 29 29 H 1.07997 * 120.03252 * 359.97438 * 8 7 5 30 30 H 1.07991 * 119.83480 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.79485 * 180.27999 * 10 9 8 32 32 H 1.08003 * 119.96584 * 180.02562 * 11 10 9 33 33 H 0.96997 * 120.00041 * 180.02562 * 17 16 14 34 34 H 0.97001 * 120.00519 * 0.02562 * 23 22 2 35 35 H 0.97007 * 119.99613 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8582 1.1615 2.4117 7 6 2.6384 -0.7141 3.5618 8 6 2.9719 -2.0691 3.5037 9 6 3.4308 -2.7132 4.6324 10 6 3.5640 -2.0228 5.8265 11 6 3.2383 -0.6835 5.8990 12 6 2.7745 -0.0183 4.7722 13 8 2.4546 1.2968 4.8412 14 6 2.4980 1.8742 6.0587 15 1 2.8564 1.3138 6.9096 16 6 2.0823 3.1877 6.2186 17 7 2.1251 3.7510 7.4062 18 14 1.4617 4.1566 4.7470 19 1 -0.0056 3.9697 4.6144 20 1 1.7615 5.5979 4.9413 21 1 2.1356 3.6723 3.5156 22 6 2.0323 -0.7104 -1.2305 23 7 1.7067 -0.2498 -2.4546 24 8 2.7296 -1.6964 -1.1193 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 2.2491 -1.6319 1.1525 29 1 2.8702 -2.6115 2.5753 30 1 3.6887 -3.7609 4.5858 31 1 3.9287 -2.5348 6.7047 32 1 3.3452 -0.1521 6.8332 33 1 1.8340 4.6695 7.5181 34 1 1.1493 0.5391 -2.5435 35 1 2.0304 -0.7068 -3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194079879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:03 Heat of formation + Delta-G solvation = -72.489304 kcal Electronic energy + Delta-G solvation = -21442.493141 eV Core-core repulsion = 18020.472422 eV Total energy + Delta-G solvation = -3422.020719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.30667 -39.44999 -38.08920 -36.51176 -34.70816 -33.96210 -32.44781 -31.35042 -29.51056 -29.17156 -25.38531 -24.85824 -23.13911 -21.43792 -20.53653 -20.02117 -18.47200 -17.89525 -17.53097 -16.78598 -16.02276 -15.72843 -15.15848 -14.75125 -14.44051 -14.35791 -14.07608 -13.76281 -13.69817 -13.52313 -12.96198 -12.57100 -12.36780 -12.34535 -12.16588 -11.71007 -11.37399 -11.25538 -10.81261 -10.72245 -10.14455 -10.05359 -9.99449 -9.63250 -9.10681 -8.89629 -8.85795 -8.36484 -7.46616 -6.46732 -4.11712 1.58306 2.21630 2.36048 3.01754 3.30511 3.36243 3.53234 3.64367 3.64820 4.34689 4.52144 4.56484 4.75044 4.97095 5.07406 5.10523 5.29376 5.41172 5.49359 5.64776 5.73323 5.97045 6.06179 6.07425 6.40092 6.45785 6.55874 6.65232 6.85723 7.01734 7.03659 7.16842 7.49876 7.68503 7.90524 7.95466 7.97452 8.80947 8.89127 9.52113 10.58532 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.006272 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.928712 B = 4463.195364 C = 6017.424870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.115 0.885 4 N -0.725 5.725 5 C 0.566 3.434 6 O -0.519 6.519 7 C -0.226 4.226 8 C -0.038 4.038 9 C -0.220 4.220 10 C -0.050 4.050 11 C -0.228 4.228 12 C 0.203 3.797 13 O -0.166 6.166 14 C -0.396 4.396 15 H 0.108 0.892 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.238 1.238 22 C 0.518 3.482 23 N -0.851 5.851 24 O -0.538 6.538 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.404 0.596 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.281 0.719 34 H 0.404 0.596 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 -8.624 -15.286 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.132 0.868 4 N -0.382 5.382 5 C 0.356 3.644 6 O -0.395 6.395 7 C -0.231 4.231 8 C -0.057 4.057 9 C -0.239 4.239 10 C -0.068 4.068 11 C -0.247 4.247 12 C 0.145 3.855 13 O -0.066 6.066 14 C -0.471 4.471 15 H 0.125 0.875 16 C -0.134 4.134 17 N -0.506 5.506 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.161 1.161 22 C 0.302 3.698 23 N -0.416 5.416 24 O -0.415 6.415 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.242 0.758 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -2.222 -7.957 -14.993 17.118 hybrid contribution -0.252 0.180 -0.747 0.809 sum -2.474 -7.777 -15.740 17.730 Atomic orbital electron populations 1.22158 0.93083 1.02953 1.03652 1.20626 0.95542 0.98357 0.83724 0.86765 1.45675 1.69851 1.14529 1.08168 1.18199 0.77298 0.86467 0.82389 1.90848 1.49164 1.15078 1.84448 1.18770 1.17445 0.94353 0.92541 1.20830 0.94958 0.92156 0.97767 1.20555 1.10144 0.99711 0.93501 1.20978 0.95140 0.93663 0.97039 1.21279 1.08213 0.95478 0.99685 1.19006 0.90624 0.83936 0.91946 1.83772 1.72990 1.17421 1.32463 1.20929 1.44613 0.97557 0.84007 0.87456 1.24493 0.95289 0.95902 0.97741 1.69639 1.44310 1.14653 1.22007 0.86192 0.80103 0.77468 0.83676 1.19977 1.21314 1.16124 1.20781 0.79312 0.84241 0.85491 1.43778 1.56035 1.33957 1.07798 1.90736 1.37595 1.26373 1.86746 0.90186 0.91496 0.91894 0.75832 0.86608 0.86925 0.86797 0.84390 0.90857 0.76749 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.38 37.16 0.35 -1.36 16 2 C 0.13 1.63 2.98 -69.09 -0.21 1.42 16 3 H 0.11 1.55 7.58 -51.93 -0.39 1.16 16 4 N -0.73 -11.43 4.90 -55.98 -0.27 -11.70 16 5 C 0.57 11.50 7.73 -12.47 -0.10 11.40 16 6 O -0.52 -12.48 14.83 -16.58 -0.25 -12.73 16 7 C -0.23 -4.69 5.89 -104.81 -0.62 -5.31 16 8 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 9 C -0.22 -3.55 10.02 -39.61 -0.40 -3.95 16 10 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 11 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 12 C 0.20 4.81 6.66 -38.60 -0.26 4.55 16 13 O -0.17 -4.56 6.67 -21.06 -0.14 -4.70 16 14 C -0.40 -11.30 9.95 30.90 0.31 -10.99 16 15 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 16 C 0.07 2.03 5.49 -17.52 -0.10 1.94 16 17 N -0.87 -25.22 13.96 55.48 0.77 -24.45 16 18 Si 0.90 22.90 28.62 -169.99 -4.86 18.04 16 19 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.24 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.52 5.97 7.49 -10.98 -0.08 5.89 16 23 N -0.85 -5.82 8.77 31.22 0.27 -5.55 16 24 O -0.54 -8.14 16.67 5.56 0.09 -8.04 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.49 7.56 -51.93 -0.39 0.09 16 27 H 0.06 0.64 8.14 -51.94 -0.42 0.21 16 28 H 0.40 5.86 5.82 -40.82 -0.24 5.62 16 29 H 0.12 1.60 6.40 -52.49 -0.34 1.26 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.14 3.03 5.64 -52.48 -0.30 2.74 16 33 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.40 1.67 8.25 -40.82 -0.34 1.34 16 35 H 0.40 2.23 8.93 -40.82 -0.36 1.87 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -34.78 306.39 -5.46 -40.24 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.47 Total: 8.15 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.23 Total: -3.88 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.77 Total: -41.70 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.29 Total: -25.47 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.86 Total: 18.04 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.78 -5.46 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194079879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.249 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds