Wall clock time and date at job start Tue Mar 31 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34692 * 117.00377 * 2 1 4 4 O 1.21447 * 119.99689 * 359.97438 * 3 2 1 5 5 C 1.47893 * 120.00592 * 179.97438 * 3 2 1 6 6 C 1.39912 * 120.47080 * 179.97438 * 5 3 2 7 7 C 1.38444 * 118.35214 * 179.72763 * 6 5 3 8 8 C 1.39305 * 119.19844 * 0.25238 * 7 6 5 9 9 C 1.48337 * 119.56917 * 179.97438 * 8 7 6 10 10 O 1.21491 * 120.00193 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00321 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00113 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47105 * 324.98733 * 12 11 9 14 14 C 1.52995 * 109.47806 * 84.99483 * 12 11 9 15 15 C 1.50702 * 109.46701 * 204.99595 * 12 11 9 16 16 H 1.08000 * 120.00453 * 359.97438 * 15 12 11 17 17 C 1.37881 * 119.99849 * 179.97438 * 15 12 11 18 18 N 1.31512 * 120.00257 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99936 * 179.97438 * 17 15 12 20 20 H 1.48508 * 109.46863 * 89.99698 * 19 17 15 21 21 H 1.48503 * 109.47092 * 209.99570 * 19 17 15 22 22 H 1.48491 * 109.47130 * 329.99989 * 19 17 15 23 23 N 1.32714 * 120.86365 * 359.97438 * 8 7 6 24 24 C 1.31411 * 121.81053 * 0.02562 * 23 8 7 25 25 H 1.09001 * 109.47358 * 59.99930 * 1 2 3 26 26 H 1.09001 * 109.47802 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47386 * 300.00093 * 1 2 3 28 28 H 1.08002 * 120.82615 * 0.02562 * 6 5 3 29 29 H 1.08001 * 120.40389 * 180.23091 * 7 6 5 30 30 H 0.96997 * 119.99358 * 359.97438 * 11 9 8 31 31 H 1.09004 * 109.47077 * 299.99873 * 14 12 11 32 32 H 1.09005 * 109.47095 * 59.99198 * 14 12 11 33 33 H 1.08999 * 109.47766 * 179.97438 * 14 12 11 34 34 H 0.96999 * 120.00282 * 179.97438 * 18 17 15 35 35 H 1.07997 * 119.64673 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2186 -0.0005 5 6 3.5404 1.2775 0.0006 6 6 4.1857 2.5189 0.0000 7 6 5.5700 2.5403 0.0064 8 6 6.2682 1.3349 0.0077 9 6 7.7515 1.3482 0.0139 10 8 8.3496 2.4057 0.0174 11 7 8.4359 0.1870 0.0147 12 6 9.9008 0.2002 0.0214 13 1 10.2592 1.0463 -0.5648 14 6 10.4033 0.3277 1.4609 15 6 10.4174 -1.0818 -0.5792 16 1 9.7239 -1.8316 -0.9304 17 6 11.7754 -1.2976 -0.6804 18 7 12.6200 -0.3844 -0.2533 19 14 12.4157 -2.8870 -1.4242 20 1 12.5851 -2.7147 -2.8895 21 1 13.7246 -3.2283 -0.8114 22 1 11.4465 -3.9813 -1.1633 23 7 5.6238 0.1747 0.0035 24 6 4.3112 0.1115 -0.0026 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.6181 3.4378 -0.0004 29 1 6.1021 3.4801 0.0100 30 1 7.9585 -0.6573 0.0116 31 1 10.0296 1.2550 1.8953 32 1 10.0448 -0.5184 2.0472 33 1 11.4932 0.3371 1.4659 34 1 13.5754 -0.5364 -0.3241 35 1 3.8227 -0.8517 -0.0055 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194648112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:47 Heat of formation + Delta-G solvation = -106.877807 kcal Electronic energy + Delta-G solvation = -20498.870646 eV Core-core repulsion = 17075.358729 eV Total energy + Delta-G solvation = -3423.511917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08732 -41.16678 -39.89612 -37.61819 -36.81634 -34.55624 -33.78299 -33.00350 -30.88614 -28.82224 -27.35494 -26.47720 -24.77598 -23.56127 -22.35760 -21.36077 -19.82413 -19.18260 -18.42135 -17.86969 -17.50139 -17.47992 -16.88753 -16.28384 -16.15225 -15.83007 -15.37806 -14.90127 -14.73285 -14.42064 -14.34541 -14.16339 -13.83835 -13.64573 -13.04197 -13.00032 -12.89158 -12.76824 -12.27269 -12.13578 -11.94140 -11.83844 -11.33907 -11.24313 -11.13465 -10.68532 -10.59883 -10.51426 -9.82300 -8.17757 -6.35141 -1.02944 0.03008 1.06517 1.46687 1.47054 1.50365 1.58265 1.83575 2.18968 2.45959 2.70303 3.02357 3.12944 3.47284 3.62028 3.74001 3.80409 3.93412 4.32046 4.38012 4.60274 4.67575 4.73005 4.79949 4.80497 4.91492 5.06200 5.18904 5.26192 5.39016 5.55786 5.65576 5.85032 6.07203 6.42295 6.53299 6.70421 6.86447 7.25089 7.41038 8.88742 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.003398 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.725157 B = 8239.193705 C = 8942.611138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.524 3.476 4 O -0.523 6.523 5 C -0.166 4.166 6 C -0.003 4.003 7 C -0.124 4.124 8 C 0.108 3.892 9 C 0.546 3.454 10 O -0.578 6.578 11 N -0.680 5.680 12 C 0.267 3.733 13 H 0.007 0.993 14 C -0.135 4.135 15 C -0.550 4.550 16 H 0.072 0.928 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.973 3.027 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.260 1.260 23 N -0.478 5.478 24 C 0.165 3.835 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.066 0.934 28 H 0.177 0.823 29 H 0.162 0.838 30 H 0.411 0.589 31 H 0.016 0.984 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.267 0.733 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.411 -1.019 0.941 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.414 6.414 5 C -0.170 4.170 6 C -0.029 4.029 7 C -0.145 4.145 8 C -0.028 4.028 9 C 0.330 3.670 10 O -0.459 6.459 11 N -0.327 5.327 12 C 0.164 3.836 13 H 0.024 0.976 14 C -0.193 4.193 15 C -0.588 4.588 16 H 0.090 0.910 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.185 1.185 23 N -0.189 5.189 24 C 0.004 3.996 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.085 0.915 28 H 0.194 0.806 29 H 0.179 0.821 30 H 0.247 0.753 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.454 -0.752 0.968 22.488 hybrid contribution -0.064 0.063 -0.307 0.320 sum -22.519 -0.688 0.661 22.539 Atomic orbital electron populations 1.23660 0.73611 1.06181 1.02911 1.86526 1.25686 1.30960 1.83481 1.20793 0.88199 0.81947 0.72181 1.90842 1.66947 1.36854 1.46717 1.20397 0.90970 0.96314 1.09270 1.21935 0.93022 0.98563 0.89351 1.22182 0.94345 0.99522 0.98472 1.21399 0.93560 0.90820 0.97055 1.18461 0.86557 0.84441 0.77507 1.90723 1.70263 1.31878 1.53023 1.46255 1.08745 1.08207 1.69513 1.18505 0.74711 0.96595 0.93742 0.97558 1.21911 1.03060 0.97291 0.97079 1.21518 0.92700 1.02914 1.41625 0.91019 1.25782 0.96790 1.00426 0.95368 1.70036 1.02967 1.35768 1.46644 0.85325 0.77734 0.79007 0.78163 1.20300 1.20785 1.18452 1.67682 1.11423 1.27666 1.12169 1.23654 0.87476 0.99485 0.88937 0.91564 0.84638 0.91533 0.80562 0.82058 0.75321 0.96536 0.94115 0.91037 0.92415 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.26 9.84 -56.01 -0.55 -5.81 16 3 C 0.52 10.03 7.91 70.38 0.56 10.59 16 4 O -0.52 -12.21 16.20 20.01 0.32 -11.89 16 5 C -0.17 -3.30 5.89 -19.94 -0.12 -3.42 16 6 C 0.00 -0.07 9.71 22.72 0.22 0.16 16 7 C -0.12 -3.20 9.62 22.58 0.22 -2.99 16 8 C 0.11 3.46 6.75 41.96 0.28 3.74 16 9 C 0.55 22.88 7.78 86.93 0.68 23.56 16 10 O -0.58 -27.98 15.97 -3.69 -0.06 -28.04 16 11 N -0.68 -29.97 5.06 -448.52 -2.27 -32.24 16 12 C 0.27 14.09 2.56 44.25 0.11 14.20 16 13 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 15 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.02 0.89 5.30 84.66 0.45 1.34 16 18 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 19 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 20 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 N -0.48 -13.37 9.52 -183.87 -1.75 -15.12 16 24 C 0.17 3.40 10.78 85.13 0.92 4.31 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.18 2.79 7.73 -2.91 -0.02 2.77 16 29 H 0.16 4.05 7.63 -2.91 -0.02 4.03 16 30 H 0.41 16.32 7.86 -92.71 -0.73 15.59 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.77 16 32 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.21 2.86 7.62 -2.91 -0.02 2.84 16 Total: -1.00 -68.78 314.86 3.77 -65.01 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.40 Total: 18.63 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.40 Total: 17.47 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.78 Total: -99.46 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.29 Total: -45.74 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -68.78 3.77 -65.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.865 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds