Wall clock time and date at job start Tue Mar 31 2020 01:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34698 * 116.99926 * 2 1 4 4 O 1.21450 * 119.99529 * 359.97438 * 3 2 1 5 5 C 1.47889 * 119.99947 * 180.02562 * 3 2 1 6 6 C 1.39923 * 120.46593 * 179.97438 * 5 3 2 7 7 C 1.38442 * 118.35015 * 179.74908 * 6 5 3 8 8 C 1.39310 * 119.19821 * 0.52722 * 7 6 5 9 9 C 1.48346 * 119.56582 * 179.72649 * 8 7 6 10 10 O 1.21491 * 120.00225 * 359.73668 * 9 8 7 11 11 N 1.34775 * 119.99515 * 179.72860 * 9 8 7 12 12 C 1.46506 * 119.99693 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46660 * 35.00912 * 12 11 9 14 14 C 1.52997 * 109.47289 * 275.00198 * 12 11 9 15 15 C 1.50708 * 109.46796 * 155.00272 * 12 11 9 16 16 H 1.07995 * 119.99755 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99729 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99909 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48498 * 109.46866 * 210.00208 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 N 1.32710 * 120.86227 * 359.45851 * 8 7 6 24 24 C 1.31407 * 121.81191 * 0.27288 * 23 8 7 25 25 H 1.09002 * 109.47231 * 299.99922 * 1 2 3 26 26 H 1.09000 * 109.47468 * 60.00397 * 1 2 3 27 27 H 1.09011 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.82349 * 0.02562 * 6 5 3 29 29 H 1.08002 * 120.40671 * 180.27672 * 7 6 5 30 30 H 0.97000 * 120.00190 * 0.02562 * 11 9 8 31 31 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 32 32 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 33 33 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 34 34 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 35 35 H 1.08009 * 119.64610 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2187 -0.0005 5 6 3.5403 1.2776 -0.0006 6 6 4.1857 2.5191 -0.0011 7 6 5.5699 2.5405 0.0037 8 6 6.2683 1.3351 -0.0023 9 6 7.7517 1.3485 -0.0034 10 8 8.3496 2.4061 -0.0039 11 7 8.4360 0.1874 -0.0037 12 6 9.9010 0.2006 -0.0041 13 1 10.2568 1.0455 0.5853 14 6 10.4094 0.3310 -1.4413 15 6 10.4150 -1.0827 0.5961 16 1 9.7200 -1.8330 0.9428 17 6 11.7726 -1.2986 0.7026 18 7 12.6189 -0.3844 0.2808 19 14 12.4098 -2.8888 1.4472 20 1 12.5841 -3.9021 0.3757 21 1 13.7157 -2.6375 2.1080 22 1 11.4363 -3.3910 2.4497 23 7 5.6238 0.1749 -0.0018 24 6 4.3112 0.1117 -0.0009 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.6180 3.4378 -0.0007 29 1 6.1021 3.4803 0.0079 30 1 7.9585 -0.6570 -0.0035 31 1 11.4993 0.3413 -1.4416 32 1 10.0375 1.2591 -1.8754 33 1 10.0534 -0.5140 -2.0307 34 1 13.5740 -0.5365 0.3554 35 1 3.8228 -0.8516 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194648121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:51 Heat of formation + Delta-G solvation = -85.689346 kcal Electronic energy + Delta-G solvation = -20497.915135 eV Core-core repulsion = 17075.322019 eV Total energy + Delta-G solvation = -3422.593116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.10547 -40.08165 -38.41189 -36.80935 -34.92357 -33.12263 -32.23297 -31.90616 -29.08554 -28.09910 -25.45329 -25.20475 -23.77916 -22.16860 -21.11437 -19.66342 -18.57089 -17.98497 -17.50479 -16.72863 -16.37504 -16.02224 -15.15299 -14.94402 -14.79131 -14.51676 -14.15412 -13.81660 -13.55322 -13.27880 -13.12849 -12.66536 -12.50584 -12.41183 -11.72814 -11.18693 -11.12571 -11.06591 -10.96159 -10.78672 -10.36853 -10.24568 -10.24159 -9.98638 -9.43526 -9.28978 -9.06150 -8.57462 -7.98565 -6.13360 -4.22492 0.03089 0.99564 2.06589 2.25703 3.10152 3.25450 3.32042 3.34690 3.65622 3.95180 4.14064 4.35642 4.36703 4.50800 4.71981 4.74496 4.82633 4.88054 5.14099 5.19136 5.24084 5.53481 5.68817 5.78876 5.96622 6.26512 6.79313 6.93139 7.10161 7.30598 7.34642 7.44274 7.59262 7.69563 7.88381 8.11349 8.58114 8.72346 8.99147 9.44574 10.92792 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.003398 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.496633 B = 8237.562220 C = 8942.115293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.518 3.482 4 O -0.503 6.503 5 C -0.177 4.177 6 C -0.015 4.015 7 C -0.130 4.130 8 C 0.132 3.868 9 C 0.547 3.453 10 O -0.542 6.542 11 N -0.678 5.678 12 C 0.261 3.739 13 H 0.052 0.948 14 C -0.148 4.148 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 N -0.464 5.464 24 C 0.159 3.841 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.401 0.599 31 H 0.092 0.908 32 H 0.015 0.985 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.921 0.517 -1.202 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.269 6.269 3 C 0.362 3.638 4 O -0.392 6.392 5 C -0.180 4.180 6 C -0.041 4.041 7 C -0.151 4.151 8 C -0.006 4.006 9 C 0.329 3.671 10 O -0.420 6.420 11 N -0.325 5.325 12 C 0.160 3.840 13 H 0.070 0.930 14 C -0.206 4.206 15 C -0.572 4.572 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 N -0.175 5.175 24 C -0.002 4.002 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.172 0.828 29 H 0.178 0.822 30 H 0.236 0.764 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.926 0.810 -1.212 19.979 hybrid contribution -0.649 -0.449 0.355 0.865 sum -20.575 0.361 -0.857 20.596 Atomic orbital electron populations 1.23326 0.75522 1.04038 1.02745 1.86539 1.23898 1.32262 1.84170 1.20962 0.88585 0.81634 0.72639 1.90840 1.66617 1.36047 1.45708 1.20245 0.90392 0.96401 1.10994 1.21733 0.94064 0.97423 0.90862 1.22178 0.93474 1.00475 0.98952 1.22088 0.96221 0.89096 0.93242 1.17887 0.84485 0.85584 0.79190 1.90759 1.68681 1.30826 1.51735 1.46510 1.10220 1.07118 1.68607 1.18894 0.72342 0.98491 0.94310 0.93036 1.22088 1.04553 0.96889 0.97095 1.21212 0.92126 1.02429 1.41475 0.91831 1.24883 0.96577 0.97076 0.95136 1.69901 1.02623 1.33690 1.45938 0.86415 0.78296 0.82932 0.79288 1.20501 1.21085 1.19777 1.67778 1.09910 1.28251 1.11530 1.23224 0.88722 0.98058 0.90167 0.91684 0.91682 0.87694 0.82849 0.82226 0.76420 0.88911 0.96547 0.95240 0.92531 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.22 9.84 -40.49 -0.40 -3.62 16 3 C 0.52 5.71 7.91 34.68 0.27 5.99 16 4 O -0.50 -6.53 16.20 -19.23 -0.31 -6.84 16 5 C -0.18 -2.00 5.89 -104.74 -0.62 -2.61 16 6 C -0.02 -0.17 9.71 -38.88 -0.38 -0.55 16 7 C -0.13 -1.73 9.62 -39.11 -0.38 -2.11 16 8 C 0.13 2.12 6.75 -82.93 -0.56 1.56 16 9 C 0.55 11.15 7.78 -12.10 -0.09 11.06 16 10 O -0.54 -12.57 15.97 5.37 0.09 -12.48 16 11 N -0.68 -14.60 5.06 -55.71 -0.28 -14.88 16 12 C 0.26 6.64 2.56 -69.08 -0.18 6.47 16 13 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 15 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.72 11.32 55.43 0.63 -24.09 16 19 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 N -0.46 -6.79 9.52 -9.46 -0.09 -6.88 16 24 C 0.16 1.84 10.78 -17.16 -0.19 1.65 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.15 1.44 7.73 -52.49 -0.41 1.03 16 29 H 0.16 2.02 7.63 -52.49 -0.40 1.62 16 30 H 0.40 7.92 7.86 -40.82 -0.32 7.60 16 31 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.18 1.54 7.62 -52.48 -0.40 1.14 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -31.30 314.86 -5.63 -36.93 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.89 Total: 4.91 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -1.10 Total: 6.64 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.26 Total: -45.85 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.62 Total: -22.95 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.30 -5.63 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.756 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds