Wall clock time and date at job start Tue Mar 31 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34698 * 116.99926 * 2 1 4 4 O 1.21450 * 119.99529 * 359.97438 * 3 2 1 5 5 C 1.47889 * 119.99947 * 180.02562 * 3 2 1 6 6 C 1.39923 * 120.46593 * 179.97438 * 5 3 2 7 7 C 1.38442 * 118.35015 * 179.74908 * 6 5 3 8 8 C 1.39310 * 119.19821 * 0.52722 * 7 6 5 9 9 C 1.48346 * 119.56582 * 179.72649 * 8 7 6 10 10 O 1.21491 * 120.00225 * 359.73668 * 9 8 7 11 11 N 1.34775 * 119.99515 * 179.72860 * 9 8 7 12 12 C 1.46506 * 119.99693 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46660 * 35.00912 * 12 11 9 14 14 C 1.52997 * 109.47289 * 275.00198 * 12 11 9 15 15 C 1.50708 * 109.46796 * 155.00272 * 12 11 9 16 16 H 1.07995 * 119.99755 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99729 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99909 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48498 * 109.46866 * 210.00208 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 N 1.32710 * 120.86227 * 359.45851 * 8 7 6 24 24 C 1.31407 * 121.81191 * 0.27288 * 23 8 7 25 25 H 1.09002 * 109.47231 * 299.99922 * 1 2 3 26 26 H 1.09000 * 109.47468 * 60.00397 * 1 2 3 27 27 H 1.09011 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.82349 * 0.02562 * 6 5 3 29 29 H 1.08002 * 120.40671 * 180.27672 * 7 6 5 30 30 H 0.97000 * 120.00190 * 0.02562 * 11 9 8 31 31 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 32 32 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 33 33 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 34 34 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 35 35 H 1.08009 * 119.64610 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4019 2.2187 -0.0005 5 6 3.5403 1.2776 -0.0006 6 6 4.1857 2.5191 -0.0011 7 6 5.5699 2.5405 0.0037 8 6 6.2683 1.3351 -0.0023 9 6 7.7517 1.3485 -0.0034 10 8 8.3496 2.4061 -0.0039 11 7 8.4360 0.1874 -0.0037 12 6 9.9010 0.2006 -0.0041 13 1 10.2568 1.0455 0.5853 14 6 10.4094 0.3310 -1.4413 15 6 10.4150 -1.0827 0.5961 16 1 9.7200 -1.8330 0.9428 17 6 11.7726 -1.2986 0.7026 18 7 12.6189 -0.3844 0.2808 19 14 12.4098 -2.8888 1.4472 20 1 12.5841 -3.9021 0.3757 21 1 13.7157 -2.6375 2.1080 22 1 11.4363 -3.3910 2.4497 23 7 5.6238 0.1749 -0.0018 24 6 4.3112 0.1117 -0.0009 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 3.6180 3.4378 -0.0007 29 1 6.1021 3.4803 0.0079 30 1 7.9585 -0.6570 -0.0035 31 1 11.4993 0.3413 -1.4416 32 1 10.0375 1.2591 -1.8754 33 1 10.0534 -0.5140 -2.0307 34 1 13.5740 -0.5365 0.3554 35 1 3.8228 -0.8516 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194648121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:50 Heat of formation + Delta-G solvation = -106.897834 kcal Electronic energy + Delta-G solvation = -20498.834804 eV Core-core repulsion = 17075.322019 eV Total energy + Delta-G solvation = -3423.512785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.08679 -41.16595 -39.89599 -37.61710 -36.81605 -34.55646 -33.78301 -33.00330 -30.88650 -28.82144 -27.35540 -26.47705 -24.77575 -23.56123 -22.35743 -21.36102 -19.82421 -19.18216 -18.42115 -17.86954 -17.50019 -17.48002 -16.88794 -16.28467 -16.15283 -15.82873 -15.37852 -14.90173 -14.73285 -14.42259 -14.34534 -14.16297 -13.83777 -13.64580 -13.04218 -13.02345 -12.87640 -12.73298 -12.29844 -12.14538 -11.94137 -11.83865 -11.33949 -11.24298 -11.12583 -10.68673 -10.60157 -10.51348 -9.82260 -8.17776 -6.35178 -1.02966 0.03020 1.06509 1.46585 1.47243 1.50395 1.58107 1.83574 2.18979 2.45918 2.70303 3.02339 3.12900 3.47272 3.61999 3.73990 3.80410 3.93393 4.32024 4.38030 4.60253 4.67556 4.72982 4.79945 4.80464 4.91448 5.06117 5.18870 5.26182 5.39041 5.55736 5.65489 5.85032 6.07149 6.42292 6.53277 6.70383 6.86450 7.25082 7.41020 8.88708 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030544 B = 0.003398 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.496633 B = 8237.562220 C = 8942.115293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.524 3.476 4 O -0.523 6.523 5 C -0.166 4.166 6 C -0.003 4.003 7 C -0.124 4.124 8 C 0.108 3.892 9 C 0.546 3.454 10 O -0.578 6.578 11 N -0.680 5.680 12 C 0.267 3.733 13 H 0.007 0.993 14 C -0.135 4.135 15 C -0.550 4.550 16 H 0.072 0.928 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.265 1.265 23 N -0.478 5.478 24 C 0.165 3.835 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.177 0.823 29 H 0.162 0.838 30 H 0.411 0.589 31 H 0.071 0.929 32 H 0.016 0.984 33 H 0.040 0.960 34 H 0.267 0.733 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.394 -1.011 -0.997 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.414 6.414 5 C -0.170 4.170 6 C -0.029 4.029 7 C -0.145 4.145 8 C -0.028 4.028 9 C 0.330 3.670 10 O -0.459 6.459 11 N -0.327 5.327 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.193 4.193 15 C -0.588 4.588 16 H 0.090 0.910 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.189 1.189 23 N -0.189 5.189 24 C 0.004 3.996 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.194 0.806 29 H 0.179 0.821 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.437 -0.740 -1.011 22.472 hybrid contribution -0.069 0.052 0.287 0.300 sum -22.506 -0.688 -0.724 22.528 Atomic orbital electron populations 1.23663 0.73609 1.06181 1.02910 1.86530 1.25688 1.30956 1.83484 1.20794 0.88199 0.81948 0.72179 1.90843 1.66939 1.36860 1.46718 1.20398 0.90971 0.96315 1.09273 1.21936 0.93022 0.98560 0.89351 1.22183 0.94345 0.99523 0.98474 1.21403 0.93564 0.90819 0.97049 1.18461 0.86555 0.84441 0.77508 1.90723 1.70268 1.31869 1.53025 1.46257 1.08749 1.08208 1.69508 1.18510 0.74703 0.96600 0.93738 0.97542 1.21912 1.03062 0.97280 0.97086 1.21515 0.92708 1.02795 1.41738 0.91032 1.25780 0.96775 1.00418 0.95392 1.70041 1.02921 1.35634 1.46817 0.85319 0.77502 0.78744 0.78629 1.19560 1.21077 1.18922 1.67678 1.11424 1.27668 1.12170 1.23654 0.87475 0.99488 0.88937 0.91564 0.91529 0.84638 0.80564 0.82057 0.75319 0.91036 0.96540 0.94125 0.92418 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -5.26 9.84 -56.08 -0.55 -5.81 16 3 C 0.52 10.04 7.91 70.38 0.56 10.59 16 4 O -0.52 -12.22 16.20 20.00 0.32 -11.89 16 5 C -0.17 -3.30 5.89 -19.94 -0.12 -3.42 16 6 C 0.00 -0.07 9.71 22.73 0.22 0.16 16 7 C -0.12 -3.21 9.62 22.58 0.22 -2.99 16 8 C 0.11 3.46 6.75 41.96 0.28 3.75 16 9 C 0.55 22.88 7.78 86.94 0.68 23.56 16 10 O -0.58 -27.98 15.97 -3.69 -0.06 -28.04 16 11 N -0.68 -29.97 5.06 -448.49 -2.27 -32.24 16 12 C 0.27 14.09 2.56 44.25 0.11 14.20 16 13 H 0.01 0.41 7.58 -2.39 -0.02 0.39 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 15 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 17 C 0.02 0.89 5.30 84.65 0.45 1.34 16 18 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 19 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 N -0.48 -13.37 9.52 -183.86 -1.75 -15.12 16 24 C 0.17 3.40 10.78 85.13 0.92 4.31 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.18 2.79 7.73 -2.91 -0.02 2.77 16 29 H 0.16 4.06 7.63 -2.91 -0.02 4.03 16 30 H 0.41 16.31 7.86 -92.71 -0.73 15.58 16 31 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.21 2.86 7.62 -2.91 -0.02 2.84 16 Total: -1.00 -68.79 314.86 3.77 -65.02 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.40 Total: 18.62 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.40 Total: 17.47 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.78 Total: -99.46 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.29 Total: -45.74 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -68.79 3.77 -65.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194648121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.883 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds