Wall clock time and date at job start Tue Mar 31 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 C 1.50696 * 109.46941 * 180.02562 * 15 13 12 17 17 C 1.38237 * 119.99765 * 269.72458 * 16 15 13 18 18 C 1.38234 * 119.99750 * 179.76525 * 17 16 15 19 19 C 1.38238 * 120.00208 * 0.49019 * 18 17 16 20 20 N 1.48015 * 120.00503 * 179.76538 * 19 18 17 21 21 O 1.21799 * 120.00045 * 180.02562 * 20 19 18 22 22 O 1.21801 * 119.99984 * 0.02562 * 20 19 18 23 23 C 1.38239 * 119.99676 * 359.79317 * 19 18 17 24 24 C 1.38234 * 120.00046 * 90.00416 * 16 15 13 25 25 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 27 27 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 30 30 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 31 31 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 32 32 H 1.07997 * 120.00152 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.00382 * 180.25560 * 18 17 16 34 34 H 1.07999 * 119.99946 * 179.97438 * 23 19 18 35 35 H 1.07998 * 119.99717 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 6 2.6990 0.2396 4.7415 17 6 3.8485 0.9686 4.9825 18 6 3.8928 1.8604 6.0378 19 6 2.7912 2.0157 6.8583 20 7 2.8404 2.9667 7.9914 21 8 1.8699 3.1031 8.7146 22 8 3.8515 3.6128 8.2007 23 6 1.6437 1.2823 6.6208 24 6 1.5975 0.3945 5.5623 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.9028 -0.5285 -4.4375 29 1 2.2491 -1.6317 1.1527 30 1 1.9760 -1.5505 3.8327 31 1 3.6480 -1.1212 3.3987 32 1 4.7104 0.8446 4.3437 33 1 4.7895 2.4330 6.2236 34 1 0.7832 1.4033 7.2621 35 1 0.7011 -0.1788 5.3769 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194720622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:28 Heat of formation + Delta-G solvation = -38.211767 kcal Electronic energy + Delta-G solvation = -20593.294021 eV Core-core repulsion = 17172.759687 eV Total energy + Delta-G solvation = -3420.534334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28075 -41.15503 -39.95532 -37.71687 -36.86204 -34.50443 -34.31729 -32.39155 -31.94777 -29.78061 -27.23308 -26.57262 -24.19026 -23.61944 -22.42749 -21.20716 -20.40470 -19.79946 -19.13412 -18.64834 -17.75159 -17.52190 -16.85691 -16.68849 -15.94186 -15.74867 -15.60971 -14.97233 -14.80631 -14.72099 -14.15185 -14.03091 -13.67624 -13.39314 -13.08515 -12.91865 -12.78608 -12.77320 -12.34434 -12.32240 -12.29407 -12.14523 -11.64019 -11.27402 -10.93889 -10.87557 -10.34984 -10.31807 -9.86779 -8.38963 -6.44302 -1.26119 0.01771 0.26383 0.36622 1.26261 1.35310 1.43169 1.76546 2.15402 2.24862 2.65007 2.97999 3.39771 3.41290 3.53592 3.86353 3.96965 4.04606 4.30045 4.43122 4.46798 4.57342 4.60822 4.70549 4.72587 4.78895 4.82228 5.01738 5.15211 5.22945 5.33310 5.43701 5.50247 5.65520 6.13086 6.46157 6.58966 6.88549 7.19515 7.47299 8.76142 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035188 B = 0.003336 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.531932 B = 8390.333619 C = 8560.479432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.242 3.758 3 H 0.020 0.980 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.936 3.064 9 H -0.261 1.261 10 H -0.264 1.264 11 H -0.295 1.295 12 N -0.699 5.699 13 C 0.504 3.496 14 O -0.594 6.594 15 C -0.102 4.102 16 C -0.008 4.008 17 C -0.108 4.108 18 C -0.057 4.057 19 C -0.070 4.070 20 N 0.032 4.968 21 O -0.181 6.181 22 O -0.185 6.185 23 C -0.056 4.056 24 C -0.104 4.104 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.270 0.730 29 H 0.411 0.589 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -2.146 18.818 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.137 3.863 3 H 0.038 0.962 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.764 3.236 9 H -0.187 1.187 10 H -0.189 1.189 11 H -0.223 1.223 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.476 6.476 15 C -0.141 4.141 16 C -0.009 4.009 17 C -0.126 4.126 18 C -0.076 4.076 19 C -0.153 4.153 20 N 0.546 4.454 21 O -0.394 6.394 22 O -0.398 6.398 23 C -0.075 4.075 24 C -0.123 4.123 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.247 0.753 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.413 -1.777 18.118 18.210 hybrid contribution -0.277 0.762 -0.380 0.895 sum 0.136 -1.015 17.738 17.768 Atomic orbital electron populations 1.22345 0.97946 1.01770 0.99325 1.18716 0.91096 0.93110 0.83416 0.96192 1.21296 1.32213 1.13598 0.89853 0.92087 1.25532 0.96841 0.99135 0.95540 1.69970 1.46724 1.41899 0.98671 0.86050 0.79888 0.80584 0.77062 1.18666 1.18888 1.22283 1.46004 1.65266 1.14586 1.08966 1.21091 0.77473 0.87009 0.85234 1.90701 1.52811 1.18171 1.85877 1.20905 1.07503 0.97813 0.87899 1.20096 0.93234 0.94024 0.93576 1.21391 0.99951 0.94785 0.96468 1.21209 0.97314 0.96742 0.92383 1.21345 1.00770 1.00007 0.93173 1.43945 0.99623 1.00207 1.01584 1.94502 1.27378 1.71940 1.45601 1.94510 1.22175 1.45655 1.77410 1.21235 0.96139 0.92537 0.97631 1.21398 0.99670 0.98179 0.93035 0.91386 0.93483 0.94537 0.92111 0.75272 0.83511 0.84083 0.81634 0.82112 0.81874 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.23 8.97 71.98 0.65 -5.59 16 2 C 0.24 10.47 2.15 44.24 0.10 10.57 16 3 H 0.02 1.00 6.63 -2.38 -0.02 0.98 16 4 C -0.53 -27.14 9.31 25.60 0.24 -26.90 16 5 H 0.06 3.28 7.98 -2.91 -0.02 3.26 16 6 C 0.03 1.59 5.45 84.66 0.46 2.05 16 7 N -0.93 -54.16 13.96 21.45 0.30 -53.86 16 8 Si 0.94 43.29 24.37 68.60 1.67 44.96 16 9 H -0.26 -11.35 6.87 99.48 0.68 -10.66 16 10 H -0.26 -12.16 6.53 99.48 0.65 -11.51 16 11 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 12 N -0.70 -22.59 5.07 -446.08 -2.26 -24.86 16 13 C 0.50 14.45 7.79 87.66 0.68 15.13 16 14 O -0.59 -22.74 15.70 -3.03 -0.05 -22.79 16 15 C -0.10 -1.53 5.83 29.10 0.17 -1.36 16 16 C -0.01 -0.15 4.37 -19.87 -0.09 -0.23 16 17 C -0.11 -1.86 9.70 22.27 0.22 -1.65 16 18 C -0.06 -1.12 9.56 22.27 0.21 -0.91 16 19 C -0.07 -1.57 6.85 36.38 0.25 -1.32 16 20 N 0.03 0.88 4.45 -46.46 -0.21 0.67 16 21 O -0.18 -5.07 18.45 18.89 0.35 -4.72 16 22 O -0.19 -5.27 18.45 18.89 0.35 -4.92 16 23 C -0.06 -1.06 9.56 22.27 0.21 -0.85 16 24 C -0.10 -1.70 9.70 22.27 0.22 -1.49 16 25 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.53 3.27 -2.39 -0.01 1.53 16 28 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.41 10.90 8.54 -92.71 -0.79 10.10 16 30 H 0.15 1.19 8.08 -2.39 -0.02 1.18 16 31 H 0.14 1.35 8.08 -2.38 -0.02 1.33 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.16 2.73 7.61 -2.91 -0.02 2.71 16 34 H 0.16 2.57 7.61 -2.91 -0.02 2.55 16 35 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -71.06 308.72 3.73 -67.33 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.26 Total: 10.72 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 3.31 Total: -12.54 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.17 Total: -78.05 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: 0.65 Total: -32.43 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.96 kcal Total: -71.06 3.73 -67.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194720622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds