Wall clock time and date at job start Tue Mar 31 2020 01:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47135 * 2 1 4 4 C 1.50699 * 109.47278 * 120.00169 * 2 1 3 5 5 H 1.08001 * 120.00487 * 119.99647 * 4 2 1 6 6 C 1.37887 * 119.99724 * 299.99835 * 4 2 1 7 7 N 1.31514 * 119.99947 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 119.99924 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47366 * 90.00002 * 8 6 4 10 10 H 1.48496 * 109.47229 * 210.00058 * 8 6 4 11 11 H 1.48505 * 109.47493 * 330.00131 * 8 6 4 12 12 N 1.46506 * 109.47224 * 239.99457 * 2 1 3 13 13 C 1.34780 * 119.99529 * 84.99934 * 12 2 1 14 14 O 1.21284 * 119.99946 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99836 * 180.02562 * 13 12 2 16 16 C 1.50702 * 109.47220 * 180.02562 * 15 13 12 17 17 C 1.38259 * 119.99847 * 102.87343 * 16 15 13 18 18 C 1.38219 * 119.99842 * 179.73005 * 17 16 15 19 19 C 1.38254 * 119.99723 * 0.27542 * 18 17 16 20 20 C 1.38213 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38216 * 120.00396 * 283.07021 * 16 15 13 22 22 N 1.48021 * 119.99656 * 0.03968 * 21 16 15 23 23 O 1.21803 * 120.00036 * 174.78188 * 22 21 16 24 24 O 1.21801 * 120.00257 * 354.77773 * 22 21 16 25 25 H 1.09002 * 109.47057 * 60.00204 * 1 2 3 26 26 H 1.09004 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 299.99863 * 1 2 3 28 28 H 0.96998 * 120.00278 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00207 * 265.00513 * 12 2 1 30 30 H 1.09000 * 109.47426 * 60.00286 * 15 13 12 31 31 H 1.09000 * 109.47594 * 300.00238 * 15 13 12 32 32 H 1.07996 * 120.00126 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.99964 * 180.25404 * 18 17 16 34 34 H 1.08001 * 119.99609 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.99863 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6260 1.2798 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7002 0.2395 -4.7412 17 6 3.9113 0.7708 -5.1443 18 6 3.9591 1.6547 -6.2058 19 6 2.7952 2.0120 -6.8608 20 6 1.5838 1.4848 -6.4545 21 6 1.5362 0.5998 -5.3935 22 7 0.2389 0.0350 -4.9586 23 8 -0.7964 0.4234 -5.4694 24 8 0.2067 -0.8182 -4.0899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9026 -0.5284 4.4376 29 1 2.2490 -1.6319 -1.1525 30 1 1.9759 -1.5508 -3.8326 31 1 3.6479 -1.1216 -3.3986 32 1 4.8206 0.4914 -4.6329 33 1 4.9057 2.0665 -6.5234 34 1 2.8325 2.7030 -7.6900 35 1 0.6746 1.7643 -6.9659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194720736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:31 Heat of formation + Delta-G solvation = -7.609820 kcal Electronic energy + Delta-G solvation = -21706.502492 eV Core-core repulsion = 18287.295158 eV Total energy + Delta-G solvation = -3419.207334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17174 -39.87149 -38.72435 -36.50379 -35.03238 -33.18585 -32.35434 -32.02792 -30.12036 -28.00398 -26.14601 -25.12245 -22.92823 -22.51409 -21.10664 -19.65798 -19.02103 -18.48879 -17.59348 -17.11635 -16.50972 -15.96443 -15.90157 -15.47546 -14.90878 -14.38719 -14.26369 -13.57937 -13.34291 -12.98041 -12.78412 -12.49768 -12.36888 -12.13290 -11.84792 -11.62103 -11.30823 -11.20326 -10.98509 -10.78041 -10.60255 -10.14324 -9.75509 -9.72330 -9.51546 -9.19529 -9.06941 -8.73372 -8.13218 -6.18947 -4.21057 -0.14084 0.74640 1.34952 1.52847 3.08419 3.22266 3.27379 3.37559 3.43028 3.92783 4.20964 4.21883 4.34439 4.46148 4.70868 4.73919 4.94670 5.16066 5.22439 5.32347 5.40439 5.53890 5.65847 5.81405 5.87156 6.12003 6.39217 6.46991 6.55702 6.64800 6.92658 7.24057 7.32015 7.55398 7.77213 8.15503 8.54372 8.77067 8.92875 9.42411 10.93206 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026666 B = 0.004842 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.758959 B = 5781.284488 C = 6140.608328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 H 0.046 0.954 4 C -0.534 4.534 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.693 5.693 13 C 0.521 3.479 14 O -0.563 6.563 15 C -0.131 4.131 16 C 0.014 3.986 17 C -0.114 4.114 18 C -0.068 4.068 19 C -0.126 4.126 20 C -0.056 4.056 21 C -0.028 4.028 22 N 0.037 4.963 23 O -0.171 6.171 24 O -0.152 6.152 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.397 0.603 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 2.047 -21.504 21.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.135 3.865 3 H 0.064 0.936 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.222 1.222 11 H -0.188 1.188 12 N -0.340 5.340 13 C 0.306 3.694 14 O -0.443 6.443 15 C -0.170 4.170 16 C 0.012 3.988 17 C -0.132 4.132 18 C -0.086 4.086 19 C -0.144 4.144 20 C -0.075 4.075 21 C -0.111 4.111 22 N 0.555 4.445 23 O -0.384 6.384 24 O -0.369 6.369 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.231 0.769 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.544 3.147 -21.505 22.204 hybrid contribution -0.857 0.188 0.452 0.987 sum 3.687 3.334 -21.053 21.632 Atomic orbital electron populations 1.22422 0.99093 1.01096 0.99142 1.19103 0.90309 0.94469 0.82652 0.93598 1.21041 1.33223 1.14387 0.88511 0.90132 1.24815 0.95440 0.96681 0.95524 1.69865 1.44988 1.40125 0.98024 0.86882 0.80710 0.83629 0.77278 1.20200 1.22216 1.18829 1.46064 1.64634 1.13801 1.09515 1.19869 0.78264 0.87104 0.84192 1.90666 1.52148 1.16256 1.85221 1.21222 1.05348 0.98896 0.91567 1.19371 0.91143 0.94606 0.93700 1.21166 0.96934 0.97552 0.97576 1.21564 0.99189 0.94299 0.93523 1.21156 0.91100 1.00843 1.01317 1.21018 1.00477 0.92550 0.93503 1.20901 0.83239 1.04853 1.02129 1.43493 1.02673 0.99297 0.99086 1.94501 1.22313 1.63867 1.57753 1.94496 1.93510 1.25100 1.23758 0.94570 0.92556 0.93649 0.92307 0.76939 0.85135 0.87525 0.83585 0.84069 0.83801 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.96 37.16 0.33 -3.45 16 2 C 0.24 5.84 2.15 -69.08 -0.15 5.69 16 3 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 4 C -0.53 -14.58 9.31 -34.44 -0.32 -14.90 16 5 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 6 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 8 Si 0.89 22.32 24.37 -169.99 -4.14 18.17 16 9 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.26 -6.66 6.53 56.52 0.37 -6.29 16 12 N -0.69 -14.04 5.07 -54.93 -0.28 -14.31 16 13 C 0.52 9.98 6.38 -10.99 -0.07 9.91 16 14 O -0.56 -12.97 15.51 5.55 0.09 -12.88 16 15 C -0.13 -1.78 5.14 -29.04 -0.15 -1.93 16 16 C 0.01 0.18 4.50 -104.62 -0.47 -0.29 16 17 C -0.11 -1.12 9.67 -39.58 -0.38 -1.50 16 18 C -0.07 -0.52 10.05 -39.58 -0.40 -0.92 16 19 C -0.13 -1.00 10.05 -39.58 -0.40 -1.39 16 20 C -0.06 -0.61 9.56 -39.59 -0.38 -0.99 16 21 C -0.03 -0.40 6.55 -79.95 -0.52 -0.92 16 22 N 0.04 0.62 4.45 33.96 0.15 0.77 16 23 O -0.17 -2.93 18.46 -29.46 -0.54 -3.47 16 24 O -0.15 -2.74 14.31 -29.46 -0.42 -3.16 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.40 6.96 8.54 -40.82 -0.35 6.61 16 30 H 0.13 1.69 5.96 -51.93 -0.31 1.38 16 31 H 0.11 1.08 7.97 -51.93 -0.41 0.67 16 32 H 0.15 1.10 8.02 -52.49 -0.42 0.68 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.15 1.41 7.62 -52.49 -0.40 1.01 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -34.94 301.11 -6.54 -41.48 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.70 Total: 3.29 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.00 Total: -8.55 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.65 Total: -39.41 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.88 Total: -19.52 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.94 -6.54 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194720736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.868 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds