Wall clock time and date at job start Tue Mar 31 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47135 * 2 1 4 4 C 1.50699 * 109.47278 * 120.00169 * 2 1 3 5 5 H 1.08001 * 120.00487 * 119.99647 * 4 2 1 6 6 C 1.37887 * 119.99724 * 299.99835 * 4 2 1 7 7 N 1.31514 * 119.99947 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 119.99924 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47366 * 90.00002 * 8 6 4 10 10 H 1.48496 * 109.47229 * 210.00058 * 8 6 4 11 11 H 1.48505 * 109.47493 * 330.00131 * 8 6 4 12 12 N 1.46506 * 109.47224 * 239.99457 * 2 1 3 13 13 C 1.34780 * 119.99529 * 84.99934 * 12 2 1 14 14 O 1.21284 * 119.99946 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99836 * 180.02562 * 13 12 2 16 16 C 1.50702 * 109.47220 * 180.02562 * 15 13 12 17 17 C 1.38259 * 119.99847 * 102.87343 * 16 15 13 18 18 C 1.38219 * 119.99842 * 179.73005 * 17 16 15 19 19 C 1.38254 * 119.99723 * 0.27542 * 18 17 16 20 20 C 1.38213 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38216 * 120.00396 * 283.07021 * 16 15 13 22 22 N 1.48021 * 119.99656 * 0.03968 * 21 16 15 23 23 O 1.21803 * 120.00036 * 174.78188 * 22 21 16 24 24 O 1.21801 * 120.00257 * 354.77773 * 22 21 16 25 25 H 1.09002 * 109.47057 * 60.00204 * 1 2 3 26 26 H 1.09004 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47210 * 299.99863 * 1 2 3 28 28 H 0.96998 * 120.00278 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00207 * 265.00513 * 12 2 1 30 30 H 1.09000 * 109.47426 * 60.00286 * 15 13 12 31 31 H 1.09000 * 109.47594 * 300.00238 * 15 13 12 32 32 H 1.07996 * 120.00126 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.99964 * 180.25404 * 18 17 16 34 34 H 1.08001 * 119.99609 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.99863 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8596 3.5566 8 14 0.6260 1.2798 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 2.1470 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 2.7002 0.2395 -4.7412 17 6 3.9113 0.7708 -5.1443 18 6 3.9591 1.6547 -6.2058 19 6 2.7952 2.0120 -6.8608 20 6 1.5838 1.4848 -6.4545 21 6 1.5362 0.5998 -5.3935 22 7 0.2389 0.0350 -4.9586 23 8 -0.7964 0.4234 -5.4694 24 8 0.2067 -0.8182 -4.0899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9026 -0.5284 4.4376 29 1 2.2490 -1.6319 -1.1525 30 1 1.9759 -1.5508 -3.8326 31 1 3.6479 -1.1216 -3.3986 32 1 4.8206 0.4914 -4.6329 33 1 4.9057 2.0665 -6.5234 34 1 2.8325 2.7030 -7.6900 35 1 0.6746 1.7643 -6.9659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194720736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:30 Heat of formation + Delta-G solvation = -32.159981 kcal Electronic energy + Delta-G solvation = -21707.567067 eV Core-core repulsion = 18287.295158 eV Total energy + Delta-G solvation = -3420.271909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.32555 -41.03086 -39.97213 -37.75313 -36.87057 -34.45201 -34.11293 -32.87117 -31.86074 -29.13304 -27.28872 -27.14557 -23.93667 -23.61152 -22.61013 -21.32819 -20.08496 -19.69585 -19.12728 -18.57588 -17.73115 -17.55427 -17.04871 -16.81515 -16.05333 -15.73888 -15.62502 -14.96351 -14.83881 -14.45457 -14.15288 -13.91299 -13.76247 -13.53247 -13.18040 -13.13448 -12.82464 -12.54479 -12.43771 -12.29841 -12.17725 -11.75405 -11.65669 -11.30649 -10.94678 -10.87829 -10.52000 -10.11167 -9.89829 -8.39686 -6.44705 -1.18856 -0.00206 0.32760 0.50624 1.25299 1.32092 1.41747 1.74096 2.23607 2.24446 2.61322 2.96354 3.26633 3.40957 3.78768 3.93307 4.00596 4.08535 4.22586 4.38502 4.42000 4.47844 4.53437 4.67968 4.74690 4.90634 4.95371 5.06754 5.16254 5.27474 5.29781 5.39814 5.61380 5.63581 6.12234 6.50367 6.56607 6.83958 7.17807 7.41973 8.75463 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026666 B = 0.004842 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.758959 B = 5781.284488 C = 6140.608328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.245 3.755 3 H 0.021 0.979 4 C -0.530 4.530 5 H 0.062 0.938 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.935 3.065 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.695 5.695 13 C 0.519 3.481 14 O -0.603 6.603 15 C -0.120 4.120 16 C -0.014 4.014 17 C -0.117 4.117 18 C -0.050 4.050 19 C -0.112 4.112 20 C -0.068 4.068 21 C -0.059 4.059 22 N 0.038 4.962 23 O -0.191 6.191 24 O -0.190 6.190 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.271 0.729 29 H 0.410 0.590 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 3.235 -23.834 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.140 3.860 3 H 0.038 0.962 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.167 4.167 7 N -0.569 5.569 8 Si 0.763 3.237 9 H -0.189 1.189 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.344 5.344 13 C 0.307 3.693 14 O -0.485 6.485 15 C -0.159 4.159 16 C -0.015 4.015 17 C -0.135 4.135 18 C -0.068 4.068 19 C -0.130 4.130 20 C -0.087 4.087 21 C -0.143 4.143 22 N 0.549 4.451 23 O -0.403 6.403 24 O -0.400 6.400 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.151 0.849 31 H 0.163 0.837 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.203 0.797 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.161 4.277 -23.833 24.986 hybrid contribution -1.213 -0.121 1.029 1.596 sum 4.948 4.156 -22.804 23.702 Atomic orbital electron populations 1.22327 0.98422 1.01569 0.98748 1.18715 0.90732 0.93111 0.83432 0.96162 1.21230 1.32333 1.13633 0.89644 0.91960 1.25472 0.96677 0.99080 0.95428 1.69955 1.46581 1.41773 0.98612 0.86072 0.79910 0.80678 0.77089 1.18878 1.21532 1.19332 1.45916 1.65062 1.14398 1.09009 1.20753 0.76870 0.86708 0.84981 1.90632 1.53654 1.18322 1.85934 1.21151 1.07054 0.98627 0.89037 1.19547 0.92122 0.95784 0.94098 1.21603 0.96396 0.97275 0.98207 1.22155 1.00934 0.92162 0.91566 1.21710 0.89757 0.99936 1.01582 1.21380 1.02375 0.92113 0.92829 1.21277 0.81734 1.07005 1.04276 1.43988 1.03740 0.98877 0.98540 1.94456 1.23794 1.64069 1.57954 1.94462 1.94002 1.26516 1.25047 0.94759 0.91629 0.94142 0.91980 0.75462 0.84876 0.83732 0.81101 0.79615 0.79742 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.26 8.96 71.98 0.65 -6.62 16 2 C 0.25 12.14 2.15 44.24 0.10 12.24 16 3 H 0.02 1.12 6.63 -2.39 -0.02 1.11 16 4 C -0.53 -29.33 9.31 25.60 0.24 -29.09 16 5 H 0.06 3.60 7.98 -2.91 -0.02 3.58 16 6 C 0.03 1.92 5.45 84.66 0.46 2.38 16 7 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 8 Si 0.93 46.09 24.37 68.60 1.67 47.77 16 9 H -0.26 -12.37 6.87 99.48 0.68 -11.69 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.27 -13.36 6.53 99.48 0.65 -12.71 16 12 N -0.70 -28.28 5.07 -446.09 -2.26 -30.55 16 13 C 0.52 19.82 6.38 87.65 0.56 20.37 16 14 O -0.60 -28.01 15.51 -3.04 -0.05 -28.06 16 15 C -0.12 -3.12 5.14 29.10 0.15 -2.97 16 16 C -0.01 -0.33 4.50 -19.86 -0.09 -0.42 16 17 C -0.12 -1.85 9.67 22.27 0.22 -1.63 16 18 C -0.05 -0.51 10.05 22.27 0.22 -0.29 16 19 C -0.11 -1.27 10.05 22.27 0.22 -1.05 16 20 C -0.07 -1.34 9.56 22.27 0.21 -1.13 16 21 C -0.06 -1.64 6.55 36.37 0.24 -1.40 16 22 N 0.04 1.31 4.45 -46.47 -0.21 1.10 16 23 O -0.19 -6.78 18.46 18.88 0.35 -6.43 16 24 O -0.19 -7.10 14.31 18.89 0.27 -6.83 16 25 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.04 1.94 3.27 -2.38 -0.01 1.93 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.41 14.36 8.54 -92.71 -0.79 13.57 16 30 H 0.13 3.42 5.96 -2.39 -0.01 3.41 16 31 H 0.14 2.55 7.97 -2.39 -0.02 2.54 16 32 H 0.17 1.78 8.02 -2.91 -0.02 1.75 16 33 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 34 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.16 2.75 7.62 -2.91 -0.02 2.73 16 Total: -1.00 -78.85 301.11 3.51 -75.34 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.27 Total: 12.99 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 3.17 Total: -9.60 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.17 Total: -85.18 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: 0.57 Total: -41.31 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.67 Total: 47.77 kcal Total: -78.85 3.51 -75.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194720736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.178 kcal (2) G-P(sol) polarization free energy of solvation -78.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds