Wall clock time and date at job start Tue Mar 31 2020 01:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47412 * 2 1 4 4 C 1.50703 * 109.46965 * 119.99607 * 2 1 3 5 5 H 1.08000 * 120.00133 * 120.00031 * 4 2 1 6 6 C 1.37872 * 120.00380 * 300.00338 * 4 2 1 7 7 N 1.31517 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00517 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47078 * 59.99362 * 8 6 4 10 10 H 1.48501 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46720 * 299.99569 * 8 6 4 12 12 N 1.46495 * 109.47514 * 239.99513 * 2 1 3 13 13 C 1.34781 * 119.99725 * 85.00091 * 12 2 1 14 14 O 1.21593 * 119.99986 * 0.02562 * 13 12 2 15 15 N 1.34781 * 119.99997 * 180.02562 * 13 12 2 16 16 C 1.40129 * 119.99847 * 175.38278 * 15 13 12 17 17 C 1.38829 * 120.00522 * 35.10006 * 16 15 13 18 18 C 1.38186 * 120.07385 * 179.97438 * 17 16 15 19 19 C 1.38547 * 120.11298 * 0.03301 * 18 17 16 20 20 C 1.39275 * 119.94392 * 359.97438 * 19 18 17 21 21 C 1.38493 * 119.89582 * 359.70598 * 20 19 18 22 22 O 1.36512 * 108.64198 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.50230 * 342.70299 * 22 20 19 24 24 O 1.36603 * 131.44125 * 179.97438 * 19 18 17 25 25 H 1.09003 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47584 * 300.00271 * 1 2 3 27 27 H 1.08997 * 109.46723 * 60.00598 * 1 2 3 28 28 H 0.96998 * 120.00435 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00727 * 265.00348 * 12 2 1 30 30 H 0.97001 * 119.99687 * 355.38048 * 15 13 12 31 31 H 1.07999 * 119.96361 * 359.97438 * 17 16 15 32 32 H 1.08001 * 119.94234 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.01147 * 180.31832 * 21 20 19 34 34 H 1.09004 * 110.56665 * 268.58978 * 23 22 20 35 35 H 1.08995 * 110.57365 * 145.71472 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8267 -0.4197 5.2205 11 1 1.8278 -2.5197 4.0083 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5960 -0.6538 -3.4576 16 6 2.6384 0.0183 -4.6865 17 6 2.9411 1.3726 -4.7269 18 6 2.9838 2.0367 -5.9380 19 6 2.7242 1.3534 -7.1150 20 6 2.4201 -0.0052 -7.0775 21 6 2.3841 -0.6713 -5.8638 22 8 2.2072 -0.4401 -8.3539 23 6 1.9819 0.7495 -9.1332 24 8 2.7022 1.7695 -8.4159 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7093 1.1619 3.4843 29 1 2.2491 -1.6318 -1.1525 30 1 2.8897 -1.5765 -3.3990 31 1 3.1434 1.9077 -3.8109 32 1 3.2199 3.0902 -5.9670 33 1 2.1535 -1.7259 -5.8331 34 1 0.9186 0.9863 -9.1718 35 1 2.3858 0.6310 -10.1386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194734939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:52 Heat of formation + Delta-G solvation = -57.498008 kcal Electronic energy + Delta-G solvation = -20869.900547 eV Core-core repulsion = 17448.529899 eV Total energy + Delta-G solvation = -3421.370648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16815 -40.00194 -37.65349 -36.31676 -34.97539 -34.02249 -32.40091 -30.50490 -29.49697 -28.10082 -25.76397 -25.27672 -23.25356 -22.90899 -21.33072 -19.95494 -18.52089 -18.23737 -17.85165 -17.12588 -16.70447 -16.03080 -15.39400 -14.95875 -14.75650 -14.41083 -14.26704 -13.91046 -13.70302 -13.26181 -13.04321 -12.98255 -12.79065 -12.41630 -11.83980 -11.38364 -11.18203 -11.10353 -10.96991 -10.75271 -10.36361 -10.25985 -9.75816 -9.42802 -9.09199 -8.72510 -8.59735 -8.06094 -7.58980 -6.15576 -4.25195 1.17530 1.22826 2.56474 3.14112 3.23784 3.29428 3.30561 3.44076 3.50537 3.89896 4.29620 4.47439 4.53798 4.73472 4.86051 5.08838 5.11199 5.17154 5.29975 5.52757 5.71000 6.00151 6.10305 6.31847 6.47112 6.76183 6.80320 6.94426 7.07200 7.15901 7.18339 7.40252 7.58416 7.78572 7.94526 8.11669 8.67314 8.79187 9.16076 9.42923 10.90418 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051916 B = 0.003188 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.198543 B = 8781.789996 C = 8933.718068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.693 3.307 14 O -0.580 6.580 15 N -0.693 5.693 16 C 0.193 3.807 17 C -0.110 4.110 18 C -0.078 4.078 19 C 0.001 3.999 20 C 0.048 3.952 21 C -0.137 4.137 22 O -0.312 6.312 23 C 0.214 3.786 24 O -0.312 6.312 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.387 0.613 30 H 0.405 0.595 31 H 0.160 0.840 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -2.973 -18.318 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.394 3.606 14 O -0.458 6.458 15 N -0.341 5.341 16 C 0.096 3.904 17 C -0.131 4.131 18 C -0.097 4.097 19 C -0.044 4.044 20 C 0.003 3.997 21 C -0.158 4.158 22 O -0.228 6.228 23 C 0.102 3.898 24 O -0.228 6.228 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.219 0.781 30 H 0.240 0.760 31 H 0.177 0.823 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.584 -1.800 -18.263 18.532 hybrid contribution 0.354 -1.453 0.607 1.614 sum 2.938 -3.253 -17.655 18.191 Atomic orbital electron populations 1.22110 0.98485 0.99148 1.00995 1.18700 0.90888 0.93777 0.78748 0.93152 1.21167 1.32679 1.13360 0.90245 0.92085 1.24876 0.94774 0.94955 0.99035 1.69890 1.35691 1.22327 1.24094 0.86486 0.79164 0.79555 0.81750 1.20155 1.21105 1.20171 1.45881 1.68349 1.13376 1.09156 1.16138 0.78613 0.85513 0.80354 1.90874 1.56982 1.14028 1.83886 1.42797 1.68556 1.16492 1.06245 1.17005 0.97472 0.92059 0.83887 1.21260 0.99949 0.93712 0.98173 1.19995 1.01744 1.00253 0.87700 1.19735 1.07031 0.92381 0.85254 1.19285 1.03234 0.91698 0.85459 1.19566 1.07564 1.01182 0.87510 1.87324 1.88096 1.31089 1.16291 1.25549 0.97411 0.72543 0.94268 1.87355 1.73610 1.45424 1.16452 0.95491 0.89057 0.96536 0.92439 0.78061 0.76009 0.82278 0.84526 0.84624 0.90147 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.28 6.94 2.56 -69.08 -0.18 6.76 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 12 N -0.72 -14.26 5.07 -59.81 -0.30 -14.57 16 13 C 0.69 13.40 8.37 -86.91 -0.73 12.67 16 14 O -0.58 -13.32 13.44 5.28 0.07 -13.25 16 15 N -0.69 -10.09 5.35 -14.20 -0.08 -10.16 16 16 C 0.19 2.81 6.30 -83.64 -0.53 2.29 16 17 C -0.11 -1.68 8.69 -39.38 -0.34 -2.02 16 18 C -0.08 -1.05 10.05 -39.49 -0.40 -1.45 16 19 C 0.00 0.01 7.15 -39.08 -0.28 -0.27 16 20 C 0.05 0.65 7.15 -39.10 -0.28 0.37 16 21 C -0.14 -1.76 9.97 -39.28 -0.39 -2.16 16 22 O -0.31 -3.80 11.40 -45.73 -0.52 -4.32 16 23 C 0.21 1.97 8.89 101.05 0.90 2.87 16 24 O -0.31 -3.88 11.41 -46.03 -0.53 -4.40 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 29 H 0.39 6.50 8.56 -40.82 -0.35 6.15 16 30 H 0.40 4.43 8.84 -40.82 -0.36 4.07 16 31 H 0.16 2.71 6.21 -52.49 -0.33 2.39 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -31.25 303.27 -7.27 -38.53 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.82 Total: 8.89 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.27 Total: 3.31 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.25 Total: -48.53 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.98 Total: -21.97 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.25 -7.27 -38.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.969 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds