Wall clock time and date at job start Tue Mar 31 2020 01:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47412 * 2 1 4 4 C 1.50703 * 109.46965 * 119.99607 * 2 1 3 5 5 H 1.08000 * 120.00133 * 120.00031 * 4 2 1 6 6 C 1.37872 * 120.00380 * 300.00338 * 4 2 1 7 7 N 1.31517 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00517 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47078 * 59.99362 * 8 6 4 10 10 H 1.48501 * 109.47185 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46720 * 299.99569 * 8 6 4 12 12 N 1.46495 * 109.47514 * 239.99513 * 2 1 3 13 13 C 1.34781 * 119.99725 * 85.00091 * 12 2 1 14 14 O 1.21593 * 119.99986 * 0.02562 * 13 12 2 15 15 N 1.34781 * 119.99997 * 180.02562 * 13 12 2 16 16 C 1.40129 * 119.99847 * 175.38278 * 15 13 12 17 17 C 1.38829 * 120.00522 * 35.10006 * 16 15 13 18 18 C 1.38186 * 120.07385 * 179.97438 * 17 16 15 19 19 C 1.38547 * 120.11298 * 0.03301 * 18 17 16 20 20 C 1.39275 * 119.94392 * 359.97438 * 19 18 17 21 21 C 1.38493 * 119.89582 * 359.70598 * 20 19 18 22 22 O 1.36512 * 108.64198 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.50230 * 342.70299 * 22 20 19 24 24 O 1.36603 * 131.44125 * 179.97438 * 19 18 17 25 25 H 1.09003 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47584 * 300.00271 * 1 2 3 27 27 H 1.08997 * 109.46723 * 60.00598 * 1 2 3 28 28 H 0.96998 * 120.00435 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00727 * 265.00348 * 12 2 1 30 30 H 0.97001 * 119.99687 * 355.38048 * 15 13 12 31 31 H 1.07999 * 119.96361 * 359.97438 * 17 16 15 32 32 H 1.08001 * 119.94234 * 180.02562 * 18 17 16 33 33 H 1.07998 * 120.01147 * 180.31832 * 21 20 19 34 34 H 1.09004 * 110.56665 * 268.58978 * 23 22 20 35 35 H 1.08995 * 110.57365 * 145.71472 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.8073 -1.1188 4.0079 10 1 1.8267 -0.4197 5.2205 11 1 1.8278 -2.5197 4.0083 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5960 -0.6538 -3.4576 16 6 2.6384 0.0183 -4.6865 17 6 2.9411 1.3726 -4.7269 18 6 2.9838 2.0367 -5.9380 19 6 2.7242 1.3534 -7.1150 20 6 2.4201 -0.0052 -7.0775 21 6 2.3841 -0.6713 -5.8638 22 8 2.2072 -0.4401 -8.3539 23 6 1.9819 0.7495 -9.1332 24 8 2.7022 1.7695 -8.4159 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7093 1.1619 3.4843 29 1 2.2491 -1.6318 -1.1525 30 1 2.8897 -1.5765 -3.3990 31 1 3.1434 1.9077 -3.8109 32 1 3.2199 3.0902 -5.9670 33 1 2.1535 -1.7259 -5.8331 34 1 0.9186 0.9863 -9.1718 35 1 2.3858 0.6310 -10.1386 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194734939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:52 Heat of formation + Delta-G solvation = -79.635075 kcal Electronic energy + Delta-G solvation = -20870.860482 eV Core-core repulsion = 17448.529899 eV Total energy + Delta-G solvation = -3422.330583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.11569 -41.42440 -38.91689 -37.25155 -36.73787 -35.40667 -34.25273 -31.59482 -31.06356 -29.44922 -27.31201 -26.60144 -24.49711 -24.02684 -22.85585 -21.62394 -20.01154 -19.40569 -18.82288 -18.22875 -18.02781 -17.42910 -17.00786 -16.27854 -16.23220 -15.84533 -15.44377 -15.10054 -14.87599 -14.71974 -14.37072 -14.07696 -13.97229 -13.92063 -13.62150 -12.97914 -12.88648 -12.72823 -12.38700 -12.25060 -12.14569 -12.08308 -11.22132 -11.08902 -10.79600 -10.57497 -9.87990 -9.68777 -8.72833 -8.15408 -6.32618 0.07418 0.16976 1.44459 1.49201 1.50566 1.57790 1.97629 2.14084 2.43869 2.56575 2.64858 3.15413 3.43265 3.47800 3.84482 4.04902 4.07796 4.15654 4.30454 4.52643 4.64896 4.77656 4.95867 4.98367 5.04885 5.12148 5.21612 5.31488 5.43573 5.61440 5.65158 5.68042 5.86704 6.11290 6.12735 6.25405 6.75052 7.22720 7.36009 7.66883 8.90793 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.051916 B = 0.003188 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.198543 B = 8781.789996 C = 8933.718068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.712 5.712 13 C 0.694 3.306 14 O -0.621 6.621 15 N -0.671 5.671 16 C 0.176 3.824 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.002 4.002 20 C 0.044 3.956 21 C -0.125 4.125 22 O -0.318 6.318 23 C 0.204 3.796 24 O -0.323 6.323 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.012 0.988 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.425 0.575 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.101 0.899 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 -4.982 -19.717 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.364 5.364 13 C 0.395 3.605 14 O -0.501 6.501 15 N -0.321 5.321 16 C 0.079 3.921 17 C -0.147 4.147 18 C -0.100 4.100 19 C -0.047 4.047 20 C -0.001 4.001 21 C -0.146 4.146 22 O -0.234 6.234 23 C 0.094 3.906 24 O -0.239 6.239 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.263 0.737 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.180 0.820 34 H 0.118 0.882 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.031 -3.871 -19.727 20.330 hybrid contribution 0.221 -0.773 0.844 1.166 sum 3.253 -4.644 -18.883 19.716 Atomic orbital electron populations 1.21931 0.98439 0.99464 0.99577 1.18259 0.90853 0.91815 0.80544 0.97923 1.21517 1.32686 1.13701 0.90650 0.90657 1.25775 0.94877 0.95576 1.02258 1.70044 1.36935 1.23862 1.24698 0.85396 0.78629 0.78686 0.77600 1.19589 1.21352 1.18886 1.45440 1.68655 1.14046 1.08292 1.16197 0.78331 0.84991 0.81014 1.90859 1.58570 1.16011 1.84664 1.42372 1.67546 1.17129 1.05019 1.17092 0.98764 0.92021 0.84179 1.21117 1.01332 0.94332 0.97932 1.20055 1.01613 1.00985 0.87375 1.19849 1.06348 0.92690 0.85769 1.19439 1.02833 0.91645 0.86203 1.19675 1.06151 1.02232 0.86573 1.87315 1.88025 1.32424 1.15675 1.26133 0.98749 0.70812 0.94920 1.87342 1.74120 1.46632 1.15844 0.94101 0.91431 0.96939 0.92535 0.75983 0.73659 0.84763 0.83161 0.82000 0.88173 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.29 14.58 2.56 44.25 0.11 14.69 16 3 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 4 C -0.55 -28.12 8.73 25.60 0.22 -27.90 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.80 11.32 21.45 0.24 -51.55 16 8 Si 0.97 41.09 29.54 68.60 2.03 43.11 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 12 N -0.71 -28.20 5.07 -461.41 -2.34 -30.55 16 13 C 0.69 27.00 8.37 179.05 1.50 28.50 16 14 O -0.62 -29.57 13.44 -4.01 -0.05 -29.62 16 15 N -0.67 -18.89 5.35 -317.10 -1.70 -20.59 16 16 C 0.18 4.99 6.30 38.09 0.24 5.23 16 17 C -0.13 -3.92 8.69 22.40 0.19 -3.73 16 18 C -0.08 -2.19 10.05 22.33 0.22 -1.96 16 19 C 0.00 -0.04 7.15 22.59 0.16 0.12 16 20 C 0.04 1.09 7.15 22.58 0.16 1.25 16 21 C -0.13 -2.97 9.97 22.46 0.22 -2.75 16 22 O -0.32 -6.86 11.40 -76.19 -0.87 -7.73 16 23 C 0.20 3.14 8.89 113.37 1.01 4.14 16 24 O -0.32 -7.36 11.41 -77.27 -0.88 -8.24 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.40 13.01 8.56 -92.71 -0.79 12.22 16 30 H 0.42 8.40 8.84 -92.71 -0.82 7.58 16 31 H 0.13 4.86 6.21 -2.91 -0.02 4.85 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.70 303.27 1.13 -67.56 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.46 Total: 24.81 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.17 Total: 12.79 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.79 Total: -102.69 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.80 Total: -45.59 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -68.70 1.13 -67.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.071 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds