Wall clock time and date at job start Tue Mar 31 2020 01:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47288 * 240.00442 * 2 1 3 5 5 H 1.08003 * 119.99938 * 240.00269 * 4 2 1 6 6 C 1.37883 * 120.00331 * 59.99939 * 4 2 1 7 7 N 1.31519 * 119.99248 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00102 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47316 * 90.00226 * 8 6 4 10 10 H 1.48504 * 109.47130 * 209.99796 * 8 6 4 11 11 H 1.48493 * 109.47260 * 329.99786 * 8 6 4 12 12 N 1.46494 * 109.47247 * 120.00439 * 2 1 3 13 13 C 1.34781 * 119.99833 * 275.00075 * 12 2 1 14 14 O 1.21588 * 119.99964 * 0.02562 * 13 12 2 15 15 N 1.34781 * 119.99901 * 179.97438 * 13 12 2 16 16 C 1.40139 * 120.00066 * 184.62011 * 15 13 12 17 17 C 1.38834 * 120.00337 * 144.88053 * 16 15 13 18 18 C 1.38180 * 120.06555 * 179.77628 * 17 16 15 19 19 C 1.38547 * 120.11915 * 0.49639 * 18 17 16 20 20 C 1.39272 * 119.94335 * 359.50169 * 19 18 17 21 21 C 1.38498 * 119.89518 * 0.25166 * 20 19 18 22 22 O 1.36510 * 108.64448 * 180.25456 * 20 19 18 23 23 C 1.43982 * 105.49689 * 342.69691 * 22 20 19 24 24 O 1.36605 * 131.43898 * 179.81582 * 19 18 17 25 25 H 1.09001 * 109.47139 * 299.99768 * 1 2 3 26 26 H 1.09003 * 109.46656 * 59.99494 * 1 2 3 27 27 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99390 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00235 * 94.99843 * 12 2 1 30 30 H 0.97002 * 120.00213 * 4.61316 * 15 13 12 31 31 H 1.07996 * 119.96339 * 0.02562 * 17 16 15 32 32 H 1.07998 * 119.93662 * 180.28639 * 18 17 16 33 33 H 1.08006 * 120.01192 * 180.02562 * 21 20 19 34 34 H 1.08995 * 110.57427 * 268.58743 * 23 22 20 35 35 H 1.09002 * 110.57111 * 145.71660 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3215 -1.1201 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4867 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8574 1.1613 2.4119 15 7 2.5959 -0.6539 3.4577 16 6 2.6382 0.0182 4.6866 17 6 2.3771 -0.6702 5.8637 18 6 2.4230 -0.0098 7.0766 19 6 2.7195 1.3429 7.1210 20 6 2.9819 2.0360 5.9419 21 6 2.9407 1.3722 4.7271 22 8 3.2488 3.3385 6.2515 23 6 2.7470 3.5269 7.5878 24 8 2.8220 2.2120 8.1698 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7088 1.1615 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8895 -1.5766 3.3991 31 1 2.1419 -1.7237 5.8316 32 1 2.2241 -0.5483 7.9914 33 1 3.1443 1.9078 3.8115 34 1 1.7150 3.8767 7.5636 35 1 3.3766 4.2259 8.1384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194734955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:55 Heat of formation + Delta-G solvation = -57.366643 kcal Electronic energy + Delta-G solvation = -20975.634440 eV Core-core repulsion = 17554.269488 eV Total energy + Delta-G solvation = -3421.364951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11446 -39.97801 -37.67710 -36.24372 -34.98808 -33.97483 -32.40974 -30.44239 -29.51514 -28.08609 -25.77506 -25.27358 -23.22404 -22.85070 -21.29526 -19.91817 -18.54264 -18.30403 -17.79919 -17.18759 -16.43123 -16.04860 -15.47871 -14.90952 -14.71772 -14.43580 -14.13045 -13.90831 -13.75413 -13.20210 -12.99307 -12.87186 -12.81289 -12.42178 -11.83613 -11.49105 -11.18883 -11.11268 -10.94244 -10.75428 -10.34630 -10.25824 -9.72179 -9.46046 -9.07260 -8.63044 -8.56288 -8.05307 -7.61797 -6.15134 -4.24585 1.13419 1.28715 2.66429 3.14039 3.22825 3.30180 3.32414 3.45860 3.51492 3.89536 4.30191 4.53717 4.61833 4.79248 4.90882 5.03115 5.09746 5.17630 5.24900 5.57397 5.75883 6.07067 6.18402 6.22153 6.39708 6.76214 6.82075 6.94914 7.07572 7.17085 7.21134 7.41239 7.59168 7.79161 7.95358 8.12293 8.68255 8.80055 9.17294 9.43529 10.90893 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.003437 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.165872 B = 8145.455594 C = 8477.070239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.691 3.309 14 O -0.580 6.580 15 N -0.693 5.693 16 C 0.195 3.805 17 C -0.147 4.147 18 C -0.080 4.080 19 C 0.000 4.000 20 C 0.052 3.948 21 C -0.105 4.105 22 O -0.307 6.307 23 C 0.214 3.786 24 O -0.313 6.313 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.406 0.594 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -2.380 18.032 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.458 6.458 15 N -0.342 5.342 16 C 0.098 3.902 17 C -0.168 4.168 18 C -0.099 4.099 19 C -0.045 4.045 20 C 0.007 3.993 21 C -0.126 4.126 22 O -0.223 6.223 23 C 0.102 3.898 24 O -0.230 6.230 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.219 0.781 30 H 0.242 0.758 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.174 0.826 34 H 0.099 0.901 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.825 -1.022 17.878 18.129 hybrid contribution 0.431 -1.111 -0.801 1.436 sum 3.255 -2.134 17.077 17.515 Atomic orbital electron populations 1.22107 0.98472 0.99133 1.00988 1.18709 0.90908 0.93795 0.78797 0.93192 1.21201 1.32607 1.13315 0.90220 0.92033 1.24885 0.94806 0.94950 0.99058 1.69909 1.35744 1.22357 1.23958 0.86422 0.79134 0.79248 0.82130 1.20546 1.21048 1.19857 1.45872 1.68379 1.13355 1.09143 1.16190 0.78672 0.85519 0.80439 1.90888 1.56938 1.14085 1.83852 1.42816 1.68627 1.16364 1.06345 1.17011 0.97462 0.90908 0.84858 1.20619 1.05261 1.00760 0.90147 1.19702 1.01828 0.89902 0.98487 1.19722 1.06599 0.93271 0.84874 1.19548 1.01553 0.83822 0.94341 1.20226 1.02424 0.93856 0.96061 1.87375 1.77290 1.25475 1.32199 1.25571 1.00675 0.85601 0.78000 1.87327 1.90342 1.15729 1.29612 0.96557 0.89067 0.95480 0.92514 0.78068 0.75817 0.84309 0.84643 0.82558 0.90089 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.28 6.99 2.56 -69.08 -0.18 6.81 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 N -0.72 -14.39 5.07 -59.81 -0.30 -14.70 16 13 C 0.69 13.60 8.37 -86.91 -0.73 12.87 16 14 O -0.58 -13.76 13.44 5.29 0.07 -13.69 16 15 N -0.69 -10.09 5.35 -14.20 -0.08 -10.17 16 16 C 0.19 2.84 6.30 -83.63 -0.53 2.31 16 17 C -0.15 -1.67 9.96 -39.38 -0.39 -2.06 16 18 C -0.08 -0.91 10.05 -39.49 -0.40 -1.31 16 19 C 0.00 0.00 7.15 -39.08 -0.28 -0.28 16 20 C 0.05 0.81 7.15 -39.10 -0.28 0.53 16 21 C -0.10 -1.75 8.71 -39.28 -0.34 -2.09 16 22 O -0.31 -4.50 11.40 -45.72 -0.52 -5.02 16 23 C 0.21 2.23 8.89 101.05 0.90 3.13 16 24 O -0.31 -3.96 11.41 -46.03 -0.53 -4.49 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 6.51 8.56 -40.82 -0.35 6.16 16 30 H 0.41 4.32 8.84 -40.82 -0.36 3.96 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.16 3.02 6.22 -52.48 -0.33 2.70 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -32.15 303.27 -7.27 -39.42 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -3.82 Total: 8.63 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.27 Total: 4.09 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.25 Total: -48.82 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.98 Total: -23.20 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.15 -7.27 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.944 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds