Wall clock time and date at job start Tue Mar 31 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47288 * 240.00442 * 2 1 3 5 5 H 1.08003 * 119.99938 * 240.00269 * 4 2 1 6 6 C 1.37883 * 120.00331 * 59.99939 * 4 2 1 7 7 N 1.31519 * 119.99248 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00102 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47316 * 90.00226 * 8 6 4 10 10 H 1.48504 * 109.47130 * 209.99796 * 8 6 4 11 11 H 1.48493 * 109.47260 * 329.99786 * 8 6 4 12 12 N 1.46494 * 109.47247 * 120.00439 * 2 1 3 13 13 C 1.34781 * 119.99833 * 275.00075 * 12 2 1 14 14 O 1.21588 * 119.99964 * 0.02562 * 13 12 2 15 15 N 1.34781 * 119.99901 * 179.97438 * 13 12 2 16 16 C 1.40139 * 120.00066 * 184.62011 * 15 13 12 17 17 C 1.38834 * 120.00337 * 144.88053 * 16 15 13 18 18 C 1.38180 * 120.06555 * 179.77628 * 17 16 15 19 19 C 1.38547 * 120.11915 * 0.49639 * 18 17 16 20 20 C 1.39272 * 119.94335 * 359.50169 * 19 18 17 21 21 C 1.38498 * 119.89518 * 0.25166 * 20 19 18 22 22 O 1.36510 * 108.64448 * 180.25456 * 20 19 18 23 23 C 1.43982 * 105.49689 * 342.69691 * 22 20 19 24 24 O 1.36605 * 131.43898 * 179.81582 * 19 18 17 25 25 H 1.09001 * 109.47139 * 299.99768 * 1 2 3 26 26 H 1.09003 * 109.46656 * 59.99494 * 1 2 3 27 27 H 1.08995 * 109.47000 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99390 * 179.97438 * 7 6 4 29 29 H 0.97001 * 120.00235 * 94.99843 * 12 2 1 30 30 H 0.97002 * 120.00213 * 4.61316 * 15 13 12 31 31 H 1.07996 * 119.96339 * 0.02562 * 17 16 15 32 32 H 1.07998 * 119.93662 * 180.28639 * 18 17 16 33 33 H 1.08006 * 120.01192 * 180.02562 * 21 20 19 34 34 H 1.08995 * 110.57427 * 268.58743 * 23 22 20 35 35 H 1.09002 * 110.57111 * 145.71660 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3215 -1.1201 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4867 -0.1411 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8574 1.1613 2.4119 15 7 2.5959 -0.6539 3.4577 16 6 2.6382 0.0182 4.6866 17 6 2.3771 -0.6702 5.8637 18 6 2.4230 -0.0098 7.0766 19 6 2.7195 1.3429 7.1210 20 6 2.9819 2.0360 5.9419 21 6 2.9407 1.3722 4.7271 22 8 3.2488 3.3385 6.2515 23 6 2.7470 3.5269 7.5878 24 8 2.8220 2.2120 8.1698 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7088 1.1615 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8895 -1.5766 3.3991 31 1 2.1419 -1.7237 5.8316 32 1 2.2241 -0.5483 7.9914 33 1 3.1443 1.9078 3.8115 34 1 1.7150 3.8767 7.5636 35 1 3.3766 4.2259 8.1384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194734955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:54 Heat of formation + Delta-G solvation = -81.059331 kcal Electronic energy + Delta-G solvation = -20976.661832 eV Core-core repulsion = 17554.269488 eV Total energy + Delta-G solvation = -3422.392344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.11440 -41.41998 -38.92979 -37.25740 -36.76388 -35.37898 -34.27517 -31.53540 -31.09439 -29.46141 -27.32761 -26.69008 -24.45915 -23.98375 -22.85568 -21.61193 -19.98332 -19.55192 -18.81930 -18.31388 -17.80653 -17.51675 -16.98578 -16.43674 -16.19702 -15.70539 -15.46344 -15.23141 -14.95928 -14.61133 -14.37352 -14.01336 -13.92518 -13.79818 -13.66059 -12.99492 -12.90389 -12.72064 -12.52346 -12.30028 -12.18161 -12.10060 -11.14237 -11.09071 -10.83279 -10.59982 -9.86676 -9.65927 -8.73761 -8.16697 -6.34088 0.06852 0.22165 1.46236 1.47483 1.55530 1.59969 1.91907 2.15977 2.42933 2.53539 2.66325 3.14167 3.45227 3.50945 3.83587 4.05016 4.08992 4.15432 4.31929 4.56272 4.63794 4.76399 4.93839 5.08561 5.11465 5.14766 5.22148 5.26972 5.40904 5.59684 5.64916 5.66630 5.85245 6.09992 6.14509 6.25461 6.73874 7.23224 7.34782 7.66640 8.89803 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.003437 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.165872 B = 8145.455594 C = 8477.070239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.287 3.713 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.711 5.711 13 C 0.691 3.309 14 O -0.627 6.627 15 N -0.669 5.669 16 C 0.173 3.827 17 C -0.120 4.120 18 C -0.070 4.070 19 C -0.001 4.001 20 C 0.028 3.972 21 C -0.134 4.134 22 O -0.334 6.334 23 C 0.205 3.795 24 O -0.317 6.317 25 H 0.010 0.990 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.428 0.572 31 H 0.183 0.817 32 H 0.176 0.824 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -5.122 19.829 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.363 5.363 13 C 0.391 3.609 14 O -0.507 6.507 15 N -0.320 5.320 16 C 0.077 3.923 17 C -0.141 4.141 18 C -0.089 4.089 19 C -0.046 4.046 20 C -0.017 4.017 21 C -0.155 4.155 22 O -0.251 6.251 23 C 0.094 3.906 24 O -0.233 6.233 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.268 0.732 31 H 0.200 0.800 32 H 0.193 0.807 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.161 -3.827 19.737 20.352 hybrid contribution 0.347 -0.174 -1.210 1.270 sum 3.508 -4.001 18.527 19.276 Atomic orbital electron populations 1.21919 0.98336 0.99553 0.99480 1.18267 0.90958 0.91682 0.80721 0.98378 1.21539 1.32650 1.13652 0.90561 0.90547 1.25810 0.94892 0.95572 1.02360 1.70067 1.36993 1.23935 1.24626 0.85307 0.78991 0.77964 0.77831 1.19577 1.21451 1.18746 1.45414 1.68660 1.14044 1.08205 1.16301 0.78410 0.84931 0.81246 1.90876 1.58734 1.16383 1.84729 1.42382 1.67534 1.17011 1.05044 1.17239 0.98984 0.90432 0.85647 1.21034 1.02288 1.02368 0.88388 1.20230 0.99703 0.88961 0.99957 1.20046 1.06083 0.94217 0.84245 1.19670 1.02656 0.84538 0.94786 1.20082 1.04973 0.95233 0.95251 1.87331 1.77858 1.25528 1.34372 1.26083 1.02549 0.85358 0.76587 1.87307 1.90295 1.16348 1.29391 0.97100 0.91484 0.93860 0.92561 0.75855 0.73204 0.79972 0.80690 0.86642 0.88483 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.29 14.79 2.56 44.25 0.11 14.90 16 3 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -28.36 8.73 25.60 0.22 -28.13 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.45 11.32 21.45 0.24 -52.21 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 N -0.71 -28.65 5.07 -461.41 -2.34 -31.00 16 13 C 0.69 27.71 8.37 179.05 1.50 29.21 16 14 O -0.63 -31.51 13.44 -3.99 -0.05 -31.57 16 15 N -0.67 -18.84 5.35 -317.09 -1.70 -20.54 16 16 C 0.17 4.90 6.30 38.09 0.24 5.14 16 17 C -0.12 -2.30 9.96 22.40 0.22 -2.07 16 18 C -0.07 -1.33 10.05 22.33 0.22 -1.10 16 19 C 0.00 -0.03 7.15 22.59 0.16 0.14 16 20 C 0.03 0.90 7.15 22.58 0.16 1.06 16 21 C -0.13 -4.70 8.71 22.46 0.20 -4.50 16 22 O -0.33 -10.07 11.40 -76.17 -0.87 -10.94 16 23 C 0.20 4.04 8.89 113.37 1.01 5.05 16 24 O -0.32 -7.38 11.41 -77.29 -0.88 -8.26 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.41 13.10 8.56 -92.71 -0.79 12.31 16 30 H 0.43 8.01 8.84 -92.71 -0.82 7.19 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.12 4.95 6.22 -2.91 -0.02 4.94 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -74.37 303.27 1.13 -73.24 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.46 Total: 23.05 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.17 Total: 14.76 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.79 Total: -103.74 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.80 Total: -50.77 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -74.37 1.13 -73.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.817 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds