Wall clock time and date at job start Tue Mar 31 2020 00:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35006 * 119.99842 * 2 1 4 4 C 1.46147 * 119.99972 * 7.06918 * 3 2 1 5 5 O 1.21633 * 119.99913 * 5.97595 * 4 3 2 6 6 O 1.34913 * 119.99749 * 185.98046 * 4 3 2 7 7 C 1.42898 * 116.99800 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46987 * 179.97438 * 7 6 4 9 9 C 1.50705 * 109.46741 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00501 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99845 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99857 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00175 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47025 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47068 * 120.00011 * 13 11 9 16 16 H 1.48501 * 109.47114 * 240.00084 * 13 11 9 17 17 C 1.47073 * 120.00260 * 179.97438 * 2 1 3 18 18 C 1.39920 * 120.14166 * 115.27229 * 17 2 1 19 19 C 1.37776 * 119.84700 * 180.21370 * 18 17 2 20 20 C 1.38694 * 120.15097 * 359.51637 * 19 18 17 21 21 F 1.35099 * 119.85668 * 180.27966 * 20 19 18 22 22 C 1.38695 * 120.29181 * 0.25898 * 20 19 18 23 23 C 1.37783 * 120.14561 * 359.97227 * 22 20 19 24 24 H 1.09000 * 109.47331 * 275.50330 * 1 2 3 25 25 H 1.08998 * 109.47013 * 35.50863 * 1 2 3 26 26 H 1.09006 * 109.46877 * 155.50782 * 1 2 3 27 27 H 1.07998 * 119.99478 * 187.06690 * 3 2 1 28 28 H 1.08994 * 109.47690 * 300.00284 * 7 6 4 29 29 H 1.09001 * 109.46772 * 60.00444 * 7 6 4 30 30 H 1.08993 * 109.47559 * 299.99988 * 8 7 6 31 31 H 1.09001 * 109.46824 * 60.00694 * 8 7 6 32 32 H 0.97001 * 120.00048 * 179.97438 * 12 11 9 33 33 H 1.07993 * 120.07599 * 0.02562 * 18 17 2 34 34 H 1.08003 * 119.92738 * 179.80171 * 19 18 17 35 35 H 1.07997 * 119.92372 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.07358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1692 0.0000 4 6 1.4596 2.4300 0.1558 5 8 0.2668 2.4221 0.3939 6 8 2.1157 3.6027 0.0353 7 6 1.3468 4.7960 0.1992 8 6 2.2554 6.0154 0.0295 9 6 1.4446 7.2738 0.2029 10 1 0.3871 7.2104 0.4127 11 6 2.0527 8.5064 0.0927 12 7 3.3402 8.5837 -0.1643 13 14 1.0480 10.0663 0.3084 14 1 -0.3662 9.7095 0.5875 15 1 1.5936 10.8535 1.4431 16 1 1.1177 10.8758 -0.9346 17 6 2.2424 -1.2737 0.0006 18 6 3.0411 -1.6243 -1.0935 19 6 3.7239 -2.8209 -1.0884 20 6 3.6289 -3.6726 0.0021 21 9 4.3055 -4.8420 0.0031 22 6 2.8427 -3.3289 1.0917 23 6 2.1509 -2.1374 1.0975 24 1 -0.3634 0.0986 1.0229 25 1 -0.3633 0.8365 -0.5969 26 1 -0.3633 -0.9353 -0.4261 27 1 3.2558 1.1727 -0.1151 28 1 0.5560 4.8246 -0.5503 29 1 0.9041 4.8091 1.1952 30 1 3.0458 5.9867 0.7793 31 1 2.6984 6.0025 -0.9663 32 1 3.7680 9.4508 -0.2422 33 1 3.1198 -0.9599 -1.9412 34 1 4.3383 -3.0943 -1.9336 35 1 2.7733 -3.9964 1.9379 36 1 1.5393 -1.8708 1.9468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195346743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:53 Heat of formation + Delta-G solvation = -104.774061 kcal Electronic energy + Delta-G solvation = -19765.415837 eV Core-core repulsion = 16322.075184 eV Total energy + Delta-G solvation = -3443.340653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.25257 -40.18971 -39.37152 -36.64192 -34.73849 -33.32902 -31.61815 -30.47600 -29.83332 -28.11916 -25.17136 -23.84001 -23.33122 -21.77347 -20.75797 -19.19656 -18.01678 -17.49553 -16.64602 -16.27748 -15.96910 -15.95622 -15.78575 -15.42079 -14.64744 -14.47330 -14.03420 -13.85069 -13.71248 -13.44541 -12.98785 -12.70818 -12.46552 -12.33897 -12.04586 -11.85090 -11.45919 -11.22321 -11.02255 -10.75389 -10.65411 -10.03540 -9.69270 -9.57171 -9.54990 -9.48923 -9.27636 -8.79735 -8.44321 -6.10254 -4.14362 0.46745 0.83241 1.13868 3.06407 3.14624 3.27457 3.29286 3.35503 3.41145 3.85587 4.30644 4.35063 4.42585 4.44805 4.77134 4.86490 4.96950 5.26379 5.27409 5.37345 5.49127 5.55873 5.62967 5.70572 5.73808 5.90546 5.99140 6.08349 6.10779 6.18474 6.30578 6.45408 6.65992 7.02210 7.56785 7.63239 7.87270 8.20397 8.29151 8.91571 9.50022 11.01381 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.002525 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.280496 B =11087.165074 C =11488.573537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.002 3.998 3 C -0.177 4.177 4 C 0.485 3.515 5 O -0.513 6.513 6 O -0.347 6.347 7 C 0.073 3.927 8 C 0.024 3.976 9 C -0.525 4.525 10 H 0.060 0.940 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.069 4.069 18 C -0.073 4.073 19 C -0.151 4.151 20 C 0.100 3.900 21 F -0.140 7.140 22 C -0.152 4.152 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -24.760 -0.203 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 C -0.196 4.196 4 C 0.332 3.668 5 O -0.406 6.406 6 O -0.263 6.263 7 C 0.000 4.000 8 C -0.013 4.013 9 C -0.563 4.563 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.529 5.529 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.069 4.069 18 C -0.091 4.091 19 C -0.170 4.170 20 C 0.080 3.920 21 F -0.118 7.118 22 C -0.171 4.171 23 C -0.088 4.088 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.816 -24.620 -0.162 24.634 hybrid contribution -0.294 0.768 0.129 0.832 sum -1.111 -23.852 -0.033 23.878 Atomic orbital electron populations 1.21179 0.89580 1.02997 1.04019 1.21056 0.96359 0.90658 0.91796 1.22175 1.00952 0.89048 1.07442 1.21145 0.85670 0.85587 0.74414 1.90813 1.16188 1.88572 1.45020 1.86228 1.43891 1.15058 1.81112 1.23229 0.95353 0.80925 1.00512 1.19176 0.94981 0.88404 0.98709 1.21031 0.95392 0.90214 1.49673 0.92209 1.24994 0.95013 0.99306 0.94925 1.69987 1.09614 1.24902 1.48401 0.86420 0.80299 0.82811 0.77813 1.19595 1.20832 1.20839 1.18944 0.98326 0.94378 0.95244 1.21266 0.94219 0.95684 0.97890 1.21101 1.02526 0.94904 0.98469 1.17915 0.95004 0.82964 0.96079 1.91509 1.78047 1.45489 1.96790 1.21078 0.98954 0.98589 0.98445 1.21124 0.97858 0.92131 0.97658 0.89787 0.88706 0.92185 0.84170 0.92578 0.92582 0.95374 0.95376 0.92773 0.84274 0.84309 0.84349 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.47 36.01 0.30 -1.01 16 2 C 0.00 0.02 5.48 -102.19 -0.56 -0.54 16 3 C -0.18 -2.28 9.75 -37.56 -0.37 -2.65 16 4 C 0.48 8.36 7.73 33.90 0.26 8.62 16 5 O -0.51 -9.55 13.09 -19.37 -0.25 -9.80 16 6 O -0.35 -7.00 10.12 -41.08 -0.42 -7.42 16 7 C 0.07 1.63 5.31 37.16 0.20 1.83 16 8 C 0.02 0.64 5.34 -27.88 -0.15 0.49 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 10 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 13 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.07 -0.63 5.29 -105.06 -0.56 -1.18 16 18 C -0.07 -0.59 9.72 -39.12 -0.38 -0.97 16 19 C -0.15 -1.19 10.01 -39.58 -0.40 -1.58 16 20 C 0.10 0.86 7.31 -39.24 -0.29 0.57 16 21 F -0.14 -1.31 17.26 2.25 0.04 -1.28 16 22 C -0.15 -1.17 10.01 -39.58 -0.40 -1.57 16 23 C -0.07 -0.56 9.78 -39.12 -0.38 -0.94 16 24 H 0.08 0.91 8.06 -51.93 -0.42 0.50 16 25 H 0.09 1.23 6.16 -51.93 -0.32 0.91 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -31.16 324.56 -7.65 -38.81 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.50 Total: -3.39 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.12 Total: -12.47 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.75 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.67 Total: -17.22 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.16 -7.65 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195346743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.968 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds