Wall clock time and date at job start Tue Mar 31 2020 00:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35006 * 119.99842 * 2 1 4 4 C 1.46147 * 119.99972 * 7.06918 * 3 2 1 5 5 O 1.21633 * 119.99913 * 5.97595 * 4 3 2 6 6 O 1.34913 * 119.99749 * 185.98046 * 4 3 2 7 7 C 1.42898 * 116.99800 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46987 * 179.97438 * 7 6 4 9 9 C 1.50705 * 109.46741 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00501 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99845 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99857 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00175 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47025 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47068 * 120.00011 * 13 11 9 16 16 H 1.48501 * 109.47114 * 240.00084 * 13 11 9 17 17 C 1.47073 * 120.00260 * 179.97438 * 2 1 3 18 18 C 1.39920 * 120.14166 * 115.27229 * 17 2 1 19 19 C 1.37776 * 119.84700 * 180.21370 * 18 17 2 20 20 C 1.38694 * 120.15097 * 359.51637 * 19 18 17 21 21 F 1.35099 * 119.85668 * 180.27966 * 20 19 18 22 22 C 1.38695 * 120.29181 * 0.25898 * 20 19 18 23 23 C 1.37783 * 120.14561 * 359.97227 * 22 20 19 24 24 H 1.09000 * 109.47331 * 275.50330 * 1 2 3 25 25 H 1.08998 * 109.47013 * 35.50863 * 1 2 3 26 26 H 1.09006 * 109.46877 * 155.50782 * 1 2 3 27 27 H 1.07998 * 119.99478 * 187.06690 * 3 2 1 28 28 H 1.08994 * 109.47690 * 300.00284 * 7 6 4 29 29 H 1.09001 * 109.46772 * 60.00444 * 7 6 4 30 30 H 1.08993 * 109.47559 * 299.99988 * 8 7 6 31 31 H 1.09001 * 109.46824 * 60.00694 * 8 7 6 32 32 H 0.97001 * 120.00048 * 179.97438 * 12 11 9 33 33 H 1.07993 * 120.07599 * 0.02562 * 18 17 2 34 34 H 1.08003 * 119.92738 * 179.80171 * 19 18 17 35 35 H 1.07997 * 119.92372 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.07358 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1820 1.1692 0.0000 4 6 1.4596 2.4300 0.1558 5 8 0.2668 2.4221 0.3939 6 8 2.1157 3.6027 0.0353 7 6 1.3468 4.7960 0.1992 8 6 2.2554 6.0154 0.0295 9 6 1.4446 7.2738 0.2029 10 1 0.3871 7.2104 0.4127 11 6 2.0527 8.5064 0.0927 12 7 3.3402 8.5837 -0.1643 13 14 1.0480 10.0663 0.3084 14 1 -0.3662 9.7095 0.5875 15 1 1.5936 10.8535 1.4431 16 1 1.1177 10.8758 -0.9346 17 6 2.2424 -1.2737 0.0006 18 6 3.0411 -1.6243 -1.0935 19 6 3.7239 -2.8209 -1.0884 20 6 3.6289 -3.6726 0.0021 21 9 4.3055 -4.8420 0.0031 22 6 2.8427 -3.3289 1.0917 23 6 2.1509 -2.1374 1.0975 24 1 -0.3634 0.0986 1.0229 25 1 -0.3633 0.8365 -0.5969 26 1 -0.3633 -0.9353 -0.4261 27 1 3.2558 1.1727 -0.1151 28 1 0.5560 4.8246 -0.5503 29 1 0.9041 4.8091 1.1952 30 1 3.0458 5.9867 0.7793 31 1 2.6984 6.0025 -0.9663 32 1 3.7680 9.4508 -0.2422 33 1 3.1198 -0.9599 -1.9412 34 1 4.3383 -3.0943 -1.9336 35 1 2.7733 -3.9964 1.9379 36 1 1.5393 -1.8708 1.9468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195346743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:52 Heat of formation + Delta-G solvation = -120.075780 kcal Electronic energy + Delta-G solvation = -19766.079370 eV Core-core repulsion = 16322.075184 eV Total energy + Delta-G solvation = -3444.004185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.93098 -41.54426 -40.15107 -38.07354 -35.76029 -35.43213 -32.39666 -32.21321 -30.69751 -29.19425 -27.03899 -24.87565 -23.94371 -23.22270 -22.39019 -20.25090 -18.99886 -18.66988 -18.19639 -17.60567 -17.29723 -16.93976 -16.61161 -16.58879 -16.40567 -15.33911 -15.16420 -14.67221 -14.56805 -14.45085 -14.37215 -14.31139 -13.80849 -13.25356 -13.11808 -13.02240 -12.90414 -12.72218 -12.57201 -12.52787 -12.05639 -11.76354 -11.46083 -11.40912 -11.09074 -10.62563 -10.48457 -10.15286 -9.53762 -8.27399 -6.40572 -0.34555 0.22060 0.24203 1.41044 1.41724 1.55378 1.85813 1.87856 2.40349 2.51562 3.06968 3.22866 3.44143 3.76084 3.82213 3.93623 4.08238 4.23808 4.24316 4.27613 4.34061 4.50798 4.71022 4.74115 4.84691 4.93331 4.98206 5.08016 5.11029 5.20986 5.23921 5.38701 5.41309 5.46439 5.62065 5.76261 5.82750 6.06823 6.72462 6.80641 7.29321 8.85637 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.002525 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.280496 B =11087.165074 C =11488.573537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.041 3.959 3 C -0.202 4.202 4 C 0.482 3.518 5 O -0.532 6.532 6 O -0.361 6.361 7 C 0.091 3.909 8 C 0.030 3.970 9 C -0.549 4.549 10 H 0.065 0.935 11 C 0.004 3.996 12 N -0.928 5.928 13 Si 0.975 3.025 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.085 4.085 18 C -0.072 4.072 19 C -0.152 4.152 20 C 0.088 3.912 21 F -0.146 7.146 22 C -0.151 4.151 23 C -0.068 4.068 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.155 0.845 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.268 0.732 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -25.905 0.024 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 C -0.220 4.220 4 C 0.331 3.669 5 O -0.425 6.425 6 O -0.278 6.278 7 C 0.017 3.983 8 C -0.007 4.007 9 C -0.586 4.586 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.567 5.567 13 Si 0.798 3.202 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.085 4.085 18 C -0.090 4.090 19 C -0.171 4.171 20 C 0.069 3.931 21 F -0.125 7.125 22 C -0.170 4.170 23 C -0.086 4.086 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.173 0.827 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.175 0.825 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.573 -25.793 0.064 25.841 hybrid contribution -0.049 0.929 0.046 0.932 sum -1.622 -24.864 0.110 24.917 Atomic orbital electron populations 1.21204 0.89558 1.03431 1.03869 1.21206 0.96411 0.90766 0.87594 1.22076 1.01484 0.87396 1.11090 1.21852 0.85760 0.85615 0.73655 1.90804 1.16976 1.88595 1.46163 1.86205 1.44152 1.15461 1.81943 1.22713 0.94237 0.80914 1.00457 1.18996 0.94881 0.90327 0.96529 1.21415 0.95891 0.91294 1.50027 0.91671 1.25992 0.96184 1.03072 0.94197 1.70107 1.11438 1.26152 1.49041 0.85255 0.78852 0.78001 0.78068 1.18571 1.20033 1.20022 1.18909 0.99313 0.93831 0.96446 1.21397 0.93667 0.95971 0.97991 1.21288 1.02422 0.94532 0.98848 1.18172 0.95244 0.82921 0.96728 1.91496 1.78245 1.45891 1.96855 1.21285 0.98257 0.98664 0.98763 1.21283 0.97786 0.91819 0.97665 0.89553 0.90879 0.89609 0.82727 0.92473 0.92560 0.97655 0.97603 0.92328 0.83165 0.82696 0.82493 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.47 71.24 0.60 -1.89 16 2 C 0.04 0.82 5.48 -18.29 -0.10 0.72 16 3 C -0.20 -5.04 9.75 23.58 0.23 -4.81 16 4 C 0.48 16.72 7.73 69.87 0.54 17.26 16 5 O -0.53 -19.87 13.09 19.40 0.25 -19.62 16 6 O -0.36 -14.92 10.12 -58.28 -0.59 -15.51 16 7 C 0.09 4.16 5.31 71.98 0.38 4.54 16 8 C 0.03 1.63 5.34 29.85 0.16 1.79 16 9 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 11 C 0.00 0.25 5.46 84.65 0.46 0.71 16 12 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 13 Si 0.97 43.85 29.54 68.60 2.03 45.87 16 14 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C -0.08 -1.35 5.29 -20.15 -0.11 -1.46 16 18 C -0.07 -1.02 9.72 22.57 0.22 -0.80 16 19 C -0.15 -2.05 10.01 22.27 0.22 -1.83 16 20 C 0.09 1.34 7.31 22.49 0.16 1.50 16 21 F -0.15 -2.50 17.26 44.97 0.78 -1.72 16 22 C -0.15 -1.95 10.01 22.27 0.22 -1.73 16 23 C -0.07 -0.91 9.78 22.57 0.22 -0.69 16 24 H 0.09 1.75 8.06 -2.39 -0.02 1.73 16 25 H 0.07 1.85 6.16 -2.39 -0.01 1.84 16 26 H 0.09 1.28 8.08 -2.38 -0.02 1.26 16 27 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.06 2.57 8.13 -2.39 -0.02 2.56 16 29 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -67.30 324.56 7.29 -60.02 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.08 Total: 4.64 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.45 Total: -17.91 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.77 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.34 Total: -35.13 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.30 7.29 -60.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195346743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.057 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds