Wall clock time and date at job start Tue Mar 31 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21258 * 119.99845 * 2 1 4 4 C 1.47183 * 120.00196 * 180.02562 * 2 1 3 5 5 C 1.39775 * 120.13876 * 256.30149 * 4 2 1 6 6 C 1.38560 * 119.74914 * 180.02562 * 5 4 2 7 7 N 1.39715 * 119.99011 * 180.02562 * 6 5 4 8 8 C 1.46490 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46505 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47550 * 89.99550 * 9 7 6 11 11 H 1.08003 * 119.99827 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00349 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99590 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00336 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47416 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47315 * 120.00251 * 14 12 10 17 17 H 1.48507 * 109.47447 * 240.00403 * 14 12 10 18 18 C 1.39066 * 120.01972 * 0.02562 * 6 5 4 19 19 C 1.38249 * 120.27491 * 359.97438 * 18 6 5 20 20 C 1.37954 * 120.25376 * 0.25771 * 19 18 6 21 21 N 1.48015 * 120.00753 * 179.71977 * 20 19 18 22 22 O 1.21797 * 120.00509 * 5.97120 * 21 20 19 23 23 O 1.21801 * 120.00095 * 185.97330 * 21 20 19 24 24 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46815 * 300.00051 * 1 2 3 26 26 H 1.08994 * 109.47264 * 59.99835 * 1 2 3 27 27 H 1.08003 * 120.12450 * 0.03838 * 5 4 2 28 28 H 1.09001 * 109.47406 * 90.00678 * 8 7 6 29 29 H 1.09001 * 109.47504 * 210.00269 * 8 7 6 30 30 H 1.08996 * 109.47398 * 330.00562 * 8 7 6 31 31 H 1.09001 * 109.46972 * 209.99495 * 9 7 6 32 32 H 1.09003 * 109.47158 * 329.99312 * 9 7 6 33 33 H 0.97003 * 119.99425 * 180.02562 * 13 12 10 34 34 H 1.08000 * 119.86486 * 179.97438 * 18 6 5 35 35 H 1.07995 * 119.87151 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 2.8418 -1.7398 1.1736 6 6 3.5331 -2.9405 1.1638 7 7 4.1332 -3.4105 2.3347 8 6 4.0309 -2.6341 3.5728 9 6 4.8647 -4.6798 2.3244 10 6 6.3106 -4.4237 1.9859 11 1 6.6506 -3.4162 1.7968 12 6 7.1994 -5.4755 1.9174 13 7 6.7852 -6.7024 2.1471 14 14 8.9916 -5.1580 1.4971 15 1 9.2001 -3.7032 1.2846 16 1 9.8520 -5.6229 2.6146 17 1 9.3477 -5.8956 0.2583 18 6 3.6299 -3.6780 -0.0112 19 6 3.0380 -3.2188 -1.1731 20 6 2.3510 -2.0225 -1.1773 21 7 1.7246 -1.5330 -2.4258 22 8 1.7212 -2.2347 -3.4213 23 8 1.2126 -0.4283 -2.4578 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.7657 -1.1655 2.0852 28 1 3.1411 -2.9417 4.1222 29 1 4.9150 -2.8094 4.1857 30 1 3.9604 -1.5735 3.3317 31 1 4.7987 -5.1452 3.3079 32 1 4.4290 -5.3442 1.5782 33 1 7.4106 -7.4423 2.0994 34 1 4.1697 -4.6134 -0.0161 35 1 3.1176 -3.7966 -2.0820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228256979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:15 Heat of formation + Delta-G solvation = -8.738090 kcal Electronic energy + Delta-G solvation = -21379.435588 eV Core-core repulsion = 17960.179328 eV Total energy + Delta-G solvation = -3419.256259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90351 -39.95486 -38.75152 -36.25622 -36.12694 -33.07368 -31.88734 -30.76518 -29.77377 -28.27302 -26.70811 -24.96185 -23.50187 -22.68210 -21.40108 -19.92930 -18.52071 -18.28609 -17.22840 -17.00632 -16.74315 -15.94623 -15.63593 -15.20503 -14.89681 -14.40143 -14.31475 -14.07471 -13.36928 -13.10291 -12.63372 -12.47356 -12.44535 -12.12572 -11.95675 -11.87583 -11.32209 -11.25403 -11.10960 -10.86767 -10.85800 -10.77540 -10.40902 -10.32196 -9.82399 -9.57854 -9.14674 -8.77670 -7.25091 -6.37107 -4.48407 0.22941 1.12451 1.75125 1.80968 1.88502 3.10049 3.19718 3.22418 3.40823 3.59446 3.85251 4.17542 4.60324 4.89484 4.94676 5.08678 5.13216 5.22828 5.34540 5.38165 5.41362 5.60420 5.65872 5.78432 5.90466 5.94605 6.06054 6.20387 6.47781 6.59853 6.79379 6.89340 7.32958 7.43014 7.62888 7.71793 7.78200 7.98811 8.58911 9.20842 10.67415 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.004791 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.555064 B = 5842.359815 C = 6442.617096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.412 3.588 3 O -0.441 6.441 4 C -0.038 4.038 5 C -0.187 4.187 6 C 0.284 3.716 7 N -0.581 5.581 8 C 0.082 3.918 9 C 0.238 3.762 10 C -0.545 4.545 11 H 0.063 0.937 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.176 4.176 19 C -0.005 4.005 20 C -0.112 4.112 21 N 0.051 4.949 22 O -0.178 6.178 23 O -0.200 6.200 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.142 0.858 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.268 0.732 34 H 0.160 0.840 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 6.073 0.416 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.287 3.713 3 O -0.313 6.313 4 C -0.042 4.042 5 C -0.211 4.211 6 C 0.169 3.831 7 N -0.279 5.279 8 C -0.061 4.061 9 C 0.120 3.880 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.199 4.199 19 C -0.026 4.026 20 C -0.200 4.200 21 N 0.560 4.440 22 O -0.391 6.391 23 O -0.405 6.405 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.160 0.840 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.177 0.823 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.195 6.141 1.272 11.130 hybrid contribution 0.990 -0.008 -0.504 1.111 sum -8.205 6.132 0.768 10.272 Atomic orbital electron populations 1.22179 0.92497 1.04656 1.05272 1.22430 0.92127 0.86952 0.69790 1.90574 1.72106 1.33428 1.35234 1.19969 0.96577 0.95513 0.92137 1.20548 1.05061 0.97965 0.97532 1.18135 0.86926 0.90383 0.87697 1.47675 1.50725 1.23829 1.05707 1.21785 1.02319 0.95474 0.86531 1.19626 0.90994 0.78341 0.99089 1.21482 0.93068 0.94262 1.49522 0.91883 1.24946 0.99415 0.94788 0.94532 1.69919 1.35747 0.98905 1.48111 0.86403 0.83934 0.78667 0.78312 1.19619 1.20699 1.20556 1.21054 1.05253 1.03506 0.90116 1.20623 0.90924 0.91499 0.99574 1.20523 1.14548 1.01209 0.83743 1.43477 0.98159 0.99798 1.02541 1.94488 1.63845 1.55708 1.25065 1.94456 1.47888 1.07533 1.90611 0.90583 0.88751 0.87438 0.84025 0.92978 0.90050 0.91882 0.93975 0.93877 0.92268 0.82264 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 9.48 36.01 0.34 -1.71 16 2 C 0.41 6.12 4.53 -30.68 -0.14 5.98 16 3 O -0.44 -7.80 17.86 5.58 0.10 -7.70 16 4 C -0.04 -0.59 5.46 -105.09 -0.57 -1.17 16 5 C -0.19 -2.79 8.95 -38.89 -0.35 -3.13 16 6 C 0.28 4.71 6.55 -83.84 -0.55 4.16 16 7 N -0.58 -10.10 2.99 -181.05 -0.54 -10.64 16 8 C 0.08 1.13 10.19 59.84 0.61 1.74 16 9 C 0.24 5.05 4.91 -5.19 -0.03 5.02 16 10 C -0.54 -13.16 9.39 -34.44 -0.32 -13.48 16 11 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 12 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -23.17 13.29 55.43 0.74 -22.44 16 14 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.18 -2.92 9.20 -39.27 -0.36 -3.28 16 19 C -0.01 -0.08 9.54 -39.68 -0.38 -0.46 16 20 C -0.11 -1.83 6.87 -79.45 -0.55 -2.38 16 21 N 0.05 0.88 4.45 34.20 0.15 1.03 16 22 O -0.18 -3.11 18.46 -29.46 -0.54 -3.66 16 23 O -0.20 -3.49 15.12 -29.48 -0.45 -3.93 16 24 H 0.08 0.75 7.99 -51.93 -0.41 0.34 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.11 1.17 7.45 -51.93 -0.39 0.78 16 27 H 0.14 1.80 6.13 -52.48 -0.32 1.48 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.06 0.76 6.19 -51.93 -0.32 0.43 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.04 0.95 6.19 -51.93 -0.32 0.63 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.16 2.80 6.12 -52.49 -0.32 2.48 16 35 H 0.15 2.06 7.61 -52.49 -0.40 1.66 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -28.09 309.78 -7.00 -35.09 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.72 Total: 0.01 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.39 Total: -7.14 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.35 Total: -32.05 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.89 Total: -15.29 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.09 -7.00 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228256979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.354 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds