Wall clock time and date at job start Tue Mar 31 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21258 * 119.99845 * 2 1 4 4 C 1.47183 * 120.00196 * 180.02562 * 2 1 3 5 5 C 1.39775 * 120.13876 * 256.30149 * 4 2 1 6 6 C 1.38560 * 119.74914 * 180.02562 * 5 4 2 7 7 N 1.39715 * 119.99011 * 180.02562 * 6 5 4 8 8 C 1.46490 * 120.00111 * 0.02562 * 7 6 5 9 9 C 1.46505 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47550 * 89.99550 * 9 7 6 11 11 H 1.08003 * 119.99827 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00349 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99590 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00336 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47416 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47315 * 120.00251 * 14 12 10 17 17 H 1.48507 * 109.47447 * 240.00403 * 14 12 10 18 18 C 1.39066 * 120.01972 * 0.02562 * 6 5 4 19 19 C 1.38249 * 120.27491 * 359.97438 * 18 6 5 20 20 C 1.37954 * 120.25376 * 0.25771 * 19 18 6 21 21 N 1.48015 * 120.00753 * 179.71977 * 20 19 18 22 22 O 1.21797 * 120.00509 * 5.97120 * 21 20 19 23 23 O 1.21801 * 120.00095 * 185.97330 * 21 20 19 24 24 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46815 * 300.00051 * 1 2 3 26 26 H 1.08994 * 109.47264 * 59.99835 * 1 2 3 27 27 H 1.08003 * 120.12450 * 0.03838 * 5 4 2 28 28 H 1.09001 * 109.47406 * 90.00678 * 8 7 6 29 29 H 1.09001 * 109.47504 * 210.00269 * 8 7 6 30 30 H 1.08996 * 109.47398 * 330.00562 * 8 7 6 31 31 H 1.09001 * 109.46972 * 209.99495 * 9 7 6 32 32 H 1.09003 * 109.47158 * 329.99312 * 9 7 6 33 33 H 0.97003 * 119.99425 * 180.02562 * 13 12 10 34 34 H 1.08000 * 119.86486 * 179.97438 * 18 6 5 35 35 H 1.07995 * 119.87151 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 2.8418 -1.7398 1.1736 6 6 3.5331 -2.9405 1.1638 7 7 4.1332 -3.4105 2.3347 8 6 4.0309 -2.6341 3.5728 9 6 4.8647 -4.6798 2.3244 10 6 6.3106 -4.4237 1.9859 11 1 6.6506 -3.4162 1.7968 12 6 7.1994 -5.4755 1.9174 13 7 6.7852 -6.7024 2.1471 14 14 8.9916 -5.1580 1.4971 15 1 9.2001 -3.7032 1.2846 16 1 9.8520 -5.6229 2.6146 17 1 9.3477 -5.8956 0.2583 18 6 3.6299 -3.6780 -0.0112 19 6 3.0380 -3.2188 -1.1731 20 6 2.3510 -2.0225 -1.1773 21 7 1.7246 -1.5330 -2.4258 22 8 1.7212 -2.2347 -3.4213 23 8 1.2126 -0.4283 -2.4578 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.7657 -1.1655 2.0852 28 1 3.1411 -2.9417 4.1222 29 1 4.9150 -2.8094 4.1857 30 1 3.9604 -1.5735 3.3317 31 1 4.7987 -5.1452 3.3079 32 1 4.4290 -5.3442 1.5782 33 1 7.4106 -7.4423 2.0994 34 1 4.1697 -4.6134 -0.0161 35 1 3.1176 -3.7966 -2.0820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228256979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:15 Heat of formation + Delta-G solvation = -22.837585 kcal Electronic energy + Delta-G solvation = -21380.046988 eV Core-core repulsion = 17960.179328 eV Total energy + Delta-G solvation = -3419.867659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.23853 -41.21626 -40.01202 -37.61671 -37.48808 -34.89323 -33.10846 -32.12013 -30.82974 -29.78068 -28.01501 -26.47683 -24.77514 -24.19530 -22.67543 -21.21703 -19.82182 -19.61445 -18.71254 -18.57162 -18.20000 -17.27633 -16.88460 -16.53191 -16.33975 -15.73226 -15.55965 -15.33098 -14.72852 -14.40765 -14.15033 -13.75347 -13.61979 -13.25044 -13.18448 -13.10307 -12.94410 -12.75002 -12.60204 -12.39086 -12.22155 -12.20458 -12.04518 -11.90678 -11.15643 -11.01821 -10.68536 -10.38742 -8.68735 -8.20116 -6.43320 -1.09896 -0.11962 0.44295 0.49725 0.71283 1.35501 1.40705 1.49109 2.06632 2.31512 2.37447 2.71567 3.02979 3.39641 3.76278 3.84852 3.93753 4.10622 4.20412 4.39325 4.49936 4.55352 4.61429 4.65471 4.73381 4.85137 4.90240 5.04232 5.06298 5.12828 5.23179 5.46009 5.59987 5.94439 6.08658 6.20142 6.36356 6.62204 6.70319 7.28813 8.76647 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.004791 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.555064 B = 5842.359815 C = 6442.617096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.414 3.586 3 O -0.474 6.474 4 C -0.044 4.044 5 C -0.173 4.173 6 C 0.276 3.724 7 N -0.589 5.589 8 C 0.077 3.923 9 C 0.252 3.748 10 C -0.548 4.548 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.279 1.279 18 C -0.188 4.188 19 C 0.003 3.997 20 C -0.120 4.120 21 N 0.051 4.949 22 O -0.188 6.188 23 O -0.203 6.203 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.168 0.832 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.029 0.971 32 H 0.031 0.969 33 H 0.269 0.731 34 H 0.145 0.855 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 7.144 0.846 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.291 3.709 3 O -0.349 6.349 4 C -0.048 4.048 5 C -0.197 4.197 6 C 0.161 3.839 7 N -0.289 5.289 8 C -0.065 4.065 9 C 0.131 3.869 10 C -0.586 4.586 11 H 0.071 0.929 12 C -0.177 4.177 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.212 4.212 19 C -0.018 4.018 20 C -0.209 4.209 21 N 0.558 4.442 22 O -0.399 6.399 23 O -0.408 6.408 24 H 0.105 0.895 25 H 0.143 0.857 26 H 0.128 0.872 27 H 0.185 0.815 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.954 7.221 1.689 12.412 hybrid contribution 1.176 -0.315 -0.643 1.376 sum -8.778 6.905 1.047 11.218 Atomic orbital electron populations 1.22237 0.89233 1.05919 1.06746 1.22954 0.93752 0.85874 0.68330 1.90571 1.73040 1.34220 1.37081 1.20245 0.96547 0.96014 0.91950 1.20731 1.03541 0.97086 0.98302 1.18287 0.87247 0.91013 0.87330 1.47536 1.50900 1.23228 1.07198 1.22002 1.03099 0.96203 0.85152 1.19180 0.89968 0.80003 0.97708 1.21707 0.94688 0.93582 1.48658 0.92930 1.25591 1.02626 0.94728 0.94713 1.69994 1.36805 0.99520 1.49402 0.85570 0.80274 0.78177 0.78041 1.19805 1.20277 1.20489 1.20972 1.05975 1.03349 0.90866 1.20706 0.90025 0.91311 0.99741 1.20663 1.14898 1.01634 0.83669 1.43591 0.98118 0.99729 1.02737 1.94484 1.64223 1.55766 1.25426 1.94448 1.48012 1.07622 1.90721 0.89487 0.85736 0.87225 0.81466 0.90497 0.90947 0.89808 0.95264 0.95075 0.92200 0.83760 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 9.48 71.24 0.68 -2.79 16 2 C 0.41 11.37 4.53 28.04 0.13 11.49 16 3 O -0.47 -15.98 17.86 -2.96 -0.05 -16.03 16 4 C -0.04 -1.27 5.46 -20.17 -0.11 -1.38 16 5 C -0.17 -4.76 8.95 22.72 0.20 -4.55 16 6 C 0.28 8.80 6.55 38.16 0.25 9.05 16 7 N -0.59 -19.92 2.99 -726.73 -2.17 -22.09 16 8 C 0.08 1.96 10.19 127.77 1.30 3.26 16 9 C 0.25 10.75 4.91 85.63 0.42 11.17 16 10 C -0.55 -26.56 9.39 25.60 0.24 -26.32 16 11 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 12 C 0.02 1.21 5.46 84.65 0.46 1.68 16 13 N -0.92 -48.24 13.29 21.45 0.28 -47.96 16 14 Si 0.95 40.40 29.54 68.60 2.03 42.43 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 C -0.19 -6.18 9.20 22.47 0.21 -5.97 16 19 C 0.00 0.08 9.54 22.20 0.21 0.29 16 20 C -0.12 -3.77 6.87 36.70 0.25 -3.52 16 21 N 0.05 1.69 4.45 -45.70 -0.20 1.49 16 22 O -0.19 -6.38 18.46 18.89 0.35 -6.04 16 23 O -0.20 -6.80 15.12 18.90 0.29 -6.51 16 24 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.11 2.09 7.45 -2.39 -0.02 2.07 16 27 H 0.17 3.67 6.13 -2.91 -0.02 3.65 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.96 8.07 -2.39 -0.02 1.95 16 30 H 0.08 1.76 6.19 -2.39 -0.01 1.74 16 31 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 32 H 0.03 1.40 6.19 -2.39 -0.01 1.39 16 33 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 34 H 0.14 5.19 6.12 -2.91 -0.02 5.18 16 35 H 0.16 4.37 7.61 -2.91 -0.02 4.35 16 Total: -1.00 -59.36 309.78 5.88 -53.48 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.13 Total: 8.81 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.24 Total: -7.58 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -2.09 Total: -68.56 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: 0.58 Total: -28.58 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -59.36 5.88 -53.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228256979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.642 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds