Wall clock time and date at job start Tue Mar 31 2020 01:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21317 * 119.99471 * 2 1 4 4 C 1.46669 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.40115 * 120.14130 * 359.97438 * 4 2 1 6 6 C 1.36498 * 120.03211 * 179.76539 * 5 4 2 7 7 C 1.39186 * 120.31954 * 0.51056 * 6 5 4 8 8 O 1.35659 * 119.85981 * 179.76194 * 7 6 5 9 9 C 1.42896 * 117.00090 * 359.72716 * 8 7 6 10 10 C 1.53005 * 109.46971 * 180.02562 * 9 8 7 11 11 C 1.50698 * 115.54760 * 294.87114 * 10 9 8 12 12 H 1.08001 * 119.99471 * 99.39242 * 11 10 9 13 13 C 1.37872 * 120.00597 * 279.39290 * 11 10 9 14 14 N 1.31512 * 119.99973 * 5.98795 * 13 11 10 15 15 Si 1.86804 * 120.00267 * 185.98610 * 13 11 10 16 16 H 1.48499 * 109.47030 * 90.00034 * 15 13 11 17 17 H 1.48495 * 109.46982 * 210.00162 * 15 13 11 18 18 H 1.48504 * 109.46927 * 329.99915 * 15 13 11 19 19 C 1.52998 * 117.51804 * 80.58087 * 10 9 8 20 20 C 1.52998 * 60.00027 * 107.47872 * 19 10 9 21 21 C 1.38910 * 120.27688 * 359.48466 * 7 6 5 22 22 C 1.38011 * 119.96651 * 0.25480 * 21 7 6 23 23 F 1.35100 * 120.16012 * 180.02562 * 22 21 7 24 24 H 1.09005 * 109.47493 * 239.99966 * 1 2 3 25 25 H 1.08999 * 109.47266 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47302 * 120.00146 * 1 2 3 27 27 H 1.07998 * 119.98667 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.84011 * 180.25117 * 6 5 4 29 29 H 1.08993 * 109.47347 * 59.99888 * 9 8 7 30 30 H 1.08997 * 109.47131 * 299.99400 * 9 8 7 31 31 H 0.97000 * 120.00204 * 180.02562 * 14 13 11 32 32 H 1.09007 * 117.49310 * 214.96774 * 19 10 9 33 33 H 1.08996 * 117.49830 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.49858 * 252.50863 * 20 19 10 35 35 H 1.09009 * 117.51777 * 107.47997 * 20 19 10 36 36 H 1.08003 * 120.01852 * 180.23669 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0507 0.0000 4 6 2.2403 -1.2702 0.0006 5 6 1.5427 -2.4853 0.0017 6 6 2.2275 -3.6661 -0.0027 7 6 3.6193 -3.6713 0.0026 8 8 4.2904 -4.8503 0.0031 9 6 3.5048 -6.0439 0.0042 10 6 4.4294 -7.2630 0.0053 11 6 5.2777 -7.4364 -1.2281 12 1 6.3099 -7.1186 -1.2225 13 6 4.7363 -8.0006 -2.3636 14 7 3.4519 -8.2792 -2.4111 15 14 5.8270 -8.3693 -3.8346 16 1 6.3742 -9.7444 -3.7127 17 1 5.0283 -8.2631 -5.0820 18 1 6.9456 -7.3935 -3.8784 19 6 5.0335 -7.6908 1.3443 20 6 3.9274 -8.5297 0.7012 21 6 4.3241 -2.4743 0.0014 22 6 3.6436 -1.2736 0.0004 23 9 4.3251 -0.1071 -0.0012 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 0.4628 -2.4877 0.0017 28 1 1.6866 -4.6009 -0.0059 29 1 2.8755 -6.0656 -0.8854 30 1 2.8762 -6.0644 0.8945 31 1 3.0710 -8.6765 -3.2099 32 1 6.0447 -8.0977 1.3331 33 1 4.7726 -7.1035 2.2247 34 1 2.9386 -8.4945 1.1586 35 1 4.2105 -9.4885 0.2667 36 1 5.4041 -2.4832 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232460724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:56 Heat of formation + Delta-G solvation = -74.120208 kcal Electronic energy + Delta-G solvation = -20907.899504 eV Core-core repulsion = 17465.888102 eV Total energy + Delta-G solvation = -3442.011402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.82636 -40.08239 -39.04489 -37.19226 -35.88892 -32.09378 -31.74820 -30.42469 -29.07774 -26.86690 -25.42142 -23.50423 -22.40466 -21.28401 -20.04366 -19.32758 -18.21664 -16.90377 -16.56925 -16.02452 -15.80142 -15.76851 -15.11642 -14.71606 -14.64909 -14.56378 -14.33940 -14.06427 -13.54830 -12.97122 -12.76574 -12.38103 -12.32781 -12.20169 -11.92509 -11.77528 -11.25240 -11.04874 -10.87828 -10.62585 -10.50857 -10.32756 -9.75422 -9.72172 -9.02673 -8.88671 -8.60011 -8.36260 -8.09683 -6.19105 -4.23513 0.69473 1.23938 2.42149 3.22821 3.30399 3.34310 3.43440 3.68905 4.03138 4.30859 4.33834 4.69797 4.95129 5.01617 5.09981 5.15817 5.24431 5.25138 5.32022 5.45051 5.70364 5.71128 5.93275 6.01463 6.08868 6.11754 6.16576 6.27930 6.42952 6.45302 6.60160 6.76854 6.87459 7.18824 7.27544 7.52935 7.76519 7.81094 8.26049 8.78537 9.43363 10.90617 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.004155 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.056507 B = 6736.855741 C = 6954.623524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.397 3.603 3 O -0.463 6.463 4 C -0.273 4.273 5 C -0.002 4.002 6 C -0.238 4.238 7 C 0.217 3.783 8 O -0.281 6.281 9 C 0.099 3.901 10 C 0.039 3.961 11 C -0.490 4.490 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.884 5.884 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.204 4.204 20 C -0.149 4.149 21 C -0.221 4.221 22 C 0.198 3.802 23 F -0.118 7.118 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 8.795 5.259 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.277 3.723 3 O -0.340 6.340 4 C -0.275 4.275 5 C -0.020 4.020 6 C -0.257 4.257 7 C 0.166 3.834 8 O -0.191 6.191 9 C 0.025 3.975 10 C 0.039 3.961 11 C -0.528 4.528 12 H 0.082 0.918 13 C -0.132 4.132 14 N -0.521 5.521 15 Si 0.720 3.280 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.241 4.241 20 C -0.187 4.187 21 C -0.240 4.240 22 C 0.178 3.822 23 F -0.096 7.096 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.493 9.238 5.128 12.402 hybrid contribution 0.327 -0.374 -0.885 1.014 sum -6.166 8.864 4.244 11.602 Atomic orbital electron populations 1.22214 0.93792 1.04891 1.04480 1.22130 0.91592 0.87236 0.71368 1.90585 1.72103 1.34128 1.37178 1.20300 0.92215 0.96236 1.18784 1.20765 0.99932 0.90017 0.91295 1.21186 0.93454 1.00069 1.10956 1.19217 0.90373 0.87046 0.86725 1.86197 1.36763 1.12071 1.84035 1.22839 0.93714 0.81229 0.99739 1.18716 0.96743 0.89220 0.91438 1.20405 0.96835 1.40619 0.94893 0.91838 1.24978 0.94966 0.94930 0.98364 1.69954 1.10840 1.42415 1.28869 0.86576 0.80693 0.78886 0.81848 1.20503 1.21170 1.19672 1.22982 0.98062 1.05769 0.97260 1.22592 0.95713 0.96951 1.03416 1.20257 1.01712 0.88696 1.13345 1.17464 0.88669 0.81035 0.94987 1.91563 1.79591 1.45814 1.92600 0.88933 0.89901 0.88874 0.84275 0.83923 0.90260 0.94496 0.92829 0.89990 0.91371 0.91570 0.89474 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 8.92 36.01 0.32 -1.29 16 2 C 0.40 5.20 7.21 -30.91 -0.22 4.98 16 3 O -0.46 -7.76 16.07 5.53 0.09 -7.67 16 4 C -0.27 -3.78 5.88 -105.01 -0.62 -4.40 16 5 C 0.00 -0.02 9.41 -39.51 -0.37 -0.39 16 6 C -0.24 -3.41 8.96 -39.86 -0.36 -3.77 16 7 C 0.22 3.68 6.70 -38.98 -0.26 3.42 16 8 O -0.28 -5.65 10.05 -18.68 -0.19 -5.84 16 9 C 0.10 2.03 4.56 37.16 0.17 2.20 16 10 C 0.04 0.90 1.53 -155.66 -0.24 0.67 16 11 C -0.49 -12.74 8.74 -34.44 -0.30 -13.04 16 12 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 13 C 0.07 1.84 5.42 -17.82 -0.10 1.74 16 14 N -0.88 -23.40 13.11 55.43 0.73 -22.67 16 15 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.20 -4.14 9.96 -26.73 -0.27 -4.40 16 20 C -0.15 -3.18 9.68 -26.73 -0.26 -3.43 16 21 C -0.22 -3.55 9.96 -39.42 -0.39 -3.94 16 22 C 0.20 3.13 7.29 -38.88 -0.28 2.85 16 23 F -0.12 -1.99 15.55 2.25 0.04 -1.95 16 24 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.14 1.12 7.03 -52.49 -0.37 0.75 16 28 H 0.14 1.94 6.26 -52.49 -0.33 1.61 16 29 H 0.08 1.74 7.63 -51.93 -0.40 1.34 16 30 H 0.04 0.66 7.61 -51.93 -0.40 0.27 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 36 H 0.15 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -29.04 319.40 -7.13 -36.17 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.41 Total: 0.58 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.18 Total: -18.82 kcal Atomic # 7 Polarization: -23.40 SS G_CDS: 0.73 Total: -22.67 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.10 Total: -13.51 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.04 -7.13 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232460724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.949 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds