Wall clock time and date at job start Mon Mar 30 2020 23:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47311 * 2 1 4 4 C 1.50702 * 109.46896 * 239.99632 * 2 1 3 5 5 O 1.21290 * 120.00426 * 245.52165 * 4 2 1 6 6 N 1.34782 * 119.99761 * 65.52690 * 4 2 1 7 7 C 1.37097 * 119.99922 * 179.97438 * 6 4 2 8 8 H 1.07996 * 119.99814 * 0.02562 * 7 6 4 9 9 C 1.38945 * 119.99886 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00386 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99995 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47199 * 120.00007 * 11 9 7 14 14 H 1.48494 * 109.47605 * 240.00338 * 11 9 7 15 15 C 1.50695 * 109.46867 * 120.00068 * 2 1 3 16 16 C 1.38238 * 120.00049 * 185.62378 * 15 2 1 17 17 C 1.38233 * 120.00403 * 180.02562 * 16 15 2 18 18 C 1.38227 * 119.99640 * 0.02562 * 17 16 15 19 19 N 1.48023 * 119.99915 * 179.97438 * 18 17 16 20 20 O 1.21806 * 119.99943 * 359.97438 * 19 18 17 21 21 O 1.21799 * 120.00201 * 179.72282 * 19 18 17 22 22 C 1.38236 * 120.00656 * 0.25533 * 18 17 16 23 23 C 1.38235 * 120.00456 * 5.64258 * 15 2 1 24 24 H 1.08999 * 109.46992 * 300.00281 * 1 2 3 25 25 H 1.09004 * 109.47170 * 60.00171 * 1 2 3 26 26 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47077 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46864 * 300.00017 * 3 2 1 29 29 H 1.09000 * 109.46877 * 59.99628 * 3 2 1 30 30 H 0.97003 * 119.99853 * 0.02562 * 6 4 2 31 31 H 0.96999 * 120.00508 * 180.02562 * 10 9 7 32 32 H 1.08004 * 119.99457 * 359.97438 * 16 15 2 33 33 H 1.07993 * 119.99929 * 179.97438 * 17 16 15 34 34 H 1.07994 * 120.00651 * 179.72914 * 22 18 17 35 35 H 1.08006 * 119.99636 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6448 -1.7518 -1.1220 6 7 1.8010 -0.1888 -2.4515 7 6 2.2584 -0.8348 -3.5708 8 1 2.8037 -1.7620 -3.4742 9 6 2.0195 -0.2972 -4.8296 10 7 1.3555 0.8307 -4.9472 11 14 2.6420 -1.1779 -6.3549 12 1 3.3539 -2.4182 -5.9544 13 1 1.4930 -1.5273 -7.2284 14 1 3.5736 -0.2888 -7.0943 15 6 2.0323 -0.7104 1.2304 16 6 3.3860 -0.7361 1.5096 17 6 3.8468 -1.3882 2.6380 18 6 2.9540 -2.0150 3.4869 19 7 3.4475 -2.7138 4.6949 20 8 4.6403 -2.7368 4.9406 21 8 2.6604 -3.2619 5.4457 22 6 1.6009 -1.9944 3.2048 23 6 1.1395 -1.3367 2.0799 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3116 0.6442 -2.5382 31 1 1.1884 1.2058 -5.8260 32 1 4.0836 -0.2474 0.8455 33 1 4.9044 -1.4086 2.8557 34 1 0.9039 -2.4879 3.8658 35 1 0.0819 -1.3173 1.8614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265729042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:35 Heat of formation + Delta-G solvation = -24.935419 kcal Electronic energy + Delta-G solvation = -21268.799656 eV Core-core repulsion = 17848.841028 eV Total energy + Delta-G solvation = -3419.958628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09730 -40.26922 -38.23556 -36.49349 -35.05304 -34.12754 -31.56245 -31.48142 -30.50931 -27.38011 -26.31043 -25.30559 -23.28601 -22.73064 -21.52715 -19.29327 -18.85358 -18.57665 -18.19269 -17.45502 -16.16970 -15.75164 -15.31895 -14.97446 -14.73186 -14.02820 -13.93638 -13.74569 -13.34879 -13.01325 -12.86950 -12.24274 -11.96979 -11.86155 -11.70928 -11.64361 -11.50277 -11.24194 -11.21564 -11.09337 -10.99338 -10.76455 -10.45077 -10.34516 -9.69034 -9.35114 -9.24269 -8.51706 -8.14605 -6.58111 -3.99507 -0.05885 1.05924 1.46321 1.50682 3.05076 3.18041 3.24275 3.36144 3.66436 4.04400 4.40192 4.44411 4.54437 4.69478 4.89889 5.02363 5.09496 5.14247 5.30140 5.33922 5.62194 5.66231 5.70592 5.73016 5.81574 5.86722 5.97370 6.09909 6.19053 6.29088 6.37325 6.44821 6.60331 7.40427 7.72279 7.87607 8.40491 9.00146 9.34314 9.83675 10.58943 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.004011 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.333333 B = 6979.381075 C = 7390.383709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.139 4.139 4 C 0.447 3.553 5 O -0.589 6.589 6 N -0.550 5.550 7 C -0.304 4.304 8 H 0.105 0.895 9 C 0.027 3.973 10 N -0.897 5.897 11 Si 0.929 3.071 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.021 3.979 16 C -0.090 4.090 17 C -0.054 4.054 18 C -0.057 4.057 19 N 0.035 4.965 20 O -0.170 6.170 21 O -0.172 6.172 22 C -0.056 4.056 23 C -0.120 4.120 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.393 0.607 31 H 0.273 0.727 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.906 2.445 11.314 11.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.053 4.053 3 C -0.196 4.196 4 C 0.232 3.768 5 O -0.474 6.474 6 N -0.185 5.185 7 C -0.433 4.433 8 H 0.123 0.877 9 C -0.176 4.176 10 N -0.537 5.537 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.020 3.980 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.140 4.140 19 N 0.552 4.448 20 O -0.385 6.385 21 O -0.386 6.386 22 C -0.075 4.075 23 C -0.138 4.138 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.162 0.838 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.782 2.183 10.612 10.980 hybrid contribution 0.118 -0.126 -0.650 0.672 sum -1.664 2.057 9.963 10.308 Atomic orbital electron populations 1.21973 0.92501 1.02784 1.02870 1.19833 0.97218 0.96079 0.92123 1.21915 1.01812 0.93066 1.02851 1.19356 0.86212 0.87409 0.83792 1.90565 1.45819 1.24917 1.86084 1.41835 1.48966 1.23403 1.04266 1.19782 1.33056 1.07303 0.83174 0.87748 1.25278 0.96796 0.96170 0.99358 1.69602 1.39921 1.18807 1.25407 0.85800 0.78529 0.79405 0.80652 1.19152 1.20603 1.20589 1.19980 0.93318 0.91707 0.93010 1.21034 0.95778 0.98719 0.95296 1.20973 1.00450 0.93549 0.92375 1.21056 0.95375 1.07214 0.90397 1.43674 1.00621 0.98717 1.01806 1.94516 0.99653 1.65281 1.79048 1.94501 1.53269 1.45343 1.45516 1.20952 0.92722 0.96472 0.97342 1.21222 1.01294 0.97861 0.93473 0.91785 0.90967 0.91707 0.91841 0.90847 0.91991 0.77244 0.91683 0.83751 0.83277 0.83311 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.11 37.16 0.26 -1.59 16 2 C -0.05 -0.75 0.72 -156.81 -0.11 -0.86 16 3 C -0.14 -1.82 8.07 37.16 0.30 -1.52 16 4 C 0.45 9.51 6.30 -10.98 -0.07 9.44 16 5 O -0.59 -14.76 15.11 5.55 0.08 -14.67 16 6 N -0.55 -12.72 5.12 -10.96 -0.06 -12.78 16 7 C -0.30 -7.94 9.68 -14.94 -0.14 -8.09 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 9 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 10 N -0.90 -22.90 13.05 55.50 0.72 -22.18 16 11 Si 0.93 20.03 29.55 -169.99 -5.02 15.00 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 15 C 0.02 0.30 4.24 -104.63 -0.44 -0.14 16 16 C -0.09 -1.29 8.37 -39.58 -0.33 -1.62 16 17 C -0.05 -0.74 9.56 -39.59 -0.38 -1.12 16 18 C -0.06 -0.82 6.85 -79.95 -0.55 -1.37 16 19 N 0.03 0.54 4.45 33.96 0.15 0.69 16 20 O -0.17 -2.72 18.45 -29.46 -0.54 -3.27 16 21 O -0.17 -2.69 18.45 -29.46 -0.54 -3.24 16 22 C -0.06 -0.71 9.56 -39.58 -0.38 -1.08 16 23 C -0.12 -1.52 8.99 -39.58 -0.36 -1.87 16 24 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 25 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 26 H 0.06 0.85 7.25 -51.93 -0.38 0.48 16 27 H 0.06 0.83 7.10 -51.93 -0.37 0.46 16 28 H 0.07 0.99 7.27 -51.93 -0.38 0.61 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.39 8.66 6.81 -40.82 -0.28 8.38 16 31 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.14 2.03 7.25 -52.48 -0.38 1.65 16 33 H 0.15 1.80 7.61 -52.49 -0.40 1.40 16 34 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 35 H 0.15 1.53 5.91 -52.48 -0.31 1.22 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -29.90 306.61 -6.52 -36.42 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.64 Total: 8.65 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.29 Total: -9.25 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.82 Total: -34.26 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.00 Total: -21.17 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.90 -6.52 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265729042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.482 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds