Wall clock time and date at job start Mon Mar 30 2020 23:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47311 * 2 1 4 4 C 1.50702 * 109.46896 * 239.99632 * 2 1 3 5 5 O 1.21290 * 120.00426 * 245.52165 * 4 2 1 6 6 N 1.34782 * 119.99761 * 65.52690 * 4 2 1 7 7 C 1.37097 * 119.99922 * 179.97438 * 6 4 2 8 8 H 1.07996 * 119.99814 * 0.02562 * 7 6 4 9 9 C 1.38945 * 119.99886 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00386 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99995 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47054 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47199 * 120.00007 * 11 9 7 14 14 H 1.48494 * 109.47605 * 240.00338 * 11 9 7 15 15 C 1.50695 * 109.46867 * 120.00068 * 2 1 3 16 16 C 1.38238 * 120.00049 * 185.62378 * 15 2 1 17 17 C 1.38233 * 120.00403 * 180.02562 * 16 15 2 18 18 C 1.38227 * 119.99640 * 0.02562 * 17 16 15 19 19 N 1.48023 * 119.99915 * 179.97438 * 18 17 16 20 20 O 1.21806 * 119.99943 * 359.97438 * 19 18 17 21 21 O 1.21799 * 120.00201 * 179.72282 * 19 18 17 22 22 C 1.38236 * 120.00656 * 0.25533 * 18 17 16 23 23 C 1.38235 * 120.00456 * 5.64258 * 15 2 1 24 24 H 1.08999 * 109.46992 * 300.00281 * 1 2 3 25 25 H 1.09004 * 109.47170 * 60.00171 * 1 2 3 26 26 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47077 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46864 * 300.00017 * 3 2 1 29 29 H 1.09000 * 109.46877 * 59.99628 * 3 2 1 30 30 H 0.97003 * 119.99853 * 0.02562 * 6 4 2 31 31 H 0.96999 * 120.00508 * 180.02562 * 10 9 7 32 32 H 1.08004 * 119.99457 * 359.97438 * 16 15 2 33 33 H 1.07993 * 119.99929 * 179.97438 * 17 16 15 34 34 H 1.07994 * 120.00651 * 179.72914 * 22 18 17 35 35 H 1.08006 * 119.99636 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6448 -1.7518 -1.1220 6 7 1.8010 -0.1888 -2.4515 7 6 2.2584 -0.8348 -3.5708 8 1 2.8037 -1.7620 -3.4742 9 6 2.0195 -0.2972 -4.8296 10 7 1.3555 0.8307 -4.9472 11 14 2.6420 -1.1779 -6.3549 12 1 3.3539 -2.4182 -5.9544 13 1 1.4930 -1.5273 -7.2284 14 1 3.5736 -0.2888 -7.0943 15 6 2.0323 -0.7104 1.2304 16 6 3.3860 -0.7361 1.5096 17 6 3.8468 -1.3882 2.6380 18 6 2.9540 -2.0150 3.4869 19 7 3.4475 -2.7138 4.6949 20 8 4.6403 -2.7368 4.9406 21 8 2.6604 -3.2619 5.4457 22 6 1.6009 -1.9944 3.2048 23 6 1.1395 -1.3367 2.0799 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3116 0.6442 -2.5382 31 1 1.1884 1.2058 -5.8260 32 1 4.0836 -0.2474 0.8455 33 1 4.9044 -1.4086 2.8557 34 1 0.9039 -2.4879 3.8658 35 1 0.0819 -1.3173 1.8614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265729042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:34 Heat of formation + Delta-G solvation = -41.992615 kcal Electronic energy + Delta-G solvation = -21269.539312 eV Core-core repulsion = 17848.841028 eV Total energy + Delta-G solvation = -3420.698284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27571 -41.54345 -39.70394 -37.69724 -36.39404 -35.97963 -33.31805 -32.53165 -31.76282 -28.41089 -27.50255 -27.11138 -24.55111 -23.79855 -22.89164 -20.51431 -20.30420 -19.97128 -19.76122 -18.64020 -17.69450 -17.16630 -16.53286 -16.34503 -16.01376 -15.67155 -15.37914 -14.93930 -14.83341 -14.12136 -13.98835 -13.52652 -13.47500 -13.09753 -12.99126 -12.92835 -12.79537 -12.67768 -12.53325 -12.33627 -12.32071 -12.16570 -12.03911 -11.86881 -11.53958 -10.50272 -10.32608 -10.18097 -10.03897 -8.50181 -5.98459 -1.22282 0.02689 0.30376 0.36686 1.33902 1.41407 1.53791 1.99174 2.20909 2.32981 3.14646 3.19256 3.29768 3.41376 3.53813 3.82936 3.93772 4.06763 4.19059 4.23805 4.33129 4.64131 4.68377 4.72841 4.76696 4.81857 4.85460 4.98946 5.15252 5.16286 5.24663 5.37969 5.39890 5.50449 5.96431 6.50363 6.54402 7.08874 7.51696 8.05719 8.66754 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.004011 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.333333 B = 6979.381075 C = 7390.383709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.137 4.137 4 C 0.449 3.551 5 O -0.630 6.630 6 N -0.560 5.560 7 C -0.334 4.334 8 H 0.078 0.922 9 C -0.006 4.006 10 N -0.914 5.914 11 Si 0.987 3.013 12 H -0.276 1.276 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.006 3.994 16 C -0.101 4.101 17 C -0.056 4.056 18 C -0.068 4.068 19 N 0.035 4.965 20 O -0.192 6.192 21 O -0.169 6.169 22 C -0.049 4.049 23 C -0.112 4.112 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.398 0.602 31 H 0.279 0.721 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.173 0.827 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 3.016 12.018 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 C -0.195 4.195 4 C 0.236 3.764 5 O -0.518 6.518 6 N -0.195 5.195 7 C -0.464 4.464 8 H 0.096 0.904 9 C -0.207 4.207 10 N -0.555 5.555 11 Si 0.811 3.189 12 H -0.200 1.200 13 H -0.196 1.196 14 H -0.196 1.196 15 C 0.005 3.995 16 C -0.120 4.120 17 C -0.075 4.075 18 C -0.152 4.152 19 N 0.549 4.451 20 O -0.402 6.402 21 O -0.385 6.385 22 C -0.068 4.068 23 C -0.130 4.130 24 H 0.124 0.876 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.092 2.781 11.325 12.064 hybrid contribution 0.519 -0.330 -0.805 1.013 sum -2.573 2.451 10.519 11.104 Atomic orbital electron populations 1.22027 0.90191 1.03198 1.04643 1.19741 0.98914 0.96503 0.89048 1.21935 1.01502 0.91752 1.04267 1.20456 0.84262 0.86729 0.84970 1.90533 1.47239 1.26955 1.87032 1.41856 1.49608 1.23647 1.04427 1.19675 1.34438 1.07285 0.84989 0.90435 1.25935 0.96689 0.96759 1.01282 1.69647 1.40215 1.19374 1.26253 0.84957 0.78250 0.78105 0.77585 1.20043 1.19635 1.19630 1.20074 0.93700 0.92536 0.93218 1.21077 0.96085 0.99269 0.95555 1.21062 1.01099 0.93266 0.92083 1.21258 0.96266 1.07591 0.90049 1.43855 1.00503 0.98620 1.02082 1.94517 1.00000 1.66135 1.79581 1.94481 1.53126 1.45181 1.45760 1.21267 0.92322 0.95746 0.97434 1.21509 1.02390 0.96503 0.92627 0.87607 0.91651 0.91990 0.92514 0.91445 0.88471 0.76717 0.91187 0.84259 0.82368 0.80917 0.80428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 7.11 71.98 0.51 -2.78 16 2 C -0.04 -1.12 0.72 -53.67 -0.04 -1.16 16 3 C -0.14 -3.34 8.07 71.98 0.58 -2.76 16 4 C 0.45 19.21 6.30 87.66 0.55 19.77 16 5 O -0.63 -32.29 15.11 -3.06 -0.05 -32.34 16 6 N -0.56 -26.34 5.12 -306.98 -1.57 -27.91 16 7 C -0.33 -17.94 9.68 84.04 0.81 -17.12 16 8 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 9 C -0.01 -0.30 5.50 84.93 0.47 0.16 16 10 N -0.91 -46.53 13.05 21.66 0.28 -46.24 16 11 Si 0.99 41.14 29.55 68.60 2.03 43.17 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 15 C 0.01 0.15 4.24 -19.87 -0.08 0.07 16 16 C -0.10 -2.85 8.37 22.27 0.19 -2.66 16 17 C -0.06 -1.49 9.56 22.27 0.21 -1.28 16 18 C -0.07 -1.84 6.85 36.37 0.25 -1.59 16 19 N 0.03 1.03 4.45 -46.47 -0.21 0.83 16 20 O -0.19 -6.06 18.45 18.88 0.35 -5.71 16 21 O -0.17 -5.00 18.45 18.89 0.35 -4.65 16 22 C -0.05 -1.09 9.56 22.27 0.21 -0.88 16 23 C -0.11 -2.48 8.99 22.27 0.20 -2.28 16 24 H 0.11 1.57 7.78 -2.39 -0.02 1.55 16 25 H 0.06 1.61 7.97 -2.38 -0.02 1.59 16 26 H 0.06 1.46 7.25 -2.39 -0.02 1.44 16 27 H 0.06 1.44 7.10 -2.39 -0.02 1.43 16 28 H 0.07 1.73 7.27 -2.38 -0.02 1.71 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.40 17.69 6.81 -92.71 -0.63 17.06 16 31 H 0.28 13.28 8.31 -92.71 -0.77 12.51 16 32 H 0.14 3.96 7.25 -2.91 -0.02 3.94 16 33 H 0.16 3.78 7.61 -2.91 -0.02 3.76 16 34 H 0.17 3.02 7.61 -2.91 -0.02 3.00 16 35 H 0.18 2.86 5.91 -2.91 -0.02 2.84 16 Total: -1.00 -65.28 306.61 5.55 -59.72 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.51 Total: 25.65 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 3.86 Total: -12.51 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.50 Total: -73.33 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: 0.65 Total: -42.71 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -65.28 5.55 -59.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265729042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.732 kcal (2) G-P(sol) polarization free energy of solvation -65.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds