Wall clock time and date at job start Tue Mar 31 2020 01:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47347 * 2 1 4 4 C 1.37099 * 119.99699 * 94.62100 * 3 2 1 5 5 H 1.08009 * 119.99925 * 217.87651 * 4 3 2 6 6 C 1.38950 * 120.00622 * 37.87342 * 4 3 2 7 7 N 1.31412 * 119.99610 * 19.70738 * 6 4 3 8 8 Si 1.86796 * 120.00441 * 199.70501 * 6 4 3 9 9 H 1.48502 * 109.47065 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47231 * 119.99909 * 8 6 4 11 11 H 1.48498 * 109.47213 * 240.00019 * 8 6 4 12 12 C 1.34772 * 120.00318 * 274.89246 * 3 2 1 13 13 O 1.21288 * 120.00478 * 179.72232 * 12 3 2 14 14 C 1.50705 * 119.99609 * 359.72686 * 12 3 2 15 15 C 1.50703 * 109.46906 * 179.97438 * 14 12 3 16 16 C 1.38255 * 120.00141 * 269.72653 * 15 14 12 17 17 C 1.38213 * 120.00135 * 179.78781 * 16 15 14 18 18 C 1.38258 * 119.99836 * 0.46149 * 17 16 15 19 19 C 1.38213 * 119.99863 * 359.77384 * 18 17 16 20 20 N 1.48023 * 119.99601 * 180.02562 * 19 18 17 21 21 O 1.21795 * 119.99716 * 180.02562 * 20 19 18 22 22 O 1.21801 * 120.00305 * 0.02562 * 20 19 18 23 23 C 1.38216 * 119.99969 * 89.99901 * 15 14 12 24 24 H 1.08998 * 109.46708 * 299.99744 * 1 2 3 25 25 H 1.09000 * 109.46924 * 59.99746 * 1 2 3 26 26 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47167 * 240.00072 * 2 1 3 28 28 H 1.09000 * 109.46924 * 120.00254 * 2 1 3 29 29 H 0.97001 * 120.00230 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46867 * 299.99807 * 14 12 3 31 31 H 1.09000 * 109.47383 * 59.99991 * 14 12 3 32 32 H 1.08002 * 119.99600 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.99833 * 180.24987 * 17 16 15 34 34 H 1.07998 * 119.99781 * 179.78582 * 18 17 16 35 35 H 1.08004 * 119.99827 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3371 1.9955 1.1835 5 1 2.1081 3.0411 1.3280 6 6 2.9547 1.2731 2.1971 7 7 3.5778 0.1504 1.9179 8 14 2.8992 1.8979 3.9566 9 1 2.1414 3.1741 4.0051 10 1 2.2285 0.8916 4.8184 11 1 4.2830 2.1245 4.4454 12 6 2.1493 2.0497 -1.1629 13 8 2.5488 3.1949 -1.1625 14 6 1.7990 1.3743 -2.4638 15 6 2.0315 2.3309 -3.6049 16 6 1.0098 3.1583 -4.0325 17 6 1.2244 4.0387 -5.0761 18 6 2.4579 4.0851 -5.6988 19 6 3.4779 3.2545 -5.2745 20 7 4.7987 3.3046 -5.9407 21 8 5.6974 2.5723 -5.5672 22 8 4.9869 4.0782 -6.8626 23 6 3.2646 2.3770 -4.2276 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.0087 -0.3542 2.6256 30 1 2.4254 0.4921 -2.5953 31 1 0.7506 1.0765 -2.4478 32 1 0.0448 3.1189 -3.5490 33 1 0.4274 4.6879 -5.4075 34 1 2.6245 4.7706 -6.5165 35 1 4.0615 1.7277 -3.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265994687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:26 Heat of formation + Delta-G solvation = -29.704693 kcal Electronic energy + Delta-G solvation = -21233.268767 eV Core-core repulsion = 17813.103327 eV Total energy + Delta-G solvation = -3420.165439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.30181 -41.03948 -39.85479 -37.73154 -36.92023 -34.44412 -33.74562 -32.81057 -31.14960 -29.33804 -27.64198 -26.63046 -24.00255 -23.69149 -23.04443 -21.00851 -19.85126 -19.58621 -18.75392 -18.66953 -17.79378 -17.53379 -17.00784 -16.61870 -16.09263 -15.57657 -15.29641 -14.69426 -14.53521 -14.38525 -13.89606 -13.65294 -13.57418 -13.23488 -12.90676 -12.89593 -12.78450 -12.64607 -12.42217 -12.36016 -12.30746 -12.18876 -12.06980 -11.77111 -10.90640 -10.61549 -10.46509 -10.05580 -9.44050 -8.35558 -6.08899 -1.22225 -0.01271 0.31375 0.37334 1.34544 1.40562 1.53218 2.03014 2.23103 2.35095 3.00489 3.10877 3.35285 3.50305 3.76858 3.95617 3.97704 4.08407 4.14716 4.33967 4.44733 4.52854 4.66447 4.71797 4.78776 4.89633 4.99610 5.07963 5.11600 5.27326 5.35383 5.45345 5.54936 5.59822 6.21320 6.46649 6.52715 7.17572 7.47232 8.05616 8.67085 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.004440 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.247179 B = 6305.027511 C = 6761.872576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.452 5.452 4 C -0.339 4.339 5 H 0.062 0.938 6 C 0.004 3.996 7 N -0.890 5.890 8 Si 0.978 3.022 9 H -0.271 1.271 10 H -0.263 1.263 11 H -0.283 1.283 12 C 0.449 3.551 13 O -0.627 6.627 14 C -0.090 4.090 15 C -0.060 4.060 16 C -0.051 4.051 17 C -0.101 4.101 18 C -0.060 4.060 19 C -0.064 4.064 20 N 0.033 4.967 21 O -0.215 6.215 22 O -0.150 6.150 23 C -0.062 4.062 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.273 0.727 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.167 0.833 33 H 0.192 0.808 34 H 0.174 0.826 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.351 0.105 -11.617 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.030 4.030 3 N -0.171 5.171 4 C -0.467 4.467 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.528 5.528 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.187 1.187 11 H -0.209 1.209 12 C 0.239 3.761 13 O -0.514 6.514 14 C -0.130 4.130 15 C -0.062 4.062 16 C -0.069 4.069 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.147 4.147 20 N 0.547 4.453 21 O -0.419 6.419 22 O -0.372 6.372 23 C -0.082 4.082 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.209 0.791 34 H 0.191 0.809 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.631 0.383 -11.122 15.390 hybrid contribution 1.183 0.099 0.991 1.547 sum -9.448 0.482 -10.131 13.861 Atomic orbital electron populations 1.22108 0.94846 1.02598 1.01631 1.21694 0.94396 0.83349 1.03603 1.43770 1.55910 1.13043 1.04371 1.19373 1.39342 0.96363 0.91617 0.92005 1.26071 0.93416 0.96628 1.03763 1.69983 1.31267 1.17051 1.34506 0.85121 0.77959 0.78744 0.78009 1.19504 1.18738 1.20859 1.21044 0.81473 0.87587 0.86033 1.90514 1.52212 1.20860 1.87769 1.20732 1.06099 0.97544 0.88609 1.19545 0.92612 0.98533 0.95476 1.21933 0.99850 0.91151 0.93955 1.21649 0.96588 0.98796 0.94879 1.21416 0.91062 0.95517 0.99851 1.21253 0.83853 1.07701 1.01900 1.43932 1.03497 0.98385 0.99481 1.94557 1.37598 1.40516 1.69255 1.94438 1.88303 1.34066 1.20425 1.20896 0.98377 0.96523 0.92365 0.94174 0.91832 0.89785 0.91193 0.90051 0.91764 0.87558 0.84931 0.81507 0.79053 0.80910 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 10.15 71.98 0.73 -3.85 16 2 C 0.09 3.62 5.43 86.38 0.47 4.09 16 3 N -0.45 -21.71 2.53 -635.53 -1.61 -23.32 16 4 C -0.34 -18.61 8.91 84.04 0.75 -17.86 16 5 H 0.06 3.66 7.76 -2.91 -0.02 3.64 16 6 C 0.00 0.19 4.95 84.93 0.42 0.61 16 7 N -0.89 -47.22 11.45 21.66 0.25 -46.97 16 8 Si 0.98 41.69 29.60 68.60 2.03 43.72 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 C 0.45 20.37 7.59 87.66 0.67 21.04 16 13 O -0.63 -34.08 15.90 -3.05 -0.05 -34.13 16 14 C -0.09 -2.78 4.43 29.10 0.13 -2.65 16 15 C -0.06 -1.75 4.37 -19.86 -0.09 -1.84 16 16 C -0.05 -1.10 9.70 22.27 0.22 -0.88 16 17 C -0.10 -1.74 10.05 22.27 0.22 -1.52 16 18 C -0.06 -1.30 9.56 22.27 0.21 -1.08 16 19 C -0.06 -1.92 6.85 36.37 0.25 -1.67 16 20 N 0.03 1.11 4.45 -46.46 -0.21 0.90 16 21 O -0.22 -8.16 18.45 18.89 0.35 -7.81 16 22 O -0.15 -4.80 18.45 18.88 0.35 -4.46 16 23 C -0.06 -2.00 9.21 22.27 0.21 -1.79 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.60 6.65 -2.39 -0.02 1.58 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 28 H 0.08 3.68 5.54 -2.39 -0.01 3.67 16 29 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.11 3.06 7.36 -2.39 -0.02 3.05 16 31 H 0.13 3.04 6.53 -2.39 -0.02 3.03 16 32 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.17 2.87 7.61 -2.91 -0.02 2.85 16 35 H 0.13 4.55 7.61 -2.91 -0.02 4.53 16 Total: -1.00 -72.92 309.77 6.42 -66.50 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.12 Total: 12.96 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.18 Total: -7.40 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.57 Total: -69.39 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: 0.65 Total: -46.40 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.92 6.42 -66.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265994687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.795 kcal (2) G-P(sol) polarization free energy of solvation -72.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds