Wall clock time and date at job start Tue Mar 31 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34675 * 117.00050 * 2 1 4 4 O 1.21440 * 119.99786 * 0.02562 * 3 2 1 5 5 C 1.48063 * 120.00362 * 179.97438 * 3 2 1 6 6 C 1.39279 * 119.66353 * 179.72780 * 5 3 2 7 7 C 1.39756 * 118.90257 * 179.71073 * 6 5 3 8 8 C 1.48139 * 120.89361 * 180.25814 * 7 6 5 9 9 O 1.21517 * 120.00020 * 0.29916 * 8 7 6 10 10 N 1.34779 * 120.00585 * 180.29878 * 8 7 6 11 11 C 1.46496 * 120.00475 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.46676 * 34.99953 * 11 10 8 13 13 C 1.52996 * 109.47214 * 275.00407 * 11 10 8 14 14 C 1.50697 * 109.47201 * 154.99612 * 11 10 8 15 15 H 1.08002 * 119.99782 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00154 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00022 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00212 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46922 * 60.00449 * 18 16 14 20 20 H 1.48501 * 109.47015 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47040 * 300.00446 * 18 16 14 22 22 C 1.39804 * 118.21922 * 0.55394 * 7 6 5 23 23 C 1.38526 * 119.19888 * 359.72477 * 22 7 6 24 24 N 1.31442 * 121.03681 * 359.97438 * 23 22 7 25 25 H 1.09001 * 109.46626 * 60.00051 * 1 2 3 26 26 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47070 * 300.00034 * 1 2 3 28 28 H 1.08004 * 120.55007 * 359.97438 * 6 5 3 29 29 H 0.96997 * 119.99388 * 359.97438 * 10 8 7 30 30 H 1.08999 * 109.47692 * 59.99275 * 13 11 10 31 31 H 1.08999 * 109.47064 * 180.02562 * 13 11 10 32 32 H 1.09004 * 109.46973 * 299.99870 * 13 11 10 33 33 H 0.96990 * 120.00269 * 179.97438 * 17 16 14 34 34 H 1.08000 * 120.40171 * 179.75363 * 22 7 6 35 35 H 1.07998 * 119.47925 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4020 2.2184 0.0005 5 6 3.5421 1.2775 0.0006 6 6 4.1670 2.5222 -0.0052 7 6 5.5635 2.5769 0.0016 8 6 6.2738 3.8770 0.0016 9 8 5.6416 4.9147 0.0012 10 7 7.6212 3.9088 0.0022 11 6 8.3235 5.1944 0.0016 12 1 7.7586 5.9173 0.5904 13 6 8.4583 5.7014 -1.4356 14 6 9.6941 5.0183 0.6029 15 1 10.0105 4.0459 0.9502 16 6 10.5446 6.0984 0.7085 17 7 10.1595 7.2825 0.2850 18 14 12.2438 5.8800 1.4531 19 1 13.0129 4.8950 0.6508 20 1 12.9557 7.1832 1.4526 21 1 12.1134 5.3881 2.8482 22 6 6.2723 1.3719 0.0021 23 6 5.5726 0.1763 0.0016 24 7 4.2583 0.1603 0.0013 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.5821 3.4302 -0.0105 29 1 8.1258 3.0805 0.0029 30 1 7.4669 5.8287 -1.8705 31 1 8.9812 6.6577 -1.4360 32 1 9.0231 4.9785 -2.0244 33 1 10.7576 8.0424 0.3597 34 1 7.3523 1.3730 0.0032 35 1 6.1156 -0.7572 0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267546126.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:14 Heat of formation + Delta-G solvation = -104.740413 kcal Electronic energy + Delta-G solvation = -20596.403187 eV Core-core repulsion = 17172.983955 eV Total energy + Delta-G solvation = -3423.419232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.13914 -41.16086 -40.02807 -37.67638 -36.84872 -34.70341 -33.82351 -32.81755 -30.82624 -28.87853 -27.36073 -26.36541 -25.40144 -23.39981 -22.58902 -21.34827 -20.02598 -18.82971 -18.26305 -17.69618 -17.58520 -17.43223 -16.87868 -16.50489 -16.20772 -16.09746 -15.42037 -15.09029 -14.90479 -14.69617 -14.45659 -14.16377 -13.73749 -13.24285 -13.02315 -12.98233 -12.89790 -12.74488 -12.27710 -12.16722 -12.06152 -11.87588 -11.36654 -11.21115 -11.12858 -10.75730 -10.59920 -10.50066 -9.89404 -8.17609 -6.35778 -0.82379 -0.38024 1.09301 1.38413 1.47929 1.49677 1.57401 1.87524 2.18456 2.46714 2.67089 2.99832 3.13644 3.49118 3.62045 3.66934 3.71583 4.11465 4.27879 4.32323 4.49781 4.55059 4.69653 4.73809 4.82320 4.90271 5.05933 5.09931 5.29865 5.37626 5.53423 5.64755 5.85117 6.06429 6.30326 6.63819 6.69365 6.77686 7.24511 7.40591 8.88717 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.003367 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.103398 B = 8312.911233 C = 8768.559422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.527 3.473 4 O -0.522 6.522 5 C 0.072 3.928 6 C -0.064 4.064 7 C -0.098 4.098 8 C 0.540 3.460 9 O -0.587 6.587 10 N -0.686 5.686 11 C 0.270 3.730 12 H 0.001 0.999 13 C -0.137 4.137 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.290 1.290 21 H -0.270 1.270 22 C -0.085 4.085 23 C 0.112 3.888 24 N -0.430 5.430 25 H 0.065 0.935 26 H 0.139 0.861 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.410 0.590 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.185 0.815 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -19.416 -1.003 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C 0.370 3.630 4 O -0.411 6.411 5 C -0.062 4.062 6 C -0.085 4.085 7 C -0.109 4.109 8 C 0.327 3.673 9 O -0.469 6.469 10 N -0.335 5.335 11 C 0.167 3.833 12 H 0.019 0.981 13 C -0.195 4.195 14 C -0.586 4.586 15 H 0.099 0.901 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.216 1.216 21 H -0.195 1.195 22 C -0.105 4.105 23 C -0.049 4.049 24 N -0.143 5.143 25 H 0.084 0.916 26 H 0.157 0.843 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.247 0.753 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.202 0.798 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.430 -18.965 -1.024 21.668 hybrid contribution 0.978 1.386 0.296 1.722 sum -9.452 -17.579 -0.728 19.972 Atomic orbital electron populations 1.23715 0.73910 1.06282 1.02889 1.86649 1.25319 1.30388 1.82870 1.20802 0.87894 0.82010 0.72261 1.90871 1.66408 1.37107 1.46728 1.19768 0.91105 0.89592 1.05770 1.22038 0.94358 0.98696 0.93457 1.20336 0.93575 0.94340 1.02633 1.18585 0.83183 0.88474 0.77089 1.90746 1.67673 1.35987 1.52491 1.46151 1.04805 1.11550 1.70993 1.18451 0.90949 0.80361 0.93560 0.98125 1.21930 0.97724 1.02605 0.97286 1.21506 0.98751 0.96674 1.41630 0.90105 1.25818 1.02787 0.94566 0.95424 1.70047 1.38122 1.00730 1.46767 0.85369 0.78419 0.77374 0.79014 1.18514 1.21591 1.19525 1.23186 1.03912 0.91107 0.92289 1.23686 0.88019 0.99640 0.93505 1.67588 1.09989 1.29117 1.07564 0.91581 0.84307 0.91603 0.84336 0.75299 0.97002 0.91310 0.93515 0.92527 0.79817 0.75880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -7.70 10.38 -55.85 -0.58 -8.28 16 3 C 0.53 14.68 7.95 70.43 0.56 15.24 16 4 O -0.52 -17.00 16.11 20.03 0.32 -16.67 16 5 C 0.07 1.97 6.74 41.87 0.28 2.25 16 6 C -0.06 -1.98 9.20 22.89 0.21 -1.77 16 7 C -0.10 -2.88 5.91 -19.90 -0.12 -2.99 16 8 C 0.54 21.35 7.76 86.87 0.67 22.03 16 9 O -0.59 -29.17 16.11 -3.77 -0.06 -29.24 16 10 N -0.69 -26.54 5.03 -448.70 -2.26 -28.79 16 11 C 0.27 13.44 2.56 44.24 0.11 13.55 16 12 H 0.00 0.05 7.58 -2.38 -0.02 0.03 16 13 C -0.14 -6.71 9.26 71.98 0.67 -6.04 16 14 C -0.55 -27.44 8.73 25.60 0.22 -27.21 16 15 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.01 0.74 5.30 84.65 0.45 1.19 16 17 N -0.92 -51.50 11.32 21.45 0.24 -51.26 16 18 Si 0.97 40.22 29.54 68.60 2.03 42.25 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 C -0.08 -1.58 9.62 22.72 0.22 -1.36 16 23 C 0.11 1.76 11.17 84.82 0.95 2.70 16 24 N -0.43 -9.72 10.09 -185.12 -1.87 -11.59 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.14 4.86 7.33 -2.91 -0.02 4.84 16 29 H 0.41 12.17 6.67 -92.71 -0.62 11.55 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 32 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.27 14.17 8.31 -92.72 -0.77 13.40 16 34 H 0.18 2.22 6.53 -2.91 -0.02 2.20 16 35 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -73.09 313.63 3.77 -69.32 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.52 Total: 15.12 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.43 Total: 19.15 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.88 Total: -91.64 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.32 Total: -54.19 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -73.09 3.77 -69.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267546126.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.424 kcal (2) G-P(sol) polarization free energy of solvation -73.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds