Wall clock time and date at job start Tue Mar 31 2020 01:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34677 * 117.00164 * 2 1 4 4 O 1.21423 * 119.99979 * 359.97438 * 3 2 1 5 5 C 1.48068 * 119.99740 * 180.02562 * 3 2 1 6 6 C 1.39291 * 119.65725 * 180.25613 * 5 3 2 7 7 C 1.39757 * 118.89958 * 180.26533 * 6 5 3 8 8 C 1.48143 * 120.88869 * 179.75611 * 7 6 5 9 9 O 1.21511 * 119.99833 * 359.72084 * 8 7 6 10 10 N 1.34774 * 119.99959 * 179.72054 * 8 7 6 11 11 C 1.46500 * 120.00106 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47481 * 325.00655 * 11 10 8 13 13 C 1.53001 * 109.46746 * 85.00589 * 11 10 8 14 14 C 1.50694 * 109.47517 * 205.00289 * 11 10 8 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.39806 * 118.22004 * 359.49041 * 7 6 5 23 23 C 1.38519 * 119.19979 * 0.24278 * 22 7 6 24 24 N 1.31451 * 121.03739 * 0.02562 * 23 22 7 25 25 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46679 * 300.00027 * 1 2 3 27 27 H 1.08999 * 109.47206 * 60.00163 * 1 2 3 28 28 H 1.07998 * 120.55369 * 0.02562 * 6 5 3 29 29 H 0.97003 * 119.99853 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47809 * 59.99872 * 13 11 10 31 31 H 1.09000 * 109.47703 * 180.02562 * 13 11 10 32 32 H 1.09007 * 109.47140 * 300.00315 * 13 11 10 33 33 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 34 34 H 1.08005 * 120.40112 * 180.22581 * 22 7 6 35 35 H 1.08002 * 119.48105 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2183 -0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1671 2.5221 0.0048 7 6 5.5636 2.5767 -0.0015 8 6 6.2739 3.8768 -0.0015 9 8 5.6417 4.9145 -0.0011 10 7 7.6212 3.9086 -0.0019 11 6 8.3237 5.1942 -0.0025 12 1 7.7589 5.9165 -0.5919 13 6 8.4584 5.7023 1.4344 14 6 9.6943 5.0175 -0.6034 15 1 10.0105 4.0450 -0.9506 16 6 10.5448 6.0975 -0.7100 17 7 10.1596 7.2819 -0.2877 18 14 12.2441 5.8784 -1.4541 19 1 13.2135 5.5367 -0.3825 20 1 12.2079 4.7833 -2.4565 21 1 12.6615 7.1410 -2.1152 22 6 6.2723 1.3716 -0.0020 23 6 5.5726 0.1762 -0.0015 24 7 4.2582 0.1602 -0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.5823 3.4301 0.0099 29 1 8.1259 3.0801 -0.0026 30 1 9.0231 4.9800 2.0238 31 1 8.9806 6.6591 1.4341 32 1 7.4670 5.8300 1.8691 33 1 10.7581 8.0417 -0.3623 34 1 7.3524 1.3727 -0.0031 35 1 6.1155 -0.7575 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267546129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:17 Heat of formation + Delta-G solvation = -82.416038 kcal Electronic energy + Delta-G solvation = -20595.618664 eV Core-core repulsion = 17173.167489 eV Total energy + Delta-G solvation = -3422.451175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06798 -39.98921 -38.60581 -36.67528 -35.01584 -33.21312 -32.29047 -31.76284 -29.02323 -28.10070 -25.40481 -25.21281 -24.24298 -22.19682 -21.09259 -19.76166 -18.68189 -17.73887 -16.86039 -16.62122 -16.35653 -16.15523 -15.35682 -15.14400 -14.80073 -14.68994 -14.13901 -13.93548 -13.90181 -13.23480 -13.13122 -12.58892 -12.38054 -12.05039 -11.82673 -11.20046 -11.04140 -11.01304 -11.01200 -10.86445 -10.43915 -10.32120 -10.07308 -10.02286 -9.52162 -9.36620 -9.15071 -8.65816 -8.11768 -6.20647 -4.30982 0.21953 0.72757 2.12364 2.32295 3.19211 3.21409 3.26603 3.28267 3.66729 3.84319 3.92137 4.27885 4.50184 4.63147 4.74756 4.87143 4.94166 4.95406 5.03358 5.12166 5.28641 5.49218 5.63165 5.84247 6.06211 6.23771 6.72020 6.84530 7.02683 7.25305 7.27144 7.40807 7.57862 7.63426 7.79105 8.03987 8.43319 8.62986 8.86636 9.36488 10.85355 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039250 B = 0.003368 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.198102 B = 8312.653804 C = 8768.446113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.526 3.474 4 O -0.493 6.493 5 C 0.079 3.921 6 C -0.052 4.052 7 C -0.081 4.081 8 C 0.540 3.460 9 O -0.536 6.536 10 N -0.694 5.694 11 C 0.264 3.736 12 H 0.052 0.948 13 C -0.148 4.148 14 C -0.538 4.538 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.882 5.882 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.273 1.273 21 H -0.284 1.284 22 C -0.109 4.109 23 C 0.094 3.906 24 N -0.428 5.428 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.163 0.837 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.152 0.848 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 -15.699 1.224 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.369 3.631 4 O -0.380 6.380 5 C -0.056 4.056 6 C -0.073 4.073 7 C -0.092 4.092 8 C 0.324 3.676 9 O -0.414 6.414 10 N -0.342 5.342 11 C 0.163 3.837 12 H 0.070 0.930 13 C -0.207 4.207 14 C -0.576 4.576 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.210 1.210 22 C -0.130 4.130 23 C -0.066 4.066 24 N -0.140 5.140 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.180 0.820 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.169 0.831 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.854 -15.181 1.235 19.301 hybrid contribution 1.495 0.325 -0.357 1.571 sum -10.360 -14.856 0.879 18.133 Atomic orbital electron populations 1.23350 0.76066 1.03917 1.02725 1.86666 1.23198 1.31667 1.83512 1.20723 0.87739 0.81805 0.72867 1.90884 1.65779 1.36102 1.45205 1.19859 0.90839 0.89793 1.05152 1.22224 0.94203 0.98755 0.92140 1.20792 0.93797 0.95276 0.99379 1.18007 0.83499 0.87311 0.78776 1.90773 1.66712 1.33500 1.50455 1.46519 1.04557 1.12280 1.70848 1.18865 0.91314 0.79242 0.94328 0.92982 1.22098 0.98175 1.03352 0.97082 1.21170 0.98711 0.95855 1.41860 0.91951 1.24890 0.98765 0.94926 0.95060 1.69898 1.36559 0.99829 1.45589 0.86415 0.83490 0.77758 0.79258 1.20477 1.19800 1.21006 1.22817 1.02434 0.92557 0.95156 1.22839 0.88974 0.98295 0.96500 1.67485 1.08688 1.30084 1.07732 0.87809 0.91709 0.91695 0.81990 0.77697 0.95280 0.88885 0.96505 0.92423 0.83072 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.03 10.38 -40.43 -0.42 -4.45 16 3 C 0.53 7.34 7.95 34.76 0.28 7.62 16 4 O -0.49 -7.75 16.11 -19.21 -0.31 -8.06 16 5 C 0.08 1.11 6.75 -83.07 -0.56 0.55 16 6 C -0.05 -0.79 9.20 -38.62 -0.36 -1.14 16 7 C -0.08 -1.22 5.91 -104.68 -0.62 -1.84 16 8 C 0.54 10.49 7.76 -12.19 -0.09 10.40 16 9 O -0.54 -12.57 16.11 5.36 0.09 -12.48 16 10 N -0.69 -13.61 5.03 -55.79 -0.28 -13.89 16 11 C 0.26 6.44 2.56 -69.08 -0.18 6.26 16 12 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 13 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 14 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -24.19 11.32 55.43 0.63 -23.56 16 18 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.11 -1.23 9.62 -38.89 -0.37 -1.60 16 23 C 0.09 0.96 11.17 -17.61 -0.20 0.77 16 24 N -0.43 -5.46 10.09 -9.86 -0.10 -5.56 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.16 2.60 7.33 -52.49 -0.38 2.22 16 29 H 0.39 6.28 6.67 -40.82 -0.27 6.01 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.15 1.32 6.53 -52.48 -0.34 0.98 16 35 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -31.89 313.63 -5.56 -37.44 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.78 Total: 4.04 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.08 Total: 6.83 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.25 Total: -43.01 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.64 Total: -24.99 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.89 -5.56 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267546129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.971 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds